RNA–Protein interactions for RNA: ENST00000488072.1

SHROOM1-205, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 423 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-205ENST00000488072 TMEM57Q8N5G2 664 aa21.7■■□□□ 1.06
SHROOM1-205ENST00000488072 PANK1Q8TE04 598 aa21.7■■□□□ 1.06
SHROOM1-205ENST00000488072 ARHGAP45Q92619 1136 aa21.7■■□□□ 1.06
SHROOM1-205ENST00000488072 CNKSR1Q969H4 720 aa21.7■■□□□ 1.06
SHROOM1-205ENST00000488072 RBM17Q96I25 401 aaKnown RBP21.7■■□□□ 1.06
SHROOM1-205ENST00000488072 C9orf78Q9NZ63 289 aaPredicted RBP21.7■■□□□ 1.06
SHROOM1-205ENST00000488072 TAF1P21675 1872 aa21.69■■□□□ 1.06
SHROOM1-205ENST00000488072 RASSF7Q02833 373 aa21.69■■□□□ 1.06
SHROOM1-205ENST00000488072 TTLL11Q8NHH1 800 aa21.69■■□□□ 1.06
SHROOM1-205ENST00000488072 GREM2Q9H772 168 aa21.69■■□□□ 1.06
SHROOM1-205ENST00000488072 CTSWP56202 376 aa21.68■■□□□ 1.06
SHROOM1-205ENST00000488072 CRAMP1Q96RY5 1269 aa21.68■■□□□ 1.06
SHROOM1-205ENST00000488072 MEIS3Q99687 375 aa21.68■■□□□ 1.06
SHROOM1-205ENST00000488072 PDZRN3Q9UPQ7 1066 aa21.68■■□□□ 1.06
SHROOM1-205ENST00000488072 GOLGB1Q14789 3259 aaKnown RBP21.68■■□□□ 1.06
SHROOM1-205ENST00000488072 IPO8O15397 1037 aaKnown RBP21.67■■□□□ 1.06
SHROOM1-205ENST00000488072 C20orf194Q5TEA3 1177 aa21.67■■□□□ 1.06
SHROOM1-205ENST00000488072 CACNA1SQ13698 1873 aa21.66■■□□□ 1.06
SHROOM1-205ENST00000488072 UTYO14607 1347 aa21.66■■□□□ 1.06
SHROOM1-205ENST00000488072 NFKBIEO00221 500 aa21.66■■□□□ 1.06
SHROOM1-205ENST00000488072 CCT4P50991 539 aaKnown RBP21.66■■□□□ 1.06
SHROOM1-205ENST00000488072 FAM161AQ3B820 660 aa21.66■■□□□ 1.06
SHROOM1-205ENST00000488072 INTS3Q68E01 1043 aaKnown RBP21.66■■□□□ 1.06
SHROOM1-205ENST00000488072 DDX46Q7L014 1031 aaKnown RBP21.66■■□□□ 1.06
SHROOM1-205ENST00000488072 PLA2G12BQ9BX93 195 aa21.66■■□□□ 1.06
SHROOM1-205ENST00000488072 PPEF1O14829 653 aaPredicted RBP21.65■■□□□ 1.06
SHROOM1-205ENST00000488072 ALDH1B1P30837 517 aa21.65■■□□□ 1.06
SHROOM1-205ENST00000488072 GRAPQ13588 217 aa21.65■■□□□ 1.06
SHROOM1-205ENST00000488072 GRAPLQ8TC17 118 aaPredicted RBP21.65■■□□□ 1.06
SHROOM1-205ENST00000488072 UTRNP46939 3433 aa21.65■■□□□ 1.06
SHROOM1-205ENST00000488072 GRIN3BO60391 1043 aa21.64■■□□□ 1.05
SHROOM1-205ENST00000488072 CSF1RP07333 972 aa21.64■■□□□ 1.05
SHROOM1-205ENST00000488072 LMBR1LQ6UX01 489 aa21.64■■□□□ 1.05
SHROOM1-205ENST00000488072 DZIP1LQ8IYY4 767 aaKnown RBP21.64■■□□□ 1.05
SHROOM1-205ENST00000488072 ANKRD44Q8N8A2 993 aa21.64■■□□□ 1.05
SHROOM1-205ENST00000488072 BICC1Q9H694 974 aaKnown RBP21.64■■□□□ 1.05
SHROOM1-205ENST00000488072 DCAF8L1A6NGE4 600 aa21.63■■□□□ 1.05
SHROOM1-205ENST00000488072 CCDC152Q4G0S7 254 aa21.63■■□□□ 1.05
SHROOM1-205ENST00000488072 ZNF594Q96JF6 807 aaPredicted RBP21.63■■□□□ 1.05
SHROOM1-205ENST00000488072 CHMP3Q9Y3E7 222 aa21.63■■□□□ 1.05
SHROOM1-205ENST00000488072 WTIPA6NIX2 430 aaPredicted RBP21.61■■□□□ 1.05
SHROOM1-205ENST00000488072 ITGA6P23229 1130 aa21.61■■□□□ 1.05
SHROOM1-205ENST00000488072 LRRFIP2Q9Y608 721 aaKnown RBP21.61■■□□□ 1.05
SHROOM1-205ENST00000488072 RPS8P62241 208 aaKnown RBP21.6■■□□□ 1.05
SHROOM1-205ENST00000488072 FTSJ3Q8IY81 847 aaKnown RBP21.6■■□□□ 1.05
SHROOM1-205ENST00000488072 GPR101Q96P66 508 aaPredicted RBP21.6■■□□□ 1.05
SHROOM1-205ENST00000488072 C1orf115Q9H7X2 142 aa21.6■■□□□ 1.05
SHROOM1-205ENST00000488072 SNED1Q8TER0 1413 aa21.6■■□□□ 1.05
SHROOM1-205ENST00000488072 ARFGEF1Q9Y6D6 1849 aa21.59■■□□□ 1.05
SHROOM1-205ENST00000488072 ITPRIPQ8IWB1 547 aa21.59■■□□□ 1.05
SHROOM1-205ENST00000488072 KLHDC4Q8TBB5 520 aa21.59■■□□□ 1.05
SHROOM1-205ENST00000488072 COG6Q9Y2V7 657 aa21.59■■□□□ 1.05
SHROOM1-205ENST00000488072 ATP6V0A2Q9Y487 856 aa21.59■■□□□ 1.05
SHROOM1-205ENST00000488072 BBOX1O75936 387 aa21.58■■□□□ 1.05
SHROOM1-205ENST00000488072 UBTFL1P0CB47 393 aaPredicted RBP21.58■■□□□ 1.05
SHROOM1-205ENST00000488072 CCDC93Q567U6 631 aa21.58■■□□□ 1.05
SHROOM1-205ENST00000488072 GPSM2P81274 684 aa21.57■■□□□ 1.04
SHROOM1-205ENST00000488072 C9orf131Q5VYM1 1079 aa21.57■■□□□ 1.04
SHROOM1-205ENST00000488072 SP8Q8IXZ3 490 aa21.57■■□□□ 1.04
SHROOM1-205ENST00000488072 ZNF277Q9NRM2 450 aaPredicted RBP21.57■■□□□ 1.04
SHROOM1-205ENST00000488072 HSP90B1P14625 803 aaKnown RBP21.56■■□□□ 1.04
SHROOM1-205ENST00000488072 RABL6Q3YEC7 729 aaPredicted RBP21.56■■□□□ 1.04
SHROOM1-205ENST00000488072 PUS3Q9BZE2 481 aaKnown RBP21.56■■□□□ 1.04
SHROOM1-205ENST00000488072 ANKRD18AQ8IVF6 992 aa21.55■■□□□ 1.04
SHROOM1-205ENST00000488072 RTL9Q8NET4 1388 aa21.55■■□□□ 1.04
SHROOM1-205ENST00000488072 ANKRD18BA2A2Z9 1011 aa21.54■■□□□ 1.04
SHROOM1-205ENST00000488072 SNAP23O00161 211 aa21.54■■□□□ 1.04
SHROOM1-205ENST00000488072 ZBTB7BO15156 539 aaPredicted RBP21.54■■□□□ 1.04
SHROOM1-205ENST00000488072 TAOK3Q9H2K8 898 aa21.54■■□□□ 1.04
SHROOM1-205ENST00000488072 RFX5P48382 616 aaPredicted RBP21.53■■□□□ 1.04
SHROOM1-205ENST00000488072 RRP1P56182 461 aaKnown RBP21.53■■□□□ 1.04
SHROOM1-205ENST00000488072 IFIT5Q13325 482 aaKnown RBP21.53■■□□□ 1.04
SHROOM1-205ENST00000488072 HELBQ8NG08 1087 aaPredicted RBP21.53■■□□□ 1.04
SHROOM1-205ENST00000488072 RNF181Q9P0P0 153 aa21.53■■□□□ 1.04
SHROOM1-205ENST00000488072 NSFL1CQ9UNZ2 370 aaKnown RBP21.53■■□□□ 1.04
SHROOM1-205ENST00000488072 FKBP4Q02790 459 aaKnown RBP eCLIP21.52■■□□□ 1.04
SHROOM1-205ENST00000488072 MPNDQ8N594 471 aa21.52■■□□□ 1.04
SHROOM1-205ENST00000488072 CDC5LQ99459 802 aaKnown RBP21.52■■□□□ 1.04
SHROOM1-205ENST00000488072 POLLQ9UGP5 575 aa21.52■■□□□ 1.04
SHROOM1-205ENST00000488072 MINPP1Q9UNW1 487 aa21.52■■□□□ 1.04
SHROOM1-205ENST00000488072 COL4A5P29400 1685 aa21.52■■□□□ 1.04
SHROOM1-205ENST00000488072 MYH3P11055 1940 aa21.51■■□□□ 1.03
SHROOM1-205ENST00000488072 CCDC57Q2TAC2 916 aa21.51■■□□□ 1.03
SHROOM1-205ENST00000488072 LRRC24Q50LG9 513 aa21.51■■□□□ 1.03
SHROOM1-205ENST00000488072 PA2G4Q9UQ80 394 aaKnown RBP21.51■■□□□ 1.03
SHROOM1-205ENST00000488072 FER1L6Q2WGJ9 1857 aa21.51■■□□□ 1.03
SHROOM1-205ENST00000488072 DUOX1Q9NRD9 1551 aa21.5■■□□□ 1.03
SHROOM1-205ENST00000488072 GNAI3P08754 354 aa21.5■■□□□ 1.03
SHROOM1-205ENST00000488072 IGHMBP2P38935 993 aaKnown RBP21.5■■□□□ 1.03
SHROOM1-205ENST00000488072 MVPQ14764 893 aaKnown RBP21.5■■□□□ 1.03
SHROOM1-205ENST00000488072 DPP8Q6V1X1 898 aaPredicted RBP21.5■■□□□ 1.03
SHROOM1-205ENST00000488072 RTKN2Q8IZC4 609 aa21.5■■□□□ 1.03
SHROOM1-205ENST00000488072 BSDC1Q9NW68 430 aaPredicted RBP21.5■■□□□ 1.03
SHROOM1-205ENST00000488072 SPEF2Q9C093 1822 aa21.5■■□□□ 1.03
SHROOM1-205ENST00000488072 RIMBP2O15034 1052 aa21.49■■□□□ 1.03
SHROOM1-205ENST00000488072 TAF5LO75529 589 aa21.49■■□□□ 1.03
SHROOM1-205ENST00000488072 GNAI2P04899 355 aa21.49■■□□□ 1.03
SHROOM1-205ENST00000488072 LMNB1P20700 586 aa21.49■■□□□ 1.03
SHROOM1-205ENST00000488072 SOGA3Q5TF21 947 aa21.49■■□□□ 1.03
SHROOM1-205ENST00000488072 PNMA6EA0A0J9YXQ4 647 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms