RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 DMGDHQ9UI17 866 aaKnown RBP8.25□□□□□ -1.09
SMC4-220ENST00000488017 SLC24A1O60721 1099 aa8.24□□□□□ -1.09
SMC4-220ENST00000488017 GRIK5Q16478 980 aa8.24□□□□□ -1.09
SMC4-220ENST00000488017 IGF2-ASQ6U949 168 aa8.24□□□□□ -1.09
SMC4-220ENST00000488017 NGLY1Q96IV0 654 aa8.24□□□□□ -1.09
SMC4-220ENST00000488017 ZNF594Q96JF6 807 aaPredicted RBP8.24□□□□□ -1.09
SMC4-220ENST00000488017 LPIN3Q9BQK8 851 aa8.24□□□□□ -1.09
SMC4-220ENST00000488017 POM121CA8CG34 1229 aa8.23□□□□□ -1.09
SMC4-220ENST00000488017 SEC13P55735 322 aa8.23□□□□□ -1.09
SMC4-220ENST00000488017 TPRNQ4KMQ1 711 aa8.23□□□□□ -1.09
SMC4-220ENST00000488017 HDGFL1Q5TGJ6 251 aa8.23□□□□□ -1.09
SMC4-220ENST00000488017 WFDC8Q8IUA0 241 aa8.23□□□□□ -1.09
SMC4-220ENST00000488017 MED26O95402 600 aa8.22□□□□□ -1.09
SMC4-220ENST00000488017 CPB1P15086 417 aa8.22□□□□□ -1.09
SMC4-220ENST00000488017 JAG1P78504 1218 aa8.22□□□□□ -1.09
SMC4-220ENST00000488017 TRPM4Q8TD43 1214 aa8.22□□□□□ -1.09
SMC4-220ENST00000488017 CHMP7Q8WUX9 453 aaPredicted RBP8.22□□□□□ -1.09
SMC4-220ENST00000488017 PERM1Q5SV97 790 aa8.21□□□□□ -1.1
SMC4-220ENST00000488017 DZIP1LQ8IYY4 767 aaKnown RBP8.21□□□□□ -1.1
SMC4-220ENST00000488017 BCS1LQ9Y276 419 aa8.21□□□□□ -1.1
SMC4-220ENST00000488017 INPP5BP32019 993 aa8.2□□□□□ -1.1
SMC4-220ENST00000488017 ELMSAN1Q6PJG2 1045 aa8.2□□□□□ -1.1
SMC4-220ENST00000488017 DHX32Q7L7V1 743 aaKnown RBP8.2□□□□□ -1.1
SMC4-220ENST00000488017 ZBTB42B2RXF5 422 aa8.19□□□□□ -1.1
SMC4-220ENST00000488017 RASA1P20936 1047 aa8.19□□□□□ -1.1
SMC4-220ENST00000488017 IGFBP4P22692 258 aa8.19□□□□□ -1.1
SMC4-220ENST00000488017 GRNP28799 593 aaKnown RBP8.19□□□□□ -1.1
SMC4-220ENST00000488017 ARID4AP29374 1257 aaPredicted RBP8.19□□□□□ -1.1
SMC4-220ENST00000488017 GPLD1P80108 840 aa8.19□□□□□ -1.1
SMC4-220ENST00000488017 IDH3AP50213 366 aa8.18□□□□□ -1.1
SMC4-220ENST00000488017 FLIIQ13045 1269 aa8.18□□□□□ -1.1
SMC4-220ENST00000488017 ZFATQ9P243 1243 aa8.18□□□□□ -1.1
SMC4-220ENST00000488017 DLL1O00548 723 aa8.17□□□□□ -1.1
SMC4-220ENST00000488017 UBTFP17480 764 aaKnown RBP8.17□□□□□ -1.1
SMC4-220ENST00000488017 ARSDP51689 593 aa8.17□□□□□ -1.1
SMC4-220ENST00000488017 DEAF1O75398 565 aaPredicted RBP8.16□□□□□ -1.1
SMC4-220ENST00000488017 NRLP54845 237 aa8.16□□□□□ -1.1
SMC4-220ENST00000488017 PLAURQ03405 335 aa8.16□□□□□ -1.1
SMC4-220ENST00000488017 IFT43Q96FT9 208 aa8.16□□□□□ -1.1
SMC4-220ENST00000488017 HINFPQ9BQA5 517 aa8.16□□□□□ -1.1
SMC4-220ENST00000488017 GSC2O15499 205 aa8.15□□□□□ -1.1
SMC4-220ENST00000488017 RARAP10276 462 aa8.15□□□□□ -1.1
SMC4-220ENST00000488017 TARSP26639 723 aaKnown RBP8.15□□□□□ -1.1
SMC4-220ENST00000488017 LARP1Q6PKG0 1096 aaKnown RBP8.15□□□□□ -1.1
SMC4-220ENST00000488017 KRT25Q7Z3Z0 450 aa8.15□□□□□ -1.1
SMC4-220ENST00000488017 TMEM130Q8N3G9 435 aa8.15□□□□□ -1.1
SMC4-220ENST00000488017 DCAF11Q8TEB1 546 aa8.15□□□□□ -1.1
SMC4-220ENST00000488017 MRPL18Q9H0U6 180 aaKnown RBP8.15□□□□□ -1.1
SMC4-220ENST00000488017 SMG9Q9H0W8 520 aaKnown RBP8.15□□□□□ -1.1
SMC4-220ENST00000488017 AKTIPQ9H8T0 292 aa8.15□□□□□ -1.1
SMC4-220ENST00000488017 SRA1Q9HD15 236 aaKnown RBP8.15□□□□□ -1.1
SMC4-220ENST00000488017 PTCD1O75127 700 aaKnown RBP8.14□□□□□ -1.11
SMC4-220ENST00000488017 ADAMTS4O75173 837 aa8.14□□□□□ -1.11
SMC4-220ENST00000488017 MLLT1Q03111 559 aaPredicted RBP8.14□□□□□ -1.11
SMC4-220ENST00000488017 KRTAP4-11Q9BYQ6 195 aa8.14□□□□□ -1.11
SMC4-220ENST00000488017 KLK14Q9P0G3 267 aa8.14□□□□□ -1.11
SMC4-220ENST00000488017 MAFBQ9Y5Q3 323 aaPredicted RBP8.14□□□□□ -1.11
SMC4-220ENST00000488017 SASH3O75995 380 aa8.13□□□□□ -1.11
SMC4-220ENST00000488017 TGFB1P01137 390 aa8.13□□□□□ -1.11
SMC4-220ENST00000488017 TFIP11Q9UBB9 837 aaKnown RBP8.13□□□□□ -1.11
SMC4-220ENST00000488017 MICAL2O94851 1124 aa8.12□□□□□ -1.11
SMC4-220ENST00000488017 EGFRP00533 1210 aa8.12□□□□□ -1.11
SMC4-220ENST00000488017 IGLV1-40P01703 118 aa8.12□□□□□ -1.11
SMC4-220ENST00000488017 SPINK2P20155 84 aa8.12□□□□□ -1.11
SMC4-220ENST00000488017 DGKZQ13574 1117 aa8.12□□□□□ -1.11
SMC4-220ENST00000488017 MAP4K3Q8IVH8 894 aa8.12□□□□□ -1.11
SMC4-220ENST00000488017 TLR7Q9NYK1 1049 aaKnown RBP8.12□□□□□ -1.11
SMC4-220ENST00000488017 F8W735 103 aaPredicted RBP8.11□□□□□ -1.11
SMC4-220ENST00000488017 EIF2AK2P19525 551 aaKnown RBP8.11□□□□□ -1.11
SMC4-220ENST00000488017 DPYDQ12882 1025 aa8.11□□□□□ -1.11
SMC4-220ENST00000488017 PTK7Q13308 1070 aa8.11□□□□□ -1.11
SMC4-220ENST00000488017 C11orf91Q3C1V1 193 aa8.11□□□□□ -1.11
SMC4-220ENST00000488017 MYO19Q96H55 970 aa8.11□□□□□ -1.11
SMC4-220ENST00000488017 FOXO3O43524 673 aa8.1□□□□□ -1.11
SMC4-220ENST00000488017 INTS5Q6P9B9 1019 aaKnown RBP8.1□□□□□ -1.11
SMC4-220ENST00000488017 Q6ZS46 218 aa8.1□□□□□ -1.11
SMC4-220ENST00000488017 HFE2Q6ZVN8 426 aa8.1□□□□□ -1.11
SMC4-220ENST00000488017 QTRT2Q9H974 415 aaKnown RBP8.1□□□□□ -1.11
SMC4-220ENST00000488017 HOXD8P13378 290 aaPredicted RBP8.09□□□□□ -1.11
SMC4-220ENST00000488017 CRTC2Q53ET0 693 aaPredicted RBP8.09□□□□□ -1.11
SMC4-220ENST00000488017 CACTIN-AS1Q8N1I8 211 aa8.09□□□□□ -1.11
SMC4-220ENST00000488017 PLD4Q96BZ4 506 aa8.09□□□□□ -1.11
SMC4-220ENST00000488017 ADGRE2Q9UHX3 823 aa8.09□□□□□ -1.11
SMC4-220ENST00000488017 RAXQ9Y2V3 346 aa8.09□□□□□ -1.11
SMC4-220ENST00000488017 LOC102724428A0A0B4J2F2 783 aa8.08□□□□□ -1.12
SMC4-220ENST00000488017 FAM196BA6NMK8 535 aa8.08□□□□□ -1.12
SMC4-220ENST00000488017 OPLAHO14841 1288 aa8.08□□□□□ -1.12
SMC4-220ENST00000488017 SIK1P57059 783 aa8.08□□□□□ -1.12
SMC4-220ENST00000488017 KANK4Q5T7N3 995 aaPredicted RBP8.08□□□□□ -1.12
SMC4-220ENST00000488017 LCE4AQ5TA78 99 aa8.08□□□□□ -1.12
SMC4-220ENST00000488017 DTX1Q86Y01 620 aa8.08□□□□□ -1.12
SMC4-220ENST00000488017 ANKMY2Q8IV38 441 aa8.08□□□□□ -1.12
SMC4-220ENST00000488017 GLMNQ92990 594 aa8.08□□□□□ -1.12
SMC4-220ENST00000488017 VTI1AQ96AJ9 217 aa8.08□□□□□ -1.12
SMC4-220ENST00000488017 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.08□□□□□ -1.12
SMC4-220ENST00000488017 RTCBQ9Y3I0 505 aaKnown RBP8.08□□□□□ -1.12
SMC4-220ENST00000488017 USP17L15C9J2P7 530 aa8.07□□□□□ -1.12
SMC4-220ENST00000488017 USP17L10C9JJH3 530 aa8.07□□□□□ -1.12
SMC4-220ENST00000488017 USP17L13C9JLJ4 530 aa8.07□□□□□ -1.12
SMC4-220ENST00000488017 USP17L12C9JPN9 530 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms