RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 FPGT-TNNI3KV9GXZ4 949 aa21.4■■□□□ 1.02
VIM-206ENST00000487938 MED23Q9ULK4 1368 aa21.4■■□□□ 1.02
VIM-206ENST00000487938 TAF5LO75529 589 aa21.39■■□□□ 1.02
VIM-206ENST00000487938 HSP90AA2PQ14568 343 aaPredicted RBP21.39■■□□□ 1.02
VIM-206ENST00000487938 CSPP1Q1MSJ5 1256 aa21.39■■□□□ 1.02
VIM-206ENST00000487938 CHMP3Q9Y3E7 222 aa21.39■■□□□ 1.02
VIM-206ENST00000487938 DNAJC2Q99543 621 aaKnown RBP21.39■■□□□ 1.01
VIM-206ENST00000487938 A0A087WZG4 1122 aa21.38■■□□□ 1.01
VIM-206ENST00000487938 CCDC129Q6ZRS4 1044 aa21.38■■□□□ 1.01
VIM-206ENST00000487938 ZNF830Q96NB3 372 aaPredicted RBP21.38■■□□□ 1.01
VIM-206ENST00000487938 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP21.38■■□□□ 1.015e-10■■□□□ 11.7
VIM-206ENST00000487938 SCN11AQ9UI33 1791 aa21.38■■□□□ 1.01
VIM-206ENST00000487938 ADCY5O95622 1261 aa21.38■■□□□ 1.01
VIM-206ENST00000487938 ATP5JP18859 108 aa21.38■■□□□ 1.01
VIM-206ENST00000487938 SEC62Q99442 399 aaKnown RBP21.38■■□□□ 1.01
VIM-206ENST00000487938 ALS2Q96Q42 1657 aa21.37■■□□□ 1.01
VIM-206ENST00000487938 DCAF5Q96JK2 942 aa21.37■■□□□ 1.01
VIM-206ENST00000487938 FMNL2Q96PY5 1086 aa21.37■■□□□ 1.01
VIM-206ENST00000487938 DBNDD2Q9BQY9 259 aa21.37■■□□□ 1.01
VIM-206ENST00000487938 DCCP43146 1447 aa21.37■■□□□ 1.01
VIM-206ENST00000487938 COL15A1P39059 1388 aa21.36■■□□□ 1.01
VIM-206ENST00000487938 PLCB2Q00722 1185 aa21.36■■□□□ 1.01
VIM-206ENST00000487938 ANKRD1Q15327 319 aa21.36■■□□□ 1.01
VIM-206ENST00000487938 CABP4P57796 275 aa21.36■■□□□ 1.01
VIM-206ENST00000487938 TTC6Q86TZ1 520 aa21.36■■□□□ 1.01
VIM-206ENST00000487938 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.36■■□□□ 1.01
VIM-206ENST00000487938 FUCA2Q9BTY2 467 aa21.35■■□□□ 1.01
VIM-206ENST00000487938 TFIP11Q9UBB9 837 aaKnown RBP21.35■■□□□ 1.01
VIM-206ENST00000487938 LMTK3Q96Q04 1460 aa21.34■■□□□ 1.01
VIM-206ENST00000487938 KRT85P78386 507 aa21.34■■□□□ 1.01
VIM-206ENST00000487938 RABL6Q3YEC7 729 aaPredicted RBP21.34■■□□□ 1.01
VIM-206ENST00000487938 HMG20BQ9P0W2 317 aa21.34■■□□□ 1.01
VIM-206ENST00000487938 TSGA10IPQ3SY00 556 aa21.34■■□□□ 1.01
VIM-206ENST00000487938 LMBR1LQ6UX01 489 aa21.34■■□□□ 1.01
VIM-206ENST00000487938 DDX46Q7L014 1031 aaKnown RBP21.34■■□□□ 1.01
VIM-206ENST00000487938 CADPS2Q86UW7 1296 aa21.34■■□□□ 1.01
VIM-206ENST00000487938 ALDH8A1Q9H2A2 487 aaPredicted RBP21.34■■□□□ 1.01
VIM-206ENST00000487938 RRP9O43818 475 aaKnown RBP21.33■■□□□ 1.01
VIM-206ENST00000487938 KDM4AO75164 1064 aa21.33■■□□□ 1.01
VIM-206ENST00000487938 PRKCSHP14314 528 aaPredicted RBP21.33■■□□□ 1.01
VIM-206ENST00000487938 PDCP20941 246 aa21.33■■□□□ 1.01
VIM-206ENST00000487938 USPL1Q5W0Q7 1092 aa21.33■■□□□ 1.01
VIM-206ENST00000487938 MRC1P22897 1456 aa21.33■■□□□ 1.01
VIM-206ENST00000487938 CAMK4Q16566 473 aa21.32■■□□□ 1
VIM-206ENST00000487938 NEK1Q96PY6 1258 aa21.32■■□□□ 1
VIM-206ENST00000487938 LIG1P18858 919 aa21.32■■□□□ 1
VIM-206ENST00000487938 SLFNL1Q499Z3 407 aa21.32■■□□□ 1
VIM-206ENST00000487938 JCADQ9P266 1359 aa21.32■■□□□ 1
VIM-206ENST00000487938 JAK2O60674 1132 aa21.31■■□□□ 1
VIM-206ENST00000487938 CASP7P55210 303 aa21.31■■□□□ 1
VIM-206ENST00000487938 ZNF609O15014 1411 aa21.31■■□□□ 1
VIM-206ENST00000487938 STRCP1A6NGW2 1772 aa21.31■■□□□ 1
VIM-206ENST00000487938 KIAA2012Q0VF49 1180 aa21.31■■□□□ 1
VIM-206ENST00000487938 Q6ZUG5 572 aa21.31■■□□□ 1
VIM-206ENST00000487938 PLBD2Q8NHP8 589 aa21.31■■□□□ 1
VIM-206ENST00000487938 NEUROD6Q96NK8 337 aa21.31■■□□□ 1
VIM-206ENST00000487938 HAUS7Q99871 368 aa21.31■■□□□ 1
VIM-206ENST00000487938 LRRC2Q9BYS8 371 aa21.31■■□□□ 1
VIM-206ENST00000487938 TTC12Q9H892 705 aaPredicted RBP21.31■■□□□ 1
VIM-206ENST00000487938 AP5Z1O43299 807 aa21.3■■□□□ 1
VIM-206ENST00000487938 MCMDC2Q4G0Z9 681 aa21.3■■□□□ 1
VIM-206ENST00000487938 CYP21A2P08686 494 aa21.3■■□□□ 1
VIM-206ENST00000487938 TERF1P54274 439 aa21.3■■□□□ 1
VIM-206ENST00000487938 AFDNP55196 1824 aaKnown RBP21.3■■□□□ 1
VIM-206ENST00000487938 NBPF26B4DH59 902 aa21.29■■□□□ 1
VIM-206ENST00000487938 HSP90B1P14625 803 aaKnown RBP21.29■■□□□ 1
VIM-206ENST00000487938 TIMM10P62072 90 aa21.29■■□□□ 1
VIM-206ENST00000487938 RBM10P98175 930 aaKnown RBP21.29■■□□□ 1
VIM-206ENST00000487938 FOXO4P98177 505 aa21.29■■□□□ 1
VIM-206ENST00000487938 KRT32Q14532 448 aa21.29■■□□□ 1
VIM-206ENST00000487938 NBPF14Q5TI25 921 aa21.29■■□□□ 1
VIM-206ENST00000487938 NBPF10Q6P3W6 841 aaKnown RBP21.29■■□□□ 1
VIM-206ENST00000487938 NBPF15Q8N660 670 aa21.29■■□□□ 1
VIM-206ENST00000487938 DNAJC5Q9H3Z4 198 aa21.29■■□□□ 1
VIM-206ENST00000487938 TTLL7Q6ZT98 887 aa21.29■■□□□ 1
VIM-206ENST00000487938 TNS3Q68CZ2 1445 aa21.28■■□□□ 1
VIM-206ENST00000487938 PDIA4P13667 645 aaKnown RBP21.28■■□□□ 1
VIM-206ENST00000487938 DDX11Q96FC9 970 aa21.28■■□□□ 1
VIM-206ENST00000487938 SPATA32Q96LK8 384 aa21.28■■□□□ 1
VIM-206ENST00000487938 U3KPZ7 1027 aaPredicted RBP21.28■■□□□ 1
VIM-206ENST00000487938 UQCRHLA0A096LP55 91 aa21.27■■□□□ 1
VIM-206ENST00000487938 UQCRHP07919 91 aa21.27■■□□□ 1
VIM-206ENST00000487938 CCDC192P0DO97 292 aa21.27■■□□□ 1
VIM-206ENST00000487938 GTF3C6Q969F1 213 aa21.27■■□□□ 1
VIM-206ENST00000487938 GOLGA6L4A6NEF3 574 aa21.27■■□□□ 1
VIM-206ENST00000487938 GOLIM4O00461 696 aa21.27■■□□□ 1
VIM-206ENST00000487938 C17orf53Q8N3J3 647 aaPredicted RBP21.27■■□□□ 1
VIM-206ENST00000487938 COL18A1P39060 1754 aa21.27■■□□□ 1
VIM-206ENST00000487938 HSPA2P54652 639 aa21.26■□□□□ 0.99
VIM-206ENST00000487938 UBE2Q2Q8WVN8 375 aa21.26■□□□□ 0.99
VIM-206ENST00000487938 NUP62CLQ9H1M0 184 aa21.26■□□□□ 0.99
VIM-206ENST00000487938 ELP1O95163 1332 aa21.26■□□□□ 0.99
VIM-206ENST00000487938 H7C1W4 665 aa21.26■□□□□ 0.99
VIM-206ENST00000487938 ATG9AQ7Z3C6 839 aa21.26■□□□□ 0.99
VIM-206ENST00000487938 CKAP2LQ8IYA6 745 aa21.26■□□□□ 0.99
VIM-206ENST00000487938 KBTBD3Q8NAB2 608 aa21.26■□□□□ 0.99
VIM-206ENST00000487938 BRF1Q92994 677 aa21.26■□□□□ 0.99
VIM-206ENST00000487938 SCAND2PQ9GZW5 306 aaPredicted RBP21.26■□□□□ 0.99
VIM-206ENST00000487938 DACT1Q9NYF0 836 aa21.26■□□□□ 0.99
VIM-206ENST00000487938 A1BGP04217 495 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms