RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 CCDC85CA6NKD9 419 aa20.32■□□□□ 0.84
MCF2L-228ENST00000487354 YDJCA8MPS7 323 aa20.32■□□□□ 0.84
MCF2L-228ENST00000487354 ANXA1P04083 346 aa20.32■□□□□ 0.84
MCF2L-228ENST00000487354 KIAA2012Q0VF49 1180 aa20.32■□□□□ 0.84
MCF2L-228ENST00000487354 HHIPL1Q96JK4 782 aa20.32■□□□□ 0.84
MCF2L-228ENST00000487354 UTP14AQ9BVJ6 771 aaKnown RBP20.32■□□□□ 0.84
MCF2L-228ENST00000487354 ZIC5Q96T25 663 aa20.31■□□□□ 0.84
MCF2L-228ENST00000487354 BEGAINQ9BUH8 593 aa20.31■□□□□ 0.84
MCF2L-228ENST00000487354 SCN9AQ15858 1988 aa20.3■□□□□ 0.84
MCF2L-228ENST00000487354 BRPF1P55201 1214 aaPredicted RBP20.3■□□□□ 0.84
MCF2L-228ENST00000487354 CIAPIN1Q6FI81 312 aa20.3■□□□□ 0.84
MCF2L-228ENST00000487354 SP8Q8IXZ3 490 aa20.3■□□□□ 0.84
MCF2L-228ENST00000487354 MCOLN1Q9GZU1 580 aa20.3■□□□□ 0.84
MCF2L-228ENST00000487354 RAD17O75943 681 aa20.29■□□□□ 0.84
MCF2L-228ENST00000487354 MLLT1Q03111 559 aaPredicted RBP20.29■□□□□ 0.84
MCF2L-228ENST00000487354 DLK2Q6UY11 383 aa20.29■□□□□ 0.84
MCF2L-228ENST00000487354 DPP8Q6V1X1 898 aaPredicted RBP20.29■□□□□ 0.84
MCF2L-228ENST00000487354 NLRP10Q86W26 655 aa20.29■□□□□ 0.84
MCF2L-228ENST00000487354 SUPT20HQ8NEM7 779 aa20.29■□□□□ 0.84
MCF2L-228ENST00000487354 HCLS1P14317 486 aaPredicted RBP20.28■□□□□ 0.84
MCF2L-228ENST00000487354 ZC3H15Q8WU90 426 aaKnown RBP20.28■□□□□ 0.84
MCF2L-228ENST00000487354 BBOX1O75936 387 aa20.27■□□□□ 0.84
MCF2L-228ENST00000487354 MPNDQ8N594 471 aa20.27■□□□□ 0.84
MCF2L-228ENST00000487354 TSPYL4Q9UJ04 414 aa20.27■□□□□ 0.84
MCF2L-228ENST00000487354 CA12O43570 354 aa20.26■□□□□ 0.83
MCF2L-228ENST00000487354 EIF2S2P20042 333 aaKnown RBP20.26■□□□□ 0.83
MCF2L-228ENST00000487354 GRAPQ13588 217 aa20.26■□□□□ 0.83
MCF2L-228ENST00000487354 GRAPLQ8TC17 118 aaPredicted RBP20.26■□□□□ 0.83
MCF2L-228ENST00000487354 PSME4Q14997 1843 aa20.25■□□□□ 0.83
MCF2L-228ENST00000487354 EGFRP00533 1210 aa20.25■□□□□ 0.83
MCF2L-228ENST00000487354 ZNF408Q9H9D4 720 aa20.25■□□□□ 0.83
MCF2L-228ENST00000487354 NEFMP07197 916 aa20.24■□□□□ 0.83
MCF2L-228ENST00000487354 CDC37L1Q7L3B6 337 aa20.24■□□□□ 0.83
MCF2L-228ENST00000487354 COPS6Q7L5N1 327 aa20.24■□□□□ 0.83
MCF2L-228ENST00000487354 MICALL2Q8IY33 904 aa20.24■□□□□ 0.83
MCF2L-228ENST00000487354 XAGE3Q8WTP9 111 aa20.24■□□□□ 0.83
MCF2L-228ENST00000487354 BCL2L13Q9BXK5 485 aa20.24■□□□□ 0.83
MCF2L-228ENST00000487354 CNOT7Q9UIV1 285 aaKnown RBP20.24■□□□□ 0.83
MCF2L-228ENST00000487354 AKAP11Q9UKA4 1901 aa20.23■□□□□ 0.83
MCF2L-228ENST00000487354 FAM155AB1AL88 458 aaPredicted RBP20.23■□□□□ 0.83
MCF2L-228ENST00000487354 TNIP1Q15025 636 aa20.23■□□□□ 0.83
MCF2L-228ENST00000487354 TMX4Q9H1E5 349 aaPredicted RBP20.23■□□□□ 0.83
MCF2L-228ENST00000487354 ZBTB12Q9Y330 459 aaPredicted RBP20.23■□□□□ 0.83
MCF2L-228ENST00000487354 PDE4DIPQ5VU43 2346 aa20.22■□□□□ 0.83
MCF2L-228ENST00000487354 RTL9Q8NET4 1388 aa20.22■□□□□ 0.83
MCF2L-228ENST00000487354 TCIRG1Q13488 830 aa20.22■□□□□ 0.83
MCF2L-228ENST00000487354 USP48Q86UV5 1035 aa20.22■□□□□ 0.83
MCF2L-228ENST00000487354 SH3TC1Q8TE82 1336 aa20.22■□□□□ 0.83
MCF2L-228ENST00000487354 MAPK8IP3Q9UPT6 1336 aa20.22■□□□□ 0.83
MCF2L-228ENST00000487354 PSMD14O00487 310 aa20.21■□□□□ 0.83
MCF2L-228ENST00000487354 KRT24Q2M2I5 525 aa20.21■□□□□ 0.83
MCF2L-228ENST00000487354 HSP90AB3PQ58FF7 597 aa20.21■□□□□ 0.83
MCF2L-228ENST00000487354 DDX46Q7L014 1031 aaKnown RBP20.21■□□□□ 0.83
MCF2L-228ENST00000487354 SAMD7Q7Z3H4 446 aa20.21■□□□□ 0.83
MCF2L-228ENST00000487354 NECTIN2Q92692 538 aa20.21■□□□□ 0.83
MCF2L-228ENST00000487354 ZNF428Q96B54 188 aa20.21■□□□□ 0.83
MCF2L-228ENST00000487354 BABAM1Q9NWV8 329 aa20.21■□□□□ 0.83
MCF2L-228ENST00000487354 TRMT112Q9UI30 125 aaKnown RBP20.21■□□□□ 0.83
MCF2L-228ENST00000487354 ZNF646O15015 1829 aaPredicted RBP20.2■□□□□ 0.82
MCF2L-228ENST00000487354 HUNKP57058 714 aa20.2■□□□□ 0.82
MCF2L-228ENST00000487354 AIMP1Q12904 312 aaKnown RBP20.2■□□□□ 0.82
MCF2L-228ENST00000487354 NOGQ13253 232 aa20.2■□□□□ 0.82
MCF2L-228ENST00000487354 DGKZQ13574 1117 aa20.2■□□□□ 0.82
MCF2L-228ENST00000487354 DPF2Q92785 391 aa20.2■□□□□ 0.82
MCF2L-228ENST00000487354 CELF1Q92879 486 aaKnown RBP20.2■□□□□ 0.82
MCF2L-228ENST00000487354 DBNDD1Q9H9R9 158 aa20.19■□□□□ 0.82
MCF2L-228ENST00000487354 KCNQ5Q9NR82 932 aa20.19■□□□□ 0.82
MCF2L-228ENST00000487354 ADM5C9JUS6 153 aa20.18■□□□□ 0.82
MCF2L-228ENST00000487354 RIPK4P57078 832 aa20.18■□□□□ 0.82
MCF2L-228ENST00000487354 TMC4Q7Z404 712 aa20.18■□□□□ 0.82
MCF2L-228ENST00000487354 POLLQ9UGP5 575 aa20.18■□□□□ 0.82
MCF2L-228ENST00000487354 H7C1D1 291 aa20.17■□□□□ 0.82
MCF2L-228ENST00000487354 TBC1D10BQ4KMP7 808 aaPredicted RBP20.17■□□□□ 0.82
MCF2L-228ENST00000487354 ISCA1Q9BUE6 129 aa20.17■□□□□ 0.82
MCF2L-228ENST00000487354 TMPOP42166 694 aaKnown RBP20.16■□□□□ 0.82
MCF2L-228ENST00000487354 GPSM2P81274 684 aa20.16■□□□□ 0.82
MCF2L-228ENST00000487354 SF3B3Q15393 1217 aaKnown RBP20.16■□□□□ 0.82
MCF2L-228ENST00000487354 RGMBQ6NW40 437 aa20.16■□□□□ 0.82
MCF2L-228ENST00000487354 KRT26Q7Z3Y9 468 aa20.16■□□□□ 0.82
MCF2L-228ENST00000487354 CHPF2Q9P2E5 772 aa20.16■□□□□ 0.82
MCF2L-228ENST00000487354 WASHC4Q2M389 1173 aa20.15■□□□□ 0.82
MCF2L-228ENST00000487354 PNNQ9H307 717 aaKnown RBP20.15■□□□□ 0.82
MCF2L-228ENST00000487354 GBA2Q9HCG7 927 aaPredicted RBP20.15■□□□□ 0.82
MCF2L-228ENST00000487354 ASTN2O75129 1339 aaPredicted RBP20.15■□□□□ 0.82
MCF2L-228ENST00000487354 ZNF609O15014 1411 aa20.14■□□□□ 0.81
MCF2L-228ENST00000487354 RIMBP2O15034 1052 aa20.14■□□□□ 0.81
MCF2L-228ENST00000487354 ECE2O60344 883 aa20.14■□□□□ 0.81
MCF2L-228ENST00000487354 FAM89AQ96GI7 184 aa20.14■□□□□ 0.81
MCF2L-228ENST00000487354 CFAP44Q96MT7 982 aa20.14■□□□□ 0.81
MCF2L-228ENST00000487354 SAGE1Q9NXZ1 904 aa20.14■□□□□ 0.81
MCF2L-228ENST00000487354 NSFL1CQ9UNZ2 370 aaKnown RBP20.14■□□□□ 0.81
MCF2L-228ENST00000487354 CHL1O00533 1208 aa20.13■□□□□ 0.81
MCF2L-228ENST00000487354 RPS12P25398 132 aaKnown RBP20.13■□□□□ 0.81
MCF2L-228ENST00000487354 PLBD2Q8NHP8 589 aa20.13■□□□□ 0.81
MCF2L-228ENST00000487354 PAPPA2Q9BXP8 1791 aa20.13■□□□□ 0.81
MCF2L-228ENST00000487354 KIF23Q02241 960 aaPredicted RBP20.12■□□□□ 0.81
MCF2L-228ENST00000487354 DOK7Q18PE1 504 aa20.12■□□□□ 0.81
MCF2L-228ENST00000487354 TBC1D16Q8TBP0 767 aa20.12■□□□□ 0.81
MCF2L-228ENST00000487354 ATP5J2-PTCD1G3V325 749 aa20.11■□□□□ 0.81
MCF2L-228ENST00000487354 SLC10A3P09131 477 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms