RNA–Protein interactions for RNA: ENST00000487215.1

SMPDL3A-202, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2

Gene SMPDL3A, Length 903 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-202ENST00000487215 NECTIN2Q92692 538 aa25.53■■□□□ 1.68
SMPDL3A-202ENST00000487215 CIAPIN1Q6FI81 312 aa25.52■■□□□ 1.68
SMPDL3A-202ENST00000487215 BEGAINQ9BUH8 593 aa25.52■■□□□ 1.68
SMPDL3A-202ENST00000487215 GRAPQ13588 217 aa25.51■■□□□ 1.67
SMPDL3A-202ENST00000487215 GRAPLQ8TC17 118 aaPredicted RBP25.51■■□□□ 1.67
SMPDL3A-202ENST00000487215 CDHR2Q9BYE9 1310 aa25.51■■□□□ 1.67
SMPDL3A-202ENST00000487215 AOC2O75106 756 aa25.5■■□□□ 1.67
SMPDL3A-202ENST00000487215 RAD17O75943 681 aa25.5■■□□□ 1.67
SMPDL3A-202ENST00000487215 CELF2O95319 508 aaKnown RBP25.5■■□□□ 1.67
SMPDL3A-202ENST00000487215 TMPOP42166 694 aaKnown RBP25.5■■□□□ 1.67
SMPDL3A-202ENST00000487215 LMOD3Q0VAK6 560 aa25.5■■□□□ 1.67
SMPDL3A-202ENST00000487215 TCIRG1Q13488 830 aa25.5■■□□□ 1.67
SMPDL3A-202ENST00000487215 DDX46Q7L014 1031 aaKnown RBP25.5■■□□□ 1.67
SMPDL3A-202ENST00000487215 SH3TC1Q8TE82 1336 aa25.5■■□□□ 1.67
SMPDL3A-202ENST00000487215 GLIS2Q9BZE0 524 aaPredicted RBP25.5■■□□□ 1.67
SMPDL3A-202ENST00000487215 PGAP2Q9UHJ9 254 aa25.5■■□□□ 1.67
SMPDL3A-202ENST00000487215 TRMT112Q9UI30 125 aaKnown RBP25.5■■□□□ 1.67
SMPDL3A-202ENST00000487215 DUOX1Q9NRD9 1551 aa25.49■■□□□ 1.67
SMPDL3A-202ENST00000487215 SAPCD2Q86UD0 394 aa25.49■■□□□ 1.67
SMPDL3A-202ENST00000487215 BCL2L13Q9BXK5 485 aa25.49■■□□□ 1.67
SMPDL3A-202ENST00000487215 MAP2K2P36507 400 aa25.48■■□□□ 1.67
SMPDL3A-202ENST00000487215 HIRAP54198 1017 aaPredicted RBP25.48■■□□□ 1.67
SMPDL3A-202ENST00000487215 TNIP1Q15025 636 aa25.48■■□□□ 1.67
SMPDL3A-202ENST00000487215 KRT24Q2M2I5 525 aa25.47■■□□□ 1.67
SMPDL3A-202ENST00000487215 TRPM4Q8TD43 1214 aa25.47■■□□□ 1.67
SMPDL3A-202ENST00000487215 TSKSQ9UJT2 592 aa25.47■■□□□ 1.67
SMPDL3A-202ENST00000487215 YDJCA8MPS7 323 aa25.46■■□□□ 1.67
SMPDL3A-202ENST00000487215 ZC3H15Q8WU90 426 aaKnown RBP25.46■■□□□ 1.67
SMPDL3A-202ENST00000487215 LRRC37AA6NMS7 1700 aa25.46■■□□□ 1.67
SMPDL3A-202ENST00000487215 ZNF428Q96B54 188 aa25.45■■□□□ 1.66
SMPDL3A-202ENST00000487215 HHIPL1Q96JK4 782 aa25.45■■□□□ 1.66
SMPDL3A-202ENST00000487215 SHTN1A0MZ66 631 aa25.44■■□□□ 1.66
SMPDL3A-202ENST00000487215 TMC4Q7Z404 712 aa25.44■■□□□ 1.66
SMPDL3A-202ENST00000487215 ZNF408Q9H9D4 720 aa25.44■■□□□ 1.66
SMPDL3A-202ENST00000487215 CHPF2Q9P2E5 772 aa25.44■■□□□ 1.66
SMPDL3A-202ENST00000487215 CNOT7Q9UIV1 285 aaKnown RBP25.44■■□□□ 1.66
SMPDL3A-202ENST00000487215 TAF1P21675 1872 aa25.43■■□□□ 1.66
SMPDL3A-202ENST00000487215 CHL1O00533 1208 aa25.43■■□□□ 1.66
SMPDL3A-202ENST00000487215 CDC37L1Q7L3B6 337 aa25.43■■□□□ 1.66
SMPDL3A-202ENST00000487215 RALBP1Q15311 655 aa25.42■■□□□ 1.66
SMPDL3A-202ENST00000487215 NEUROD2Q15784 382 aa25.42■■□□□ 1.66
SMPDL3A-202ENST00000487215 DDX60Q8IY21 1712 aaKnown RBP25.42■■□□□ 1.66
SMPDL3A-202ENST00000487215 FAM161AQ3B820 660 aa25.41■■□□□ 1.66
SMPDL3A-202ENST00000487215 MICALL2Q8IY33 904 aa25.41■■□□□ 1.66
SMPDL3A-202ENST00000487215 CCDC146Q8IYE0 955 aa25.41■■□□□ 1.66
SMPDL3A-202ENST00000487215 ZBTB12Q9Y330 459 aaPredicted RBP25.41■■□□□ 1.66
SMPDL3A-202ENST00000487215 H7C1D1 291 aa25.4■■□□□ 1.66
SMPDL3A-202ENST00000487215 BRPF1P55201 1214 aaPredicted RBP25.4■■□□□ 1.66
SMPDL3A-202ENST00000487215 PLBD2Q8NHP8 589 aa25.4■■□□□ 1.66
SMPDL3A-202ENST00000487215 CELF1Q92879 486 aaKnown RBP25.4■■□□□ 1.66
SMPDL3A-202ENST00000487215 ISCA1Q9BUE6 129 aa25.4■■□□□ 1.66
SMPDL3A-202ENST00000487215 LAS1LQ9Y4W2 734 aaKnown RBP25.4■■□□□ 1.66
SMPDL3A-202ENST00000487215 CCDC85CA6NKD9 419 aa25.39■■□□□ 1.66
SMPDL3A-202ENST00000487215 CA12O43570 354 aa25.39■■□□□ 1.66
SMPDL3A-202ENST00000487215 WASHC4Q2M389 1173 aa25.39■■□□□ 1.66
SMPDL3A-202ENST00000487215 HDGFL1Q5TGJ6 251 aa25.39■■□□□ 1.66
SMPDL3A-202ENST00000487215 FAM89AQ96GI7 184 aa25.39■■□□□ 1.66
SMPDL3A-202ENST00000487215 PSMD14O00487 310 aa25.38■■□□□ 1.65
SMPDL3A-202ENST00000487215 SF3B3Q15393 1217 aaKnown RBP25.38■■□□□ 1.65
SMPDL3A-202ENST00000487215 ANKRD13DQ6ZTN6 518 aa25.38■■□□□ 1.65
SMPDL3A-202ENST00000487215 USP48Q86UV5 1035 aa25.38■■□□□ 1.65
SMPDL3A-202ENST00000487215 DPF2Q92785 391 aa25.38■■□□□ 1.65
SMPDL3A-202ENST00000487215 DBNDD1Q9H9R9 158 aa25.38■■□□□ 1.65
SMPDL3A-202ENST00000487215 NSFL1CQ9UNZ2 370 aaKnown RBP25.38■■□□□ 1.65
SMPDL3A-202ENST00000487215 TRIM35Q9UPQ4 493 aa25.38■■□□□ 1.65
SMPDL3A-202ENST00000487215 COL4A1P02462 1669 aa25.38■■□□□ 1.65
SMPDL3A-202ENST00000487215 ATP5J2-PTCD1G3V325 749 aa25.37■■□□□ 1.65
SMPDL3A-202ENST00000487215 DLK2Q6UY11 383 aa25.37■■□□□ 1.65
SMPDL3A-202ENST00000487215 SAMD7Q7Z3H4 446 aa25.37■■□□□ 1.65
SMPDL3A-202ENST00000487215 HOXB7P09629 217 aa25.36■■□□□ 1.65
SMPDL3A-202ENST00000487215 POLLQ9UGP5 575 aa25.36■■□□□ 1.65
SMPDL3A-202ENST00000487215 RIMBP2O15034 1052 aa25.35■■□□□ 1.65
SMPDL3A-202ENST00000487215 GPSM2P81274 684 aa25.35■■□□□ 1.65
SMPDL3A-202ENST00000487215 DBF4Q9UBU7 674 aaPredicted RBP25.35■■□□□ 1.65
SMPDL3A-202ENST00000487215 C6orf229H3BNL8 230 aa25.34■■□□□ 1.65
SMPDL3A-202ENST00000487215 EGFRP00533 1210 aa25.34■■□□□ 1.65
SMPDL3A-202ENST00000487215 HUNKP57058 714 aa25.34■■□□□ 1.65
SMPDL3A-202ENST00000487215 TBC1D10BQ4KMP7 808 aaPredicted RBP25.34■■□□□ 1.65
SMPDL3A-202ENST00000487215 RUNDC1Q96C34 613 aa25.34■■□□□ 1.65
SMPDL3A-202ENST00000487215 ZIC5Q96T25 663 aa25.34■■□□□ 1.65
SMPDL3A-202ENST00000487215 NOGQ13253 232 aa25.33■■□□□ 1.65
SMPDL3A-202ENST00000487215 RTL5Q5HYW3 569 aaPredicted RBP25.33■■□□□ 1.65
SMPDL3A-202ENST00000487215 MCOLN1Q9GZU1 580 aa25.33■■□□□ 1.65
SMPDL3A-202ENST00000487215 MYBBP1AQ9BQG0 1328 aaKnown RBP25.33■■□□□ 1.64
SMPDL3A-202ENST00000487215 RTL9Q8NET4 1388 aa25.32■■□□□ 1.64
SMPDL3A-202ENST00000487215 ECE2O60344 883 aa25.32■■□□□ 1.64
SMPDL3A-202ENST00000487215 RPS12P25398 132 aaKnown RBP25.32■■□□□ 1.64
SMPDL3A-202ENST00000487215 DOK7Q18PE1 504 aa25.32■■□□□ 1.64
SMPDL3A-202ENST00000487215 EYA3Q99504 573 aa25.32■■□□□ 1.64
SMPDL3A-202ENST00000487215 KCNQ5Q9NR82 932 aa25.32■■□□□ 1.64
SMPDL3A-202ENST00000487215 IRS4O14654 1257 aaPredicted RBP25.31■■□□□ 1.64
SMPDL3A-202ENST00000487215 RGS19P49795 217 aa25.31■■□□□ 1.64
SMPDL3A-202ENST00000487215 KRT26Q7Z3Y9 468 aa25.31■■□□□ 1.64
SMPDL3A-202ENST00000487215 HYPKQ9NX55 129 aa25.31■■□□□ 1.64
SMPDL3A-202ENST00000487215 MLLT1Q03111 559 aaPredicted RBP25.3■■□□□ 1.64
SMPDL3A-202ENST00000487215 TRIM28Q13263 835 aaKnown RBP25.3■■□□□ 1.64
SMPDL3A-202ENST00000487215 TBC1D16Q8TBP0 767 aa25.3■■□□□ 1.64
SMPDL3A-202ENST00000487215 ADM5C9JUS6 153 aa25.29■■□□□ 1.64
SMPDL3A-202ENST00000487215 RPS8P62241 208 aaKnown RBP25.29■■□□□ 1.64
SMPDL3A-202ENST00000487215 RBM26Q5T8P6 1007 aaKnown RBP25.29■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms