RNA–Protein interactions for RNA: ENST00000486806.1

MCF2L-227, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 361 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-227ENST00000486806 TTLL11Q8NHH1 800 aa11.97□□□□□ -0.49
MCF2L-227ENST00000486806 SSH3Q8TE77 659 aa11.97□□□□□ -0.49
MCF2L-227ENST00000486806 ANKRD31Q8N7Z5 1873 aa11.96□□□□□ -0.49
MCF2L-227ENST00000486806 NPHP1O15259 732 aa11.96□□□□□ -0.49
MCF2L-227ENST00000486806 SRGAP3O43295 1099 aa11.96□□□□□ -0.49
MCF2L-227ENST00000486806 RFX5P48382 616 aaPredicted RBP11.96□□□□□ -0.49
MCF2L-227ENST00000486806 FAM161AQ3B820 660 aa11.96□□□□□ -0.49
MCF2L-227ENST00000486806 BRIP1Q9BX63 1249 aa11.96□□□□□ -0.49
MCF2L-227ENST00000486806 GREM2Q9H772 168 aa11.96□□□□□ -0.49
MCF2L-227ENST00000486806 ATF5Q9Y2D1 282 aaPredicted RBP11.96□□□□□ -0.49
MCF2L-227ENST00000486806 COL11A2P13942 1736 aaPredicted RBP11.95□□□□□ -0.5
MCF2L-227ENST00000486806 COL4A1P02462 1669 aa11.95□□□□□ -0.5
MCF2L-227ENST00000486806 POLD1P28340 1107 aa11.95□□□□□ -0.5
MCF2L-227ENST00000486806 CCDC152Q4G0S7 254 aa11.95□□□□□ -0.5
MCF2L-227ENST00000486806 NLRP3Q96P20 1036 aa11.95□□□□□ -0.5
MCF2L-227ENST00000486806 GTF3C3Q9Y5Q9 886 aa11.95□□□□□ -0.5
MCF2L-227ENST00000486806 KIF13BQ9NQT8 1826 aa11.95□□□□□ -0.5
MCF2L-227ENST00000486806 KDM2BQ8NHM5 1336 aa11.94□□□□□ -0.5
MCF2L-227ENST00000486806 ITGA6P23229 1130 aa11.94□□□□□ -0.5
MCF2L-227ENST00000486806 PPP4R2Q9NY27 417 aa11.94□□□□□ -0.5
MCF2L-227ENST00000486806 MYH3P11055 1940 aa11.94□□□□□ -0.5
MCF2L-227ENST00000486806 HMMRO75330 724 aa11.93□□□□□ -0.5
MCF2L-227ENST00000486806 IGHDP01880 384 aa11.93□□□□□ -0.5
MCF2L-227ENST00000486806 PDE6BP35913 854 aa11.93□□□□□ -0.5
MCF2L-227ENST00000486806 PTPN12Q05209 780 aaKnown RBP11.93□□□□□ -0.5
MCF2L-227ENST00000486806 CCDC85AQ96PX6 553 aaPredicted RBP11.93□□□□□ -0.5
MCF2L-227ENST00000486806 SPON1Q9HCB6 807 aa11.93□□□□□ -0.5
MCF2L-227ENST00000486806 COPRSQ9NQ92 184 aa11.93□□□□□ -0.5
MCF2L-227ENST00000486806 KIAA1551Q9HCM1 1747 aa11.93□□□□□ -0.5
MCF2L-227ENST00000486806 SRGNP10124 158 aa11.92□□□□□ -0.5
MCF2L-227ENST00000486806 HOXA10P31260 410 aaPredicted RBP11.92□□□□□ -0.5
MCF2L-227ENST00000486806 IFIT5Q13325 482 aaKnown RBP11.92□□□□□ -0.5
MCF2L-227ENST00000486806 CCDC57Q2TAC2 916 aa11.92□□□□□ -0.5
MCF2L-227ENST00000486806 KLHDC4Q8TBB5 520 aa11.92□□□□□ -0.5
MCF2L-227ENST00000486806 SEC31BQ9NQW1 1179 aa11.92□□□□□ -0.5
MCF2L-227ENST00000486806 NOP58Q9Y2X3 529 aaKnown RBP11.92□□□□□ -0.5
MCF2L-227ENST00000486806 CHMP3Q9Y3E7 222 aa11.92□□□□□ -0.5
MCF2L-227ENST00000486806 ANKRD18BA2A2Z9 1011 aa11.91□□□□□ -0.5
MCF2L-227ENST00000486806 RWDD1Q9H446 243 aaPredicted RBP11.91□□□□□ -0.5
MCF2L-227ENST00000486806 PDZRN3Q9UPQ7 1066 aa11.91□□□□□ -0.5
MCF2L-227ENST00000486806 PA2G4Q9UQ80 394 aaKnown RBP11.91□□□□□ -0.5
MCF2L-227ENST00000486806 DLEC1Q9Y238 1755 aa11.9□□□□□ -0.5
MCF2L-227ENST00000486806 NPR1P16066 1061 aa11.9□□□□□ -0.5
MCF2L-227ENST00000486806 GRAPQ13588 217 aa11.9□□□□□ -0.5
MCF2L-227ENST00000486806 B4GALNT3Q6L9W6 998 aa11.9□□□□□ -0.5
MCF2L-227ENST00000486806 SMC5Q8IY18 1101 aa11.9□□□□□ -0.5
MCF2L-227ENST00000486806 GRAPLQ8TC17 118 aaPredicted RBP11.9□□□□□ -0.5
MCF2L-227ENST00000486806 RPGRQ92834 1020 aaKnown RBP11.9□□□□□ -0.5
MCF2L-227ENST00000486806 CELF1Q92879 486 aaKnown RBP11.9□□□□□ -0.5
MCF2L-227ENST00000486806 ZNF594Q96JF6 807 aaPredicted RBP11.9□□□□□ -0.5
MCF2L-227ENST00000486806 CCDC136Q96JN2 1154 aa11.9□□□□□ -0.5
MCF2L-227ENST00000486806 CDC5LQ99459 802 aaKnown RBP11.9□□□□□ -0.5
MCF2L-227ENST00000486806 DCTPP1Q9H773 170 aa11.9□□□□□ -0.5
MCF2L-227ENST00000486806 FBXO3Q9UK99 471 aa11.9□□□□□ -0.5
MCF2L-227ENST00000486806 CD2APQ9Y5K6 639 aa11.9□□□□□ -0.5
MCF2L-227ENST00000486806 CIAO1O76071 339 aa11.89□□□□□ -0.51
MCF2L-227ENST00000486806 TGFB2P61812 414 aa11.89□□□□□ -0.51
MCF2L-227ENST00000486806 STYK1Q6J9G0 422 aa11.89□□□□□ -0.51
MCF2L-227ENST00000486806 DDX46Q7L014 1031 aaKnown RBP11.89□□□□□ -0.51
MCF2L-227ENST00000486806 CENPQQ7L2Z9 268 aaPredicted RBP11.89□□□□□ -0.51
MCF2L-227ENST00000486806 ATG9AQ7Z3C6 839 aa11.89□□□□□ -0.51
MCF2L-227ENST00000486806 C2CD5Q86YS7 1000 aa11.89□□□□□ -0.51
MCF2L-227ENST00000486806 GCC1Q96CN9 775 aa11.89□□□□□ -0.51
MCF2L-227ENST00000486806 MASTLQ96GX5 879 aa11.89□□□□□ -0.51
MCF2L-227ENST00000486806 RBM17Q96I25 401 aaKnown RBP11.89□□□□□ -0.51
MCF2L-227ENST00000486806 CRAMP1Q96RY5 1269 aa11.89□□□□□ -0.51
MCF2L-227ENST00000486806 EXOC6BQ9Y2D4 811 aa11.89□□□□□ -0.51
MCF2L-227ENST00000486806 LRRC37AA6NMS7 1700 aa11.89□□□□□ -0.51
MCF2L-227ENST00000486806 EYA2O00167 538 aa11.88□□□□□ -0.51
MCF2L-227ENST00000486806 SURF6O75683 361 aaKnown RBP11.88□□□□□ -0.51
MCF2L-227ENST00000486806 CHRNA5P30532 468 aa11.88□□□□□ -0.51
MCF2L-227ENST00000486806 TAF7LQ5H9L4 462 aa11.88□□□□□ -0.51
MCF2L-227ENST00000486806 ANKRD18AQ8IVF6 992 aa11.88□□□□□ -0.51
MCF2L-227ENST00000486806 PUS3Q9BZE2 481 aaKnown RBP11.88□□□□□ -0.51
MCF2L-227ENST00000486806 SIL1Q9H173 461 aa11.88□□□□□ -0.51
MCF2L-227ENST00000486806 H0YIN7 160 aa11.87□□□□□ -0.51
MCF2L-227ENST00000486806 KCNA3P22001 575 aa11.87□□□□□ -0.51
MCF2L-227ENST00000486806 IGHMBP2P38935 993 aaKnown RBP11.87□□□□□ -0.51
MCF2L-227ENST00000486806 IL15P40933 162 aaPredicted RBP11.87□□□□□ -0.51
MCF2L-227ENST00000486806 RPS8P62241 208 aaKnown RBP11.87□□□□□ -0.51
MCF2L-227ENST00000486806 LRRC24Q50LG9 513 aa11.87□□□□□ -0.51
MCF2L-227ENST00000486806 HSP90AB4PQ58FF6 505 aa11.87□□□□□ -0.51
MCF2L-227ENST00000486806 VGLL2Q8N8G2 317 aa11.87□□□□□ -0.51
MCF2L-227ENST00000486806 BSDC1Q9NW68 430 aaPredicted RBP11.87□□□□□ -0.51
MCF2L-227ENST00000486806 RIPOR2Q9Y4F9 1068 aa11.87□□□□□ -0.51
MCF2L-227ENST00000486806 SNED1Q8TER0 1413 aa11.86□□□□□ -0.51
MCF2L-227ENST00000486806 RAB11FIP3O75154 756 aa11.86□□□□□ -0.51
MCF2L-227ENST00000486806 SASH1O94885 1247 aa11.86□□□□□ -0.51
MCF2L-227ENST00000486806 DPEP1P16444 411 aa11.86□□□□□ -0.51
MCF2L-227ENST00000486806 LDHAL6AQ6ZMR3 332 aa11.86□□□□□ -0.51
MCF2L-227ENST00000486806 TMC4Q7Z404 712 aa11.86□□□□□ -0.51
MCF2L-227ENST00000486806 SLC51AQ86UW1 340 aa11.86□□□□□ -0.51
MCF2L-227ENST00000486806 ERC1Q8IUD2 1116 aa11.86□□□□□ -0.51
MCF2L-227ENST00000486806 MPHOSPH8Q99549 860 aa11.86□□□□□ -0.51
MCF2L-227ENST00000486806 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.86□□□□□ -0.51
MCF2L-227ENST00000486806 ZNF609O15014 1411 aa11.86□□□□□ -0.51
MCF2L-227ENST00000486806 PPEF1O14829 653 aaPredicted RBP11.85□□□□□ -0.51
MCF2L-227ENST00000486806 BBOX1O75936 387 aa11.85□□□□□ -0.51
MCF2L-227ENST00000486806 ALDH1B1P30837 517 aa11.85□□□□□ -0.51
MCF2L-227ENST00000486806 G3BP1Q13283 466 aaKnown RBP eCLIP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms