RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 Q6ZUG5 572 aa15.59■□□□□ 0.09
HMGN1-216ENST00000486741 TLR7Q9NYK1 1049 aaKnown RBP15.59■□□□□ 0.09
HMGN1-216ENST00000486741 CCDC69A6NI79 296 aa15.58■□□□□ 0.09
HMGN1-216ENST00000486741 PRIM1P49642 420 aaKnown RBP15.58■□□□□ 0.09
HMGN1-216ENST00000486741 PTH1RQ03431 593 aa15.58■□□□□ 0.09
HMGN1-216ENST00000486741 ZNF396Q96N95 335 aaPredicted RBP15.58■□□□□ 0.09
HMGN1-216ENST00000486741 USP25Q9UHP3 1055 aa15.58■□□□□ 0.09
HMGN1-216ENST00000486741 DZIP3Q86Y13 1208 aaKnown RBP15.58■□□□□ 0.08
HMGN1-216ENST00000486741 AMOTL1Q8IY63 956 aa15.58■□□□□ 0.08
HMGN1-216ENST00000486741 CCDC39Q9UFE4 941 aa15.58■□□□□ 0.08
HMGN1-216ENST00000486741 MARCH6O60337 910 aa15.58■□□□□ 0.08
HMGN1-216ENST00000486741 KIAA1210Q9ULL0 1709 aa15.58■□□□□ 0.08
HMGN1-216ENST00000486741 GOLGA8BA8MQT2 603 aa15.57■□□□□ 0.08
HMGN1-216ENST00000486741 SAMD1Q6SPF0 538 aaPredicted RBP15.57■□□□□ 0.08
HMGN1-216ENST00000486741 A0A1B0GUL7 405 aa15.57■□□□□ 0.08
HMGN1-216ENST00000486741 POLR3DP05423 398 aaPredicted RBP15.57■□□□□ 0.08
HMGN1-216ENST00000486741 HCLS1P14317 486 aaPredicted RBP15.57■□□□□ 0.08
HMGN1-216ENST00000486741 SYT1P21579 422 aa15.57■□□□□ 0.08
HMGN1-216ENST00000486741 MED14O60244 1454 aa15.57■□□□□ 0.08
HMGN1-216ENST00000486741 TPD52L1Q16890 204 aaPredicted RBP15.57■□□□□ 0.08
HMGN1-216ENST00000486741 SEC62Q99442 399 aaKnown RBP15.57■□□□□ 0.08
HMGN1-216ENST00000486741 IRS4O14654 1257 aaPredicted RBP15.57■□□□□ 0.08
HMGN1-216ENST00000486741 LETM1O95202 739 aaPredicted RBP15.57■□□□□ 0.08
HMGN1-216ENST00000486741 SLC9C2Q5TAH2 1124 aa15.57■□□□□ 0.08
HMGN1-216ENST00000486741 VPS53Q5VIR6 699 aa15.57■□□□□ 0.08
HMGN1-216ENST00000486741 ANTXR1Q9H6X2 564 aa15.57■□□□□ 0.08
HMGN1-216ENST00000486741 MICU3Q86XE3 530 aa15.56■□□□□ 0.08
HMGN1-216ENST00000486741 ZC3H13Q5T200 1668 aaKnown RBP15.56■□□□□ 0.08
HMGN1-216ENST00000486741 IQSEC2Q5JU85 1478 aa15.56■□□□□ 0.08
HMGN1-216ENST00000486741 C8orf37Q96NL8 207 aa15.56■□□□□ 0.08
HMGN1-216ENST00000486741 CFAP45Q9UL16 551 aa15.56■□□□□ 0.08
HMGN1-216ENST00000486741 PTPRUQ92729 1446 aa15.56■□□□□ 0.08
HMGN1-216ENST00000486741 NIP7Q9Y221 180 aaKnown RBP eCLIP15.56■□□□□ 0.08
HMGN1-216ENST00000486741 MAP3K12Q12852 859 aa15.55■□□□□ 0.08
HMGN1-216ENST00000486741 RASEFQ8IZ41 740 aa15.55■□□□□ 0.08
HMGN1-216ENST00000486741 UBAC1Q9BSL1 405 aa15.55■□□□□ 0.08
HMGN1-216ENST00000486741 PREX1Q8TCU6 1659 aa15.55■□□□□ 0.08
HMGN1-216ENST00000486741 RAD50Q92878 1312 aa15.55■□□□□ 0.08
HMGN1-216ENST00000486741 CD163L1Q9NR16 1453 aa15.55■□□□□ 0.08
HMGN1-216ENST00000486741 MAP3K11Q16584 847 aa15.55■□□□□ 0.08
HMGN1-216ENST00000486741 SLC5A1P13866 664 aa15.55■□□□□ 0.08
HMGN1-216ENST00000486741 APOBRQ0VD83 1088 aa15.55■□□□□ 0.08
HMGN1-216ENST00000486741 CCDC183Q5T5S1 534 aa15.55■□□□□ 0.08
HMGN1-216ENST00000486741 C8orf76Q96K31 380 aa15.55■□□□□ 0.08
HMGN1-216ENST00000486741 A0A0D9SFI3 127 aa15.54■□□□□ 0.08
HMGN1-216ENST00000486741 ZPR1O75312 459 aa15.54■□□□□ 0.08
HMGN1-216ENST00000486741 RUFY3Q7L099 469 aa15.54■□□□□ 0.08
HMGN1-216ENST00000486741 EYA2O00167 538 aa15.54■□□□□ 0.08
HMGN1-216ENST00000486741 ASAP1Q9ULH1 1129 aa15.54■□□□□ 0.08
HMGN1-216ENST00000486741 CYP27B1O15528 508 aa15.54■□□□□ 0.08
HMGN1-216ENST00000486741 HSPA4P34932 840 aa15.54■□□□□ 0.08
HMGN1-216ENST00000486741 HMG20BQ9P0W2 317 aa15.54■□□□□ 0.08
HMGN1-216ENST00000486741 ZNF652Q9Y2D9 606 aa15.54■□□□□ 0.08
HMGN1-216ENST00000486741 PPLO60437 1756 aa15.54■□□□□ 0.08
HMGN1-216ENST00000486741 SLC27A2O14975 620 aa15.54■□□□□ 0.08
HMGN1-216ENST00000486741 F13A1P00488 732 aa15.54■□□□□ 0.08
HMGN1-216ENST00000486741 TRIM22Q8IYM9 498 aa15.54■□□□□ 0.08
HMGN1-216ENST00000486741 CCDC24Q8N4L8 307 aa15.53■□□□□ 0.08
HMGN1-216ENST00000486741 SCAND2PQ9GZW5 306 aaPredicted RBP15.53■□□□□ 0.08
HMGN1-216ENST00000486741 KDRP35968 1356 aa15.53■□□□□ 0.08
HMGN1-216ENST00000486741 KLF18A0A0U1RQI7 1052 aa15.53■□□□□ 0.08
HMGN1-216ENST00000486741 IFIT3O14879 490 aaKnown RBP15.53■□□□□ 0.08
HMGN1-216ENST00000486741 SMC2O95347 1197 aa15.53■□□□□ 0.08
HMGN1-216ENST00000486741 HMGB1P09429 215 aaKnown RBP15.53■□□□□ 0.08
HMGN1-216ENST00000486741 RXRAP19793 462 aa15.53■□□□□ 0.08
HMGN1-216ENST00000486741 LRRC24Q50LG9 513 aa15.52■□□□□ 0.08
HMGN1-216ENST00000486741 ORC3Q9UBD5 711 aaPredicted RBP15.52■□□□□ 0.08
HMGN1-216ENST00000486741 JAG2Q9Y219 1238 aa15.52■□□□□ 0.08
HMGN1-216ENST00000486741 TMEM131LA2VDJ0 1609 aa15.52■□□□□ 0.08
HMGN1-216ENST00000486741 RANBP6O60518 1105 aaKnown RBP15.52■□□□□ 0.08
HMGN1-216ENST00000486741 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.52■□□□□ 0.08
HMGN1-216ENST00000486741 FILIP1Q7Z7B0 1213 aa15.52■□□□□ 0.08
HMGN1-216ENST00000486741 ZNF335Q9H4Z2 1342 aaPredicted RBP15.52■□□□□ 0.08
HMGN1-216ENST00000486741 ADCK5Q3MIX3 580 aa15.51■□□□□ 0.07
HMGN1-216ENST00000486741 ITGA6P23229 1130 aa15.51■□□□□ 0.07
HMGN1-216ENST00000486741 UBE2HP62256 183 aa15.51■□□□□ 0.07
HMGN1-216ENST00000486741 CAVIN4Q5BKX8 364 aa15.51■□□□□ 0.07
HMGN1-216ENST00000486741 DIP2BQ9P265 1576 aa15.51■□□□□ 0.07
HMGN1-216ENST00000486741 USP31Q70CQ4 1352 aa15.51■□□□□ 0.07
HMGN1-216ENST00000486741 CCDC191Q8NCU4 936 aa15.51■□□□□ 0.07
HMGN1-216ENST00000486741 OSBPL3Q9H4L5 887 aa15.51■□□□□ 0.07
HMGN1-216ENST00000486741 ANKIB1Q9P2G1 1089 aa15.51■□□□□ 0.07
HMGN1-216ENST00000486741 UBAP1LF5GYI3 381 aa15.51■□□□□ 0.07
HMGN1-216ENST00000486741 GADD45BO75293 160 aaPredicted RBP15.51■□□□□ 0.07
HMGN1-216ENST00000486741 ATP2B2Q01814 1243 aa15.51■□□□□ 0.07
HMGN1-216ENST00000486741 PUS3Q9BZE2 481 aaKnown RBP15.51■□□□□ 0.07
HMGN1-216ENST00000486741 NCOA5Q9HCD5 579 aaKnown RBP15.51■□□□□ 0.07
HMGN1-216ENST00000486741 RNF113AO15541 343 aaKnown RBP15.5■□□□□ 0.07
HMGN1-216ENST00000486741 TAF5LO75529 589 aa15.5■□□□□ 0.07
HMGN1-216ENST00000486741 EPHA10Q5JZY3 1008 aa15.5■□□□□ 0.07
HMGN1-216ENST00000486741 ZSCAN30Q86W11 494 aa15.5■□□□□ 0.07
HMGN1-216ENST00000486741 MIGA1Q8NAN2 632 aa15.5■□□□□ 0.07
HMGN1-216ENST00000486741 INTS4Q96HW7 963 aaKnown RBP15.5■□□□□ 0.07
HMGN1-216ENST00000486741 STAP2Q9UGK3 403 aa15.5■□□□□ 0.07
HMGN1-216ENST00000486741 OVOS2A0A0J9YW53 1432 aa15.5■□□□□ 0.07
HMGN1-216ENST00000486741 OVOS2Q6IE36 1432 aa15.5■□□□□ 0.07
HMGN1-216ENST00000486741 XBP1P17861 261 aa15.5■□□□□ 0.07
HMGN1-216ENST00000486741 RBM10P98175 930 aaKnown RBP15.5■□□□□ 0.07
HMGN1-216ENST00000486741 ISM2Q6H9L7 571 aa15.5■□□□□ 0.07
HMGN1-216ENST00000486741 ZNF830Q96NB3 372 aaPredicted RBP15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms