RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 ATP5J2-PTCD1G3V325 749 aa10.21□□□□□ -0.77
USP40-216ENST00000485943 CHRNA5P30532 468 aa10.21□□□□□ -0.77
USP40-216ENST00000485943 TCIRG1Q13488 830 aa10.21□□□□□ -0.77
USP40-216ENST00000485943 PRR5LQ6MZQ0 368 aa10.21□□□□□ -0.77
USP40-216ENST00000485943 SLC4A10Q6U841 1118 aa10.21□□□□□ -0.77
USP40-216ENST00000485943 NUTM1Q86Y26 1132 aa10.21□□□□□ -0.77
USP40-216ENST00000485943 MICALL2Q8IY33 904 aa10.21□□□□□ -0.77
USP40-216ENST00000485943 TSPYL6Q8N831 410 aa10.21□□□□□ -0.77
USP40-216ENST00000485943 SP7Q8TDD2 431 aaPredicted RBP10.21□□□□□ -0.77
USP40-216ENST00000485943 BCL2L12Q9HB09 334 aa10.21□□□□□ -0.77
USP40-216ENST00000485943 GPHNQ9NQX3 736 aaPredicted RBP10.21□□□□□ -0.77
USP40-216ENST00000485943 ALDH1B1P30837 517 aa10.2□□□□□ -0.78
USP40-216ENST00000485943 CHD4Q14839 1912 aa10.2□□□□□ -0.78
USP40-216ENST00000485943 RTL5Q5HYW3 569 aaPredicted RBP10.2□□□□□ -0.78
USP40-216ENST00000485943 SOGA3Q5TF21 947 aa10.2□□□□□ -0.78
USP40-216ENST00000485943 SH3TC1Q8TE82 1336 aa10.2□□□□□ -0.78
USP40-216ENST00000485943 MASTLQ96GX5 879 aa10.2□□□□□ -0.78
USP40-216ENST00000485943 RBM17Q96I25 401 aaKnown RBP10.2□□□□□ -0.78
USP40-216ENST00000485943 PHAXQ9H814 394 aaKnown RBP10.2□□□□□ -0.78
USP40-216ENST00000485943 SMC4Q9NTJ3 1288 aa10.2□□□□□ -0.78
USP40-216ENST00000485943 MAP3K2Q9Y2U5 619 aa10.2□□□□□ -0.78
USP40-216ENST00000485943 CACNA1SQ13698 1873 aa10.19□□□□□ -0.78
USP40-216ENST00000485943 SRCAPQ6ZRS2 3230 aa10.19□□□□□ -0.78
USP40-216ENST00000485943 ATP10DQ9P241 1426 aa10.19□□□□□ -0.78
USP40-216ENST00000485943 RNF123Q5XPI4 1314 aa10.19□□□□□ -0.78
USP40-216ENST00000485943 NPR1P16066 1061 aa10.19□□□□□ -0.78
USP40-216ENST00000485943 FLIIQ13045 1269 aa10.19□□□□□ -0.78
USP40-216ENST00000485943 IER5LQ5T953 404 aa10.19□□□□□ -0.78
USP40-216ENST00000485943 DDX46Q7L014 1031 aaKnown RBP10.19□□□□□ -0.78
USP40-216ENST00000485943 ZNF428Q96B54 188 aa10.19□□□□□ -0.78
USP40-216ENST00000485943 CWC25Q9NXE8 425 aaPredicted RBP10.19□□□□□ -0.78
USP40-216ENST00000485943 ANKRD36CQ5JPF3 1778 aa10.19□□□□□ -0.78
USP40-216ENST00000485943 PI4KAP2A4QPH2 592 aa10.18□□□□□ -0.78
USP40-216ENST00000485943 PDIA6Q15084 440 aa10.18□□□□□ -0.78
USP40-216ENST00000485943 ERFEQ4G0M1 354 aa10.18□□□□□ -0.78
USP40-216ENST00000485943 PPP1R15BQ5SWA1 713 aa10.18□□□□□ -0.78
USP40-216ENST00000485943 SUSD4Q5VX71 490 aa10.18□□□□□ -0.78
USP40-216ENST00000485943 KSR2Q6VAB6 950 aa10.18□□□□□ -0.78
USP40-216ENST00000485943 PI4KAP1Q8N8J0 262 aa10.18□□□□□ -0.78
USP40-216ENST00000485943 TMEM121BQ9BXQ6 578 aaPredicted RBP10.18□□□□□ -0.78
USP40-216ENST00000485943 PXDNLA1KZ92 1463 aa10.17□□□□□ -0.78
USP40-216ENST00000485943 KIF13BQ9NQT8 1826 aa10.17□□□□□ -0.78
USP40-216ENST00000485943 ARFGEF2Q9Y6D5 1785 aa10.17□□□□□ -0.78
USP40-216ENST00000485943 CT47B1P0C2W7 299 aaPredicted RBP10.17□□□□□ -0.78
USP40-216ENST00000485943 SLFN5Q08AF3 891 aa10.17□□□□□ -0.78
USP40-216ENST00000485943 STYK1Q6J9G0 422 aa10.17□□□□□ -0.78
USP40-216ENST00000485943 ZNF34Q8IZ26 560 aa10.17□□□□□ -0.78
USP40-216ENST00000485943 DNAAF4Q8WXU2 420 aa10.17□□□□□ -0.78
USP40-216ENST00000485943 YTHDC1Q96MU7 727 aaKnown RBP10.17□□□□□ -0.78
USP40-216ENST00000485943 C9orf78Q9NZ63 289 aaPredicted RBP10.17□□□□□ -0.78
USP40-216ENST00000485943 CHMP3Q9Y3E7 222 aa10.17□□□□□ -0.78
USP40-216ENST00000485943 G3V3G9 751 aa10.16□□□□□ -0.78
USP40-216ENST00000485943 C21orf2O43822 256 aa10.16□□□□□ -0.78
USP40-216ENST00000485943 VAMP4O75379 141 aa10.16□□□□□ -0.78
USP40-216ENST00000485943 NLRP10Q86W26 655 aa10.16□□□□□ -0.78
USP40-216ENST00000485943 CCDC191Q8NCU4 936 aa10.16□□□□□ -0.78
USP40-216ENST00000485943 METTL22Q9BUU2 404 aaPredicted RBP10.16□□□□□ -0.78
USP40-216ENST00000485943 BCL2L13Q9BXK5 485 aa10.16□□□□□ -0.78
USP40-216ENST00000485943 OCEL1Q9H607 264 aa10.16□□□□□ -0.78
USP40-216ENST00000485943 IBTKQ9P2D0 1353 aaPredicted RBP10.15□□□□□ -0.78
USP40-216ENST00000485943 UBN2Q6ZU65 1347 aa10.15□□□□□ -0.78
USP40-216ENST00000485943 IRS4O14654 1257 aaPredicted RBP10.15□□□□□ -0.78
USP40-216ENST00000485943 IPO8O15397 1037 aaKnown RBP10.15□□□□□ -0.78
USP40-216ENST00000485943 GABBR2O75899 941 aa10.15□□□□□ -0.78
USP40-216ENST00000485943 SRGNP10124 158 aa10.15□□□□□ -0.78
USP40-216ENST00000485943 HCLS1P14317 486 aaPredicted RBP10.15□□□□□ -0.78
USP40-216ENST00000485943 YBX3P16989 372 aaKnown RBP eCLIP10.15□□□□□ -0.78
USP40-216ENST00000485943 DSG2Q14126 1118 aa10.15□□□□□ -0.78
USP40-216ENST00000485943 ALDH1L2Q3SY69 923 aa10.15□□□□□ -0.78
USP40-216ENST00000485943 CCDC152Q4G0S7 254 aa10.15□□□□□ -0.78
USP40-216ENST00000485943 CCDC93Q567U6 631 aa10.15□□□□□ -0.78
USP40-216ENST00000485943 TAF7LQ5H9L4 462 aa10.15□□□□□ -0.78
USP40-216ENST00000485943 PRPF40BQ6NWY9 871 aaKnown RBP10.15□□□□□ -0.78
USP40-216ENST00000485943 FRAT1Q92837 279 aaPredicted RBP10.15□□□□□ -0.78
USP40-216ENST00000485943 FAM89AQ96GI7 184 aa10.15□□□□□ -0.78
USP40-216ENST00000485943 CDCA7LQ96GN5 454 aa10.15□□□□□ -0.78
USP40-216ENST00000485943 PTPRCP08575 1304 aa10.14□□□□□ -0.79
USP40-216ENST00000485943 KIF16BQ96L93 1317 aa10.14□□□□□ -0.79
USP40-216ENST00000485943 NRXN2Q9P2S2 1712 aa10.14□□□□□ -0.79
USP40-216ENST00000485943 PPEF1O14829 653 aaPredicted RBP10.14□□□□□ -0.79
USP40-216ENST00000485943 NTSR2O95665 410 aa10.14□□□□□ -0.79
USP40-216ENST00000485943 C16orf71Q8IYS4 520 aaPredicted RBP10.14□□□□□ -0.79
USP40-216ENST00000485943 ZBTB38Q8NAP3 1195 aaPredicted RBP10.14□□□□□ -0.79
USP40-216ENST00000485943 ZNF526Q8TF50 670 aaPredicted RBP10.14□□□□□ -0.79
USP40-216ENST00000485943 SRCIN1Q9C0H9 1055 aa10.14□□□□□ -0.79
USP40-216ENST00000485943 TAOK3Q9H2K8 898 aa10.14□□□□□ -0.79
USP40-216ENST00000485943 RNF181Q9P0P0 153 aa10.14□□□□□ -0.79
USP40-216ENST00000485943 HDAC5Q9UQL6 1122 aa10.14□□□□□ -0.79
USP40-216ENST00000485943 ZBED9Q6R2W3 1325 aa10.13□□□□□ -0.79
USP40-216ENST00000485943 ARFGEF1Q9Y6D6 1849 aa10.13□□□□□ -0.79
USP40-216ENST00000485943 TULP1O00294 542 aaPredicted RBP10.13□□□□□ -0.79
USP40-216ENST00000485943 FTSJ3Q8IY81 847 aaKnown RBP10.13□□□□□ -0.79
USP40-216ENST00000485943 RTKN2Q8IZC4 609 aa10.13□□□□□ -0.79
USP40-216ENST00000485943 LINS1Q8NG48 757 aa10.13□□□□□ -0.79
USP40-216ENST00000485943 CDC5LQ99459 802 aaKnown RBP10.13□□□□□ -0.79
USP40-216ENST00000485943 API5Q9BZZ5 524 aaKnown RBP10.13□□□□□ -0.79
USP40-216ENST00000485943 EMILIN3Q9NT22 766 aa10.13□□□□□ -0.79
USP40-216ENST00000485943 BOLA1Q9Y3E2 137 aa10.13□□□□□ -0.79
USP40-216ENST00000485943 ZNF521Q96K83 1311 aa10.12□□□□□ -0.79
USP40-216ENST00000485943 PDE8AO60658 829 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms