RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 ZSWIM6Q9HCJ5 1215 aa7.5□□□□□ -1.21
CUX1-208ENST00000485792 IL16Q14005 1332 aa7.5□□□□□ -1.21
CUX1-208ENST00000485792 A0A087WZG4 1122 aa7.49□□□□□ -1.21
CUX1-208ENST00000485792 TGFB2P61812 414 aa7.49□□□□□ -1.21
CUX1-208ENST00000485792 PRR5LQ6MZQ0 368 aa7.49□□□□□ -1.21
CUX1-208ENST00000485792 NGEFQ8N5V2 710 aa7.49□□□□□ -1.21
CUX1-208ENST00000485792 NECTIN2Q92692 538 aa7.49□□□□□ -1.21
CUX1-208ENST00000485792 MARVELD3Q96A59 401 aa7.49□□□□□ -1.21
CUX1-208ENST00000485792 IFT57Q9NWB7 429 aa7.49□□□□□ -1.21
CUX1-208ENST00000485792 CHPF2Q9P2E5 772 aa7.49□□□□□ -1.21
CUX1-208ENST00000485792 PPP1R1BQ9UD71 204 aaPredicted RBP7.49□□□□□ -1.21
CUX1-208ENST00000485792 TSPYL4Q9UJ04 414 aa7.49□□□□□ -1.21
CUX1-208ENST00000485792 RIC1Q4ADV7 1423 aa7.49□□□□□ -1.21
CUX1-208ENST00000485792 KLRG2A4D1S0 409 aaPredicted RBP7.48□□□□□ -1.21
CUX1-208ENST00000485792 ERVV-1B6SEH8 477 aa7.48□□□□□ -1.21
CUX1-208ENST00000485792 HOXB1P14653 301 aaPredicted RBP7.48□□□□□ -1.21
CUX1-208ENST00000485792 DPEP1P16444 411 aa7.48□□□□□ -1.21
CUX1-208ENST00000485792 G2E3Q7L622 706 aa7.48□□□□□ -1.21
CUX1-208ENST00000485792 DZIP3Q86Y13 1208 aaKnown RBP7.48□□□□□ -1.21
CUX1-208ENST00000485792 SYNE4Q8N205 404 aa7.48□□□□□ -1.21
CUX1-208ENST00000485792 A0A0G2JLW4 131 aa7.47□□□□□ -1.21
CUX1-208ENST00000485792 CCER2I3L3R5 266 aa7.47□□□□□ -1.21
CUX1-208ENST00000485792 DPYSL4O14531 572 aa7.47□□□□□ -1.21
CUX1-208ENST00000485792 TCERG1O14776 1098 aaKnown RBP7.47□□□□□ -1.21
CUX1-208ENST00000485792 ZPR1O75312 459 aa7.47□□□□□ -1.21
CUX1-208ENST00000485792 SLC34A2O95436 690 aa7.47□□□□□ -1.21
CUX1-208ENST00000485792 NTSR2O95665 410 aa7.47□□□□□ -1.21
CUX1-208ENST00000485792 MYL6BP14649 208 aa7.47□□□□□ -1.21
CUX1-208ENST00000485792 GNAI1P63096 354 aa7.47□□□□□ -1.21
CUX1-208ENST00000485792 OLFM4Q6UX06 510 aa7.47□□□□□ -1.21
CUX1-208ENST00000485792 OXER1Q8TDS5 423 aa7.47□□□□□ -1.21
CUX1-208ENST00000485792 ZBTB3Q9H5J0 574 aa7.47□□□□□ -1.21
CUX1-208ENST00000485792 PHAXQ9H814 394 aaKnown RBP7.47□□□□□ -1.21
CUX1-208ENST00000485792 MAP3K15Q6ZN16 1313 aa7.47□□□□□ -1.21
CUX1-208ENST00000485792 IBTKQ9P2D0 1353 aaPredicted RBP7.46□□□□□ -1.21
CUX1-208ENST00000485792 ADAMTSL1Q8N6G6 1762 aa7.46□□□□□ -1.21
CUX1-208ENST00000485792 SCN9AQ15858 1988 aa7.46□□□□□ -1.21
CUX1-208ENST00000485792 DUSP27Q5VZP5 1158 aa7.46□□□□□ -1.22
CUX1-208ENST00000485792 BICDL1Q6ZP65 573 aa7.46□□□□□ -1.22
CUX1-208ENST00000485792 WDR63Q8IWG1 891 aa7.46□□□□□ -1.22
CUX1-208ENST00000485792 FAM9BQ8IZU0 186 aa7.46□□□□□ -1.22
CUX1-208ENST00000485792 CDCA7LQ96GN5 454 aa7.46□□□□□ -1.22
CUX1-208ENST00000485792 DDX21Q9NR30 783 aaKnown RBP eCLIP7.46□□□□□ -1.22
CUX1-208ENST00000485792 ZNF330Q9Y3S2 320 aaPredicted RBP7.46□□□□□ -1.22
CUX1-208ENST00000485792 SALL2Q9Y467 1007 aaPredicted RBP7.46□□□□□ -1.22
CUX1-208ENST00000485792 PSME4Q14997 1843 aa7.45□□□□□ -1.22
CUX1-208ENST00000485792 ELL2O00472 640 aaPredicted RBP7.45□□□□□ -1.22
CUX1-208ENST00000485792 SERPINB2P05120 415 aa7.45□□□□□ -1.22
CUX1-208ENST00000485792 CALD1Q05682 793 aaKnown RBP7.45□□□□□ -1.22
CUX1-208ENST00000485792 SUSD4Q5VX71 490 aa7.45□□□□□ -1.22
CUX1-208ENST00000485792 GIGYF2Q6Y7W6 1299 aaKnown RBP7.45□□□□□ -1.22
CUX1-208ENST00000485792 NUTM1Q86Y26 1132 aa7.45□□□□□ -1.22
CUX1-208ENST00000485792 ZNF34Q8IZ26 560 aa7.45□□□□□ -1.22
CUX1-208ENST00000485792 XAGE3Q8WTP9 111 aa7.45□□□□□ -1.22
CUX1-208ENST00000485792 PTCD2Q8WV60 388 aaKnown RBP7.45□□□□□ -1.22
CUX1-208ENST00000485792 PCDH10Q9P2E7 1040 aa7.45□□□□□ -1.22
CUX1-208ENST00000485792 LAS1LQ9Y4W2 734 aaKnown RBP7.45□□□□□ -1.22
CUX1-208ENST00000485792 PARP3Q9Y6F1 533 aa7.45□□□□□ -1.22
CUX1-208ENST00000485792 NFKBIEO00221 500 aa7.44□□□□□ -1.22
CUX1-208ENST00000485792 EIF2S2P20042 333 aaKnown RBP7.44□□□□□ -1.22
CUX1-208ENST00000485792 GPTP24298 496 aa7.44□□□□□ -1.22
CUX1-208ENST00000485792 RASSF7Q02833 373 aa7.44□□□□□ -1.22
CUX1-208ENST00000485792 TRMT2AQ8IZ69 625 aaKnown RBP7.44□□□□□ -1.22
CUX1-208ENST00000485792 FAM205CA6NFA0 338 aa7.43□□□□□ -1.22
CUX1-208ENST00000485792 TRIM28Q13263 835 aaKnown RBP7.43□□□□□ -1.22
CUX1-208ENST00000485792 CRY2Q49AN0 593 aa7.43□□□□□ -1.22
CUX1-208ENST00000485792 ERFEQ4G0M1 354 aa7.43□□□□□ -1.22
CUX1-208ENST00000485792 ARSIQ5FYB1 569 aa7.43□□□□□ -1.22
CUX1-208ENST00000485792 HDGFL1Q5TGJ6 251 aa7.43□□□□□ -1.22
CUX1-208ENST00000485792 GPR153Q6NV75 609 aa7.43□□□□□ -1.22
CUX1-208ENST00000485792 COPS6Q7L5N1 327 aa7.43□□□□□ -1.22
CUX1-208ENST00000485792 C7orf43Q8WVR3 580 aa7.43□□□□□ -1.22
CUX1-208ENST00000485792 BRIP1Q9BX63 1249 aa7.43□□□□□ -1.22
CUX1-208ENST00000485792 DBF4Q9UBU7 674 aaPredicted RBP7.43□□□□□ -1.22
CUX1-208ENST00000485792 PDZRN3Q9UPQ7 1066 aa7.43□□□□□ -1.22
CUX1-208ENST00000485792 WDR90Q96KV7 1748 aa7.42□□□□□ -1.22
CUX1-208ENST00000485792 SPDYE16A6NNV3 312 aaPredicted RBP7.42□□□□□ -1.22
CUX1-208ENST00000485792 GRIN3BO60391 1043 aa7.42□□□□□ -1.22
CUX1-208ENST00000485792 VAMP4O75379 141 aa7.42□□□□□ -1.22
CUX1-208ENST00000485792 IGKV5-2P06315 115 aa7.42□□□□□ -1.22
CUX1-208ENST00000485792 SRGNP10124 158 aa7.42□□□□□ -1.22
CUX1-208ENST00000485792 MAP3K9P80192 1104 aa7.42□□□□□ -1.22
CUX1-208ENST00000485792 EXOSC9Q06265 439 aaKnown RBP7.42□□□□□ -1.22
CUX1-208ENST00000485792 SLC10A5Q5PT55 438 aa7.42□□□□□ -1.22
CUX1-208ENST00000485792 SETDB2Q96T68 719 aa7.42□□□□□ -1.22
CUX1-208ENST00000485792 ISCA1Q9BUE6 129 aa7.42□□□□□ -1.22
CUX1-208ENST00000485792 TNNQ9UQP3 1299 aa7.42□□□□□ -1.22
CUX1-208ENST00000485792 ZNF652Q9Y2D9 606 aa7.42□□□□□ -1.22
CUX1-208ENST00000485792 PCDHGA4Q9Y5G9 962 aa7.42□□□□□ -1.22
CUX1-208ENST00000485792 SCN4AP35499 1836 aa7.41□□□□□ -1.22
CUX1-208ENST00000485792 POLR2AP24928 1970 aaKnown RBP7.41□□□□□ -1.22
CUX1-208ENST00000485792 FAM177BA6PVY3 158 aa7.41□□□□□ -1.22
CUX1-208ENST00000485792 SEMA3EO15041 775 aa7.41□□□□□ -1.22
CUX1-208ENST00000485792 HOXA10P31260 410 aaPredicted RBP7.41□□□□□ -1.22
CUX1-208ENST00000485792 CASP7P55210 303 aa7.41□□□□□ -1.22
CUX1-208ENST00000485792 NLRP10Q86W26 655 aa7.41□□□□□ -1.22
CUX1-208ENST00000485792 CDAN1Q8IWY9 1227 aa7.41□□□□□ -1.22
CUX1-208ENST00000485792 PLBD2Q8NHP8 589 aa7.41□□□□□ -1.22
CUX1-208ENST00000485792 JARID2Q92833 1246 aaPredicted RBP7.41□□□□□ -1.22
CUX1-208ENST00000485792 HS3ST6Q96QI5 342 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms