RNA–Protein interactions for RNA: ENST00000485627.1

CTSA-208, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 695 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-208ENST00000485627 CDHR2Q9BYE9 1310 aa11.73□□□□□ -0.53
CTSA-208ENST00000485627 PA2G4Q9UQ80 394 aaKnown RBP11.73□□□□□ -0.53
CTSA-208ENST00000485627 NIP7Q9Y221 180 aaKnown RBP eCLIP11.73□□□□□ -0.53
CTSA-208ENST00000485627 ABCB7O75027 752 aa11.72□□□□□ -0.53
CTSA-208ENST00000485627 YBX3P16989 372 aaKnown RBP eCLIP11.72□□□□□ -0.53
CTSA-208ENST00000485627 FOXO4P98177 505 aa11.72□□□□□ -0.53
CTSA-208ENST00000485627 CCDC57Q2TAC2 916 aa11.72□□□□□ -0.53
CTSA-208ENST00000485627 C8orf34Q49A92 452 aa11.72□□□□□ -0.53
CTSA-208ENST00000485627 BMP2KLQ5H9B9 411 aa11.72□□□□□ -0.53
CTSA-208ENST00000485627 TAF7LQ5H9L4 462 aa11.72□□□□□ -0.53
CTSA-208ENST00000485627 TRAPPC3LQ5T215 181 aa11.72□□□□□ -0.53
CTSA-208ENST00000485627 GPATCH3Q96I76 525 aa11.72□□□□□ -0.53
CTSA-208ENST00000485627 PLA2G12BQ9BX93 195 aa11.72□□□□□ -0.53
CTSA-208ENST00000485627 SIL1Q9H173 461 aa11.72□□□□□ -0.53
CTSA-208ENST00000485627 IL1RAPL2Q9NP60 686 aa11.72□□□□□ -0.53
CTSA-208ENST00000485627 LRRC4BQ9NT99 713 aa11.72□□□□□ -0.53
CTSA-208ENST00000485627 COL5A3P25940 1745 aaPredicted RBP11.72□□□□□ -0.53
CTSA-208ENST00000485627 SH3TC1Q8TE82 1336 aa11.71□□□□□ -0.53
CTSA-208ENST00000485627 FAM177BA6PVY3 158 aa11.71□□□□□ -0.53
CTSA-208ENST00000485627 IRS4O14654 1257 aaPredicted RBP11.71□□□□□ -0.53
CTSA-208ENST00000485627 IFIT2P09913 472 aaKnown RBP11.71□□□□□ -0.53
CTSA-208ENST00000485627 MX1P20591 662 aa11.71□□□□□ -0.53
CTSA-208ENST00000485627 RFC4P35249 363 aa11.71□□□□□ -0.53
CTSA-208ENST00000485627 TTC22Q5TAA0 569 aa11.71□□□□□ -0.53
CTSA-208ENST00000485627 UPF2Q9HAU5 1272 aaKnown RBP11.71□□□□□ -0.53
CTSA-208ENST00000485627 COPRSQ9NQ92 184 aa11.71□□□□□ -0.53
CTSA-208ENST00000485627 NARFQ9UHQ1 456 aa11.71□□□□□ -0.53
CTSA-208ENST00000485627 UBN2Q6ZU65 1347 aa11.7□□□□□ -0.54
CTSA-208ENST00000485627 PDE8AO60658 829 aa11.7□□□□□ -0.54
CTSA-208ENST00000485627 EIF5BO60841 1220 aaKnown RBP11.7□□□□□ -0.54
CTSA-208ENST00000485627 PHF14O94880 888 aa11.7□□□□□ -0.54
CTSA-208ENST00000485627 PDE1AP54750 535 aa11.7□□□□□ -0.54
CTSA-208ENST00000485627 IFIT5Q13325 482 aaKnown RBP11.7□□□□□ -0.54
CTSA-208ENST00000485627 SUSD4Q5VX71 490 aa11.7□□□□□ -0.54
CTSA-208ENST00000485627 USPL1Q5W0Q7 1092 aa11.7□□□□□ -0.54
CTSA-208ENST00000485627 OTUD7AQ8TE49 926 aaPredicted RBP11.7□□□□□ -0.54
CTSA-208ENST00000485627 OSBPL3Q9H4L5 887 aa11.7□□□□□ -0.54
CTSA-208ENST00000485627 AOX1Q06278 1338 aa11.69□□□□□ -0.54
CTSA-208ENST00000485627 MYH14Q7Z406 1995 aaKnown RBP11.69□□□□□ -0.54
CTSA-208ENST00000485627 GTF2E1P29083 439 aaPredicted RBP11.69□□□□□ -0.54
CTSA-208ENST00000485627 RFX5P48382 616 aaPredicted RBP11.69□□□□□ -0.54
CTSA-208ENST00000485627 CTSWP56202 376 aa11.69□□□□□ -0.54
CTSA-208ENST00000485627 PTPN12Q05209 780 aaKnown RBP11.69□□□□□ -0.54
CTSA-208ENST00000485627 CASC1Q6TDU7 716 aa11.69□□□□□ -0.54
CTSA-208ENST00000485627 NUTM1Q86Y26 1132 aa11.69□□□□□ -0.54
CTSA-208ENST00000485627 IFNLR1Q8IU57 520 aaPredicted RBP11.69□□□□□ -0.54
CTSA-208ENST00000485627 KLHDC4Q8TBB5 520 aa11.69□□□□□ -0.54
CTSA-208ENST00000485627 ZNF526Q8TF50 670 aaPredicted RBP11.69□□□□□ -0.54
CTSA-208ENST00000485627 ARHGEF1Q92888 912 aaKnown RBP11.69□□□□□ -0.54
CTSA-208ENST00000485627 SETDB2Q96T68 719 aa11.69□□□□□ -0.54
CTSA-208ENST00000485627 NYXQ9GZU5 481 aa11.69□□□□□ -0.54
CTSA-208ENST00000485627 LY75O60449 1722 aa11.69□□□□□ -0.54
CTSA-208ENST00000485627 ANKRD18BA2A2Z9 1011 aa11.68□□□□□ -0.54
CTSA-208ENST00000485627 ERC2O15083 957 aa11.68□□□□□ -0.54
CTSA-208ENST00000485627 NPHP1O15259 732 aa11.68□□□□□ -0.54
CTSA-208ENST00000485627 CSF1RP07333 972 aa11.68□□□□□ -0.54
CTSA-208ENST00000485627 ANP32AP39687 249 aaKnown RBP11.68□□□□□ -0.54
CTSA-208ENST00000485627 IL15P40933 162 aaPredicted RBP11.68□□□□□ -0.54
CTSA-208ENST00000485627 BICDL1Q6ZP65 573 aa11.68□□□□□ -0.54
CTSA-208ENST00000485627 AACSQ86V21 672 aa11.68□□□□□ -0.54
CTSA-208ENST00000485627 STAP2Q9UGK3 403 aa11.68□□□□□ -0.54
CTSA-208ENST00000485627 SRP68Q9UHB9 627 aaKnown RBP11.68□□□□□ -0.54
CTSA-208ENST00000485627 NUP98P52948 1817 aa11.67□□□□□ -0.54
CTSA-208ENST00000485627 ANKRD36CQ5JPF3 1778 aa11.67□□□□□ -0.54
CTSA-208ENST00000485627 CDC45O75419 566 aa11.67□□□□□ -0.54
CTSA-208ENST00000485627 SSFA2P28290 1259 aa11.67□□□□□ -0.54
CTSA-208ENST00000485627 C1QBPQ07021 282 aaKnown RBP11.67□□□□□ -0.54
CTSA-208ENST00000485627 SYNE4Q8N205 404 aa11.67□□□□□ -0.54
CTSA-208ENST00000485627 TTLL11Q8NHH1 800 aa11.67□□□□□ -0.54
CTSA-208ENST00000485627 CCDC85AQ96PX6 553 aaPredicted RBP11.67□□□□□ -0.54
CTSA-208ENST00000485627 C4BP0C0L5 1744 aa11.66□□□□□ -0.54
CTSA-208ENST00000485627 TTC41PQ6P2S7 1318 aa11.66□□□□□ -0.54
CTSA-208ENST00000485627 PNPLA7Q6ZV29 1317 aa11.66□□□□□ -0.54
CTSA-208ENST00000485627 SALL3Q9BXA9 1300 aa11.66□□□□□ -0.54
CTSA-208ENST00000485627 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.66□□□□□ -0.54
CTSA-208ENST00000485627 TRIM6-TRIM34B2RNG4 842 aa11.66□□□□□ -0.54
CTSA-208ENST00000485627 EYA2O00167 538 aa11.66□□□□□ -0.54
CTSA-208ENST00000485627 CIAO1O76071 339 aa11.66□□□□□ -0.54
CTSA-208ENST00000485627 SASH1O94885 1247 aa11.66□□□□□ -0.54
CTSA-208ENST00000485627 NTSR2O95665 410 aa11.66□□□□□ -0.54
CTSA-208ENST00000485627 HCLS1P14317 486 aaPredicted RBP11.66□□□□□ -0.54
CTSA-208ENST00000485627 GSPT1P15170 499 aaKnown RBP11.66□□□□□ -0.54
CTSA-208ENST00000485627 ITGA6P23229 1130 aa11.66□□□□□ -0.54
CTSA-208ENST00000485627 CCDC152Q4G0S7 254 aa11.66□□□□□ -0.54
CTSA-208ENST00000485627 TBC1D9BQ66K14 1250 aa11.66□□□□□ -0.54
CTSA-208ENST00000485627 SMIM5Q71RC9 77 aa11.66□□□□□ -0.54
CTSA-208ENST00000485627 AKT1S1Q96B36 256 aa11.66□□□□□ -0.54
CTSA-208ENST00000485627 CEP126Q9P2H0 1117 aa11.66□□□□□ -0.54
CTSA-208ENST00000485627 ZBTB12Q9Y330 459 aaPredicted RBP11.66□□□□□ -0.54
CTSA-208ENST00000485627 USP42Q9H9J4 1324 aaKnown RBP11.65□□□□□ -0.54
CTSA-208ENST00000485627 GLRX3O76003 335 aaKnown RBP11.65□□□□□ -0.54
CTSA-208ENST00000485627 SDSP20132 328 aa11.65□□□□□ -0.54
CTSA-208ENST00000485627 TFCP2Q12800 502 aa11.65□□□□□ -0.54
CTSA-208ENST00000485627 TSHZ3Q63HK5 1081 aa11.65□□□□□ -0.54
CTSA-208ENST00000485627 TPTE2Q6XPS3 522 aa11.65□□□□□ -0.54
CTSA-208ENST00000485627 NBPF5PQ86XG9 351 aaPredicted RBP11.65□□□□□ -0.54
CTSA-208ENST00000485627 RILPL2Q969X0 211 aa11.65□□□□□ -0.54
CTSA-208ENST00000485627 ZNF594Q96JF6 807 aaPredicted RBP11.65□□□□□ -0.54
CTSA-208ENST00000485627 CCDC8Q9H0W5 538 aaPredicted RBP11.65□□□□□ -0.54
CTSA-208ENST00000485627 GREM2Q9H772 168 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms