RNA–Protein interactions for RNA: ENST00000483941.1

SMAD9-204, Transcript of SMAD family member 9, humanhuman

TSL 3

Gene SMAD9, Length 545 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-204ENST00000483941 LRRFIP2Q9Y608 721 aaKnown RBP17.39■□□□□ 0.37
SMAD9-204ENST00000483941 USP42Q9H9J4 1324 aaKnown RBP17.39■□□□□ 0.37
SMAD9-204ENST00000483941 PCCAP05165 728 aaPredicted RBP17.38■□□□□ 0.37
SMAD9-204ENST00000483941 HSPA1AP0DMV8 641 aaKnown RBP17.38■□□□□ 0.37
SMAD9-204ENST00000483941 HSPA1BP0DMV9 641 aaKnown RBP17.38■□□□□ 0.37
SMAD9-204ENST00000483941 CHRNA5P30532 468 aa17.38■□□□□ 0.37
SMAD9-204ENST00000483941 HLFQ16534 295 aa17.38■□□□□ 0.37
SMAD9-204ENST00000483941 ZNF34Q8IZ26 560 aa17.38■□□□□ 0.37
SMAD9-204ENST00000483941 ARFGEF2Q9Y6D5 1785 aa17.38■□□□□ 0.37
SMAD9-204ENST00000483941 IGHDP01880 384 aa17.37■□□□□ 0.37
SMAD9-204ENST00000483941 MTX1Q13505 466 aa17.37■□□□□ 0.37
SMAD9-204ENST00000483941 NLRP10Q86W26 655 aa17.37■□□□□ 0.37
SMAD9-204ENST00000483941 NRXN2Q9P2S2 1712 aa17.37■□□□□ 0.37
SMAD9-204ENST00000483941 RASSF7Q02833 373 aa17.36■□□□□ 0.37
SMAD9-204ENST00000483941 HSP90AB4PQ58FF6 505 aa17.36■□□□□ 0.37
SMAD9-204ENST00000483941 UBE3BQ7Z3V4 1068 aa17.36■□□□□ 0.37
SMAD9-204ENST00000483941 UTP14AQ9BVJ6 771 aaKnown RBP17.36■□□□□ 0.37
SMAD9-204ENST00000483941 SMC5Q8IY18 1101 aa17.35■□□□□ 0.37
SMAD9-204ENST00000483941 NYXQ9GZU5 481 aa17.35■□□□□ 0.37
SMAD9-204ENST00000483941 TRMT112Q9UI30 125 aaKnown RBP17.35■□□□□ 0.37
SMAD9-204ENST00000483941 NIP7Q9Y221 180 aaKnown RBP eCLIP17.35■□□□□ 0.37
SMAD9-204ENST00000483941 CDHR2Q9BYE9 1310 aa17.35■□□□□ 0.37
SMAD9-204ENST00000483941 POLRMTO00411 1230 aaKnown RBP17.34■□□□□ 0.37
SMAD9-204ENST00000483941 SRGAP3O43295 1099 aa17.34■□□□□ 0.37
SMAD9-204ENST00000483941 GPTP24298 496 aa17.34■□□□□ 0.37
SMAD9-204ENST00000483941 SSH3Q8TE77 659 aa17.34■□□□□ 0.37
SMAD9-204ENST00000483941 SETDB2Q96T68 719 aa17.34■□□□□ 0.37
SMAD9-204ENST00000483941 DCTPP1Q9H773 170 aa17.34■□□□□ 0.37
SMAD9-204ENST00000483941 SH3TC1Q8TE82 1336 aa17.33■□□□□ 0.36
SMAD9-204ENST00000483941 VEGFAP15692 232 aaPredicted RBP17.33■□□□□ 0.36
SMAD9-204ENST00000483941 USPL1Q5W0Q7 1092 aa17.33■□□□□ 0.36
SMAD9-204ENST00000483941 SIRT2Q8IXJ6 389 aa17.33■□□□□ 0.36
SMAD9-204ENST00000483941 SUCLG2Q96I99 432 aa17.33■□□□□ 0.36
SMAD9-204ENST00000483941 PLA2G12BQ9BX93 195 aa17.33■□□□□ 0.36
SMAD9-204ENST00000483941 DICER1Q9UPY3 1922 aaKnown RBP17.32■□□□□ 0.36
SMAD9-204ENST00000483941 GLTPD2A6NH11 291 aa17.32■□□□□ 0.36
SMAD9-204ENST00000483941 RAB11FIP3O75154 756 aa17.32■□□□□ 0.36
SMAD9-204ENST00000483941 LMNB1P20700 586 aa17.32■□□□□ 0.36
SMAD9-204ENST00000483941 CASP7P55210 303 aa17.32■□□□□ 0.36
SMAD9-204ENST00000483941 RABL6Q3YEC7 729 aaPredicted RBP17.32■□□□□ 0.36
SMAD9-204ENST00000483941 BICC1Q9H694 974 aaKnown RBP17.32■□□□□ 0.36
SMAD9-204ENST00000483941 POLA2Q14181 598 aa17.31■□□□□ 0.36
SMAD9-204ENST00000483941 TPTE2Q6XPS3 522 aa17.31■□□□□ 0.36
SMAD9-204ENST00000483941 GTF2E1P29083 439 aaPredicted RBP17.3■□□□□ 0.36
SMAD9-204ENST00000483941 TM4SF1P30408 202 aa17.3■□□□□ 0.36
SMAD9-204ENST00000483941 ERC1Q8IUD2 1116 aa17.3■□□□□ 0.36
SMAD9-204ENST00000483941 IRS4O14654 1257 aaPredicted RBP17.29■□□□□ 0.36
SMAD9-204ENST00000483941 PDE8AO60658 829 aa17.29■□□□□ 0.36
SMAD9-204ENST00000483941 NUCB1Q02818 461 aa17.29■□□□□ 0.36
SMAD9-204ENST00000483941 FAM89AQ96GI7 184 aa17.29■□□□□ 0.36
SMAD9-204ENST00000483941 UBN2Q6ZU65 1347 aa17.28■□□□□ 0.36
SMAD9-204ENST00000483941 PNMA6EA0A0J9YXQ4 647 aa17.28■□□□□ 0.36
SMAD9-204ENST00000483941 SUSD4Q5VX71 490 aa17.28■□□□□ 0.36
SMAD9-204ENST00000483941 KAZALD1Q96I82 304 aa17.28■□□□□ 0.36
SMAD9-204ENST00000483941 NOP58Q9Y2X3 529 aaKnown RBP17.28■□□□□ 0.36
SMAD9-204ENST00000483941 NUP98P52948 1817 aa17.28■□□□□ 0.36
SMAD9-204ENST00000483941 FER1L6Q2WGJ9 1857 aa17.27■□□□□ 0.36
SMAD9-204ENST00000483941 NPHP1O15259 732 aa17.27■□□□□ 0.36
SMAD9-204ENST00000483941 SURF6O75683 361 aaKnown RBP17.27■□□□□ 0.36
SMAD9-204ENST00000483941 FOXO4P98177 505 aa17.27■□□□□ 0.36
SMAD9-204ENST00000483941 G3BP1Q13283 466 aaKnown RBP eCLIP17.27■□□□□ 0.36
SMAD9-204ENST00000483941 CCDC57Q2TAC2 916 aa17.27■□□□□ 0.36
SMAD9-204ENST00000483941 ANKRD45Q5TZF3 282 aa17.27■□□□□ 0.36
SMAD9-204ENST00000483941 TBC1D9BQ66K14 1250 aa17.27■□□□□ 0.36
SMAD9-204ENST00000483941 LMBR1LQ6UX01 489 aa17.27■□□□□ 0.36
SMAD9-204ENST00000483941 CHD1LQ86WJ1 897 aa17.27■□□□□ 0.36
SMAD9-204ENST00000483941 NBPF5PQ86XG9 351 aaPredicted RBP17.27■□□□□ 0.36
SMAD9-204ENST00000483941 BCL2L12Q9HB09 334 aa17.27■□□□□ 0.36
SMAD9-204ENST00000483941 FBXO3Q9UK99 471 aa17.27■□□□□ 0.36
SMAD9-204ENST00000483941 ANKRD36CQ5JPF3 1778 aa17.27■□□□□ 0.35
SMAD9-204ENST00000483941 COL11A2P13942 1736 aaPredicted RBP17.27■□□□□ 0.35
SMAD9-204ENST00000483941 CARMIL3Q8ND23 1372 aa17.27■□□□□ 0.35
SMAD9-204ENST00000483941 ANKRD31Q8N7Z5 1873 aa17.27■□□□□ 0.35
SMAD9-204ENST00000483941 BCORQ6W2J9 1755 aa17.26■□□□□ 0.35
SMAD9-204ENST00000483941 CSF1RP07333 972 aa17.26■□□□□ 0.35
SMAD9-204ENST00000483941 OS9Q13438 667 aaPredicted RBP17.26■□□□□ 0.35
SMAD9-204ENST00000483941 RTL5Q5HYW3 569 aaPredicted RBP17.26■□□□□ 0.35
SMAD9-204ENST00000483941 TTLL6Q8N841 843 aa17.26■□□□□ 0.35
SMAD9-204ENST00000483941 LRRCC1Q9C099 1032 aa17.26■□□□□ 0.35
SMAD9-204ENST00000483941 COPRSQ9NQ92 184 aa17.26■□□□□ 0.35
SMAD9-204ENST00000483941 PDZRN3Q9UPQ7 1066 aa17.26■□□□□ 0.35
SMAD9-204ENST00000483941 CHMP3Q9Y3E7 222 aa17.26■□□□□ 0.35
SMAD9-204ENST00000483941 SCN7AQ01118 1682 aa17.26■□□□□ 0.35
SMAD9-204ENST00000483941 CACNA1SQ13698 1873 aa17.25■□□□□ 0.35
SMAD9-204ENST00000483941 NTSR2O95665 410 aa17.25■□□□□ 0.35
SMAD9-204ENST00000483941 IFIT5Q13325 482 aaKnown RBP17.25■□□□□ 0.35
SMAD9-204ENST00000483941 NFIXQ14938 502 aa17.25■□□□□ 0.35
SMAD9-204ENST00000483941 CCDC152Q4G0S7 254 aa17.25■□□□□ 0.35
SMAD9-204ENST00000483941 SLC10A5Q5PT55 438 aa17.25■□□□□ 0.35
SMAD9-204ENST00000483941 BICDL1Q6ZP65 573 aa17.25■□□□□ 0.35
SMAD9-204ENST00000483941 KIF1BPQ96EK5 621 aa17.25■□□□□ 0.35
SMAD9-204ENST00000483941 NFKBIEO00221 500 aa17.24■□□□□ 0.35
SMAD9-204ENST00000483941 CTSWP56202 376 aa17.24■□□□□ 0.35
SMAD9-204ENST00000483941 TAF7LQ5H9L4 462 aa17.24■□□□□ 0.35
SMAD9-204ENST00000483941 JARID2Q92833 1246 aaPredicted RBP17.24■□□□□ 0.35
SMAD9-204ENST00000483941 ANKRD18BA2A2Z9 1011 aa17.23■□□□□ 0.35
SMAD9-204ENST00000483941 FAM177BA6PVY3 158 aa17.23■□□□□ 0.35
SMAD9-204ENST00000483941 POTECB2RU33 542 aa17.23■□□□□ 0.35
SMAD9-204ENST00000483941 EPHA10Q5JZY3 1008 aa17.23■□□□□ 0.35
SMAD9-204ENST00000483941 C2CD5Q86YS7 1000 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms