RNA–Protein interactions for RNA: ENST00000483414.1

LIMK1-205, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 3,374 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-205ENST00000483414 NEXNQ0ZGT2 675 aa12.03□□□□□ -0.48
LIMK1-205ENST00000483414 DUOX1Q9NRD9 1551 aa12.03□□□□□ -0.48
LIMK1-205ENST00000483414 CRY2Q49AN0 593 aa12.02□□□□□ -0.48
LIMK1-205ENST00000483414 PRR5LQ6MZQ0 368 aa12.02□□□□□ -0.48
LIMK1-205ENST00000483414 SLC16A10Q8TF71 515 aa12.02□□□□□ -0.48
LIMK1-205ENST00000483414 C1orf115Q9H7X2 142 aa12.02□□□□□ -0.48
LIMK1-205ENST00000483414 LRRFIP2Q9Y608 721 aaKnown RBP12.02□□□□□ -0.48
LIMK1-205ENST00000483414 FAM161AQ3B820 660 aa12.02□□□□□ -0.49
LIMK1-205ENST00000483414 ERFEQ4G0M1 354 aa12.02□□□□□ -0.49
LIMK1-205ENST00000483414 FAM89AQ96GI7 184 aa12.02□□□□□ -0.49
LIMK1-205ENST00000483414 BICC1Q9H694 974 aaKnown RBP12.02□□□□□ -0.49
LIMK1-205ENST00000483414 SLX4Q8IY92 1834 aa12.02□□□□□ -0.49
LIMK1-205ENST00000483414 PNMA6EA0A0J9YXQ4 647 aa12.02□□□□□ -0.49
LIMK1-205ENST00000483414 HDAC1Q13547 482 aaPredicted RBP12.02□□□□□ -0.49
LIMK1-205ENST00000483414 UBE3BQ7Z3V4 1068 aa12.02□□□□□ -0.49
LIMK1-205ENST00000483414 JARID2Q92833 1246 aaPredicted RBP12.02□□□□□ -0.49
LIMK1-205ENST00000483414 NLGN1Q8N2Q7 840 aa12.01□□□□□ -0.49
LIMK1-205ENST00000483414 UTP14AQ9BVJ6 771 aaKnown RBP12.01□□□□□ -0.49
LIMK1-205ENST00000483414 IGHDP01880 384 aa12.01□□□□□ -0.49
LIMK1-205ENST00000483414 GNAI3P08754 354 aa12.01□□□□□ -0.49
LIMK1-205ENST00000483414 SSH3Q8TE77 659 aa12.01□□□□□ -0.49
LIMK1-205ENST00000483414 SOCS7O14512 581 aa12.01□□□□□ -0.49
LIMK1-205ENST00000483414 R3HDM1Q15032 1099 aaKnown RBP12.01□□□□□ -0.49
LIMK1-205ENST00000483414 NUTM1Q86Y26 1132 aa12□□□□□ -0.49
LIMK1-205ENST00000483414 SH3TC1Q8TE82 1336 aa12□□□□□ -0.49
LIMK1-205ENST00000483414 FER1L6Q2WGJ9 1857 aa12□□□□□ -0.49
LIMK1-205ENST00000483414 GNAI2P04899 355 aa12□□□□□ -0.49
LIMK1-205ENST00000483414 TTLL11Q8NHH1 800 aa12□□□□□ -0.49
LIMK1-205ENST00000483414 SETDB2Q96T68 719 aa12□□□□□ -0.49
LIMK1-205ENST00000483414 ATP8B2P98198 1209 aa11.99□□□□□ -0.49
LIMK1-205ENST00000483414 SF3B3Q15393 1217 aaKnown RBP11.99□□□□□ -0.49
LIMK1-205ENST00000483414 SERPINB2P05120 415 aa11.99□□□□□ -0.49
LIMK1-205ENST00000483414 UBTFL1P0CB47 393 aaPredicted RBP11.99□□□□□ -0.49
LIMK1-205ENST00000483414 MMP10P09238 476 aa11.99□□□□□ -0.49
LIMK1-205ENST00000483414 CTSWP56202 376 aa11.99□□□□□ -0.49
LIMK1-205ENST00000483414 PPP1R42Q7Z4L9 355 aa11.99□□□□□ -0.49
LIMK1-205ENST00000483414 SPRYD3Q8NCJ5 442 aa11.99□□□□□ -0.49
LIMK1-205ENST00000483414 MTFR1LQ9H019 292 aa11.99□□□□□ -0.49
LIMK1-205ENST00000483414 IRS4O14654 1257 aaPredicted RBP11.98□□□□□ -0.49
LIMK1-205ENST00000483414 MSL1Q68DK7 614 aa11.98□□□□□ -0.49
LIMK1-205ENST00000483414 TRMT112Q9UI30 125 aaKnown RBP11.98□□□□□ -0.49
LIMK1-205ENST00000483414 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.98□□□□□ -0.49
LIMK1-205ENST00000483414 NYXQ9GZU5 481 aa11.98□□□□□ -0.49
LIMK1-205ENST00000483414 PDE8AO60658 829 aa11.98□□□□□ -0.49
LIMK1-205ENST00000483414 RPAP2Q8IXW5 612 aaPredicted RBP11.98□□□□□ -0.49
LIMK1-205ENST00000483414 UBE2Q2Q8WVN8 375 aa11.97□□□□□ -0.49
LIMK1-205ENST00000483414 SLKQ9H2G2 1235 aaPredicted RBP11.97□□□□□ -0.49
LIMK1-205ENST00000483414 C9orf78Q9NZ63 289 aaPredicted RBP11.97□□□□□ -0.49
LIMK1-205ENST00000483414 PSME4Q14997 1843 aa11.97□□□□□ -0.49
LIMK1-205ENST00000483414 PTPN12Q05209 780 aaKnown RBP11.97□□□□□ -0.49
LIMK1-205ENST00000483414 BICDL1Q6ZP65 573 aa11.97□□□□□ -0.49
LIMK1-205ENST00000483414 AKAP11Q9UKA4 1901 aa11.97□□□□□ -0.49
LIMK1-205ENST00000483414 HCLS1P14317 486 aaPredicted RBP11.96□□□□□ -0.49
LIMK1-205ENST00000483414 NFKBIBQ15653 356 aa11.96□□□□□ -0.49
LIMK1-205ENST00000483414 KCNA3P22001 575 aa11.96□□□□□ -0.49
LIMK1-205ENST00000483414 SMC5Q8IY18 1101 aa11.96□□□□□ -0.49
LIMK1-205ENST00000483414 GREM2Q9H772 168 aa11.96□□□□□ -0.49
LIMK1-205ENST00000483414 PSDA5PKW4 1024 aaPredicted RBP11.96□□□□□ -0.5
LIMK1-205ENST00000483414 HOXA10P31260 410 aaPredicted RBP11.96□□□□□ -0.5
LIMK1-205ENST00000483414 SLC51AQ86UW1 340 aa11.96□□□□□ -0.5
LIMK1-205ENST00000483414 NBPF5PQ86XG9 351 aaPredicted RBP11.96□□□□□ -0.5
LIMK1-205ENST00000483414 CHMP4BQ9H444 224 aaKnown RBP11.96□□□□□ -0.5
LIMK1-205ENST00000483414 TPTE2Q6XPS3 522 aa11.95□□□□□ -0.5
LIMK1-205ENST00000483414 ATG9AQ7Z3C6 839 aa11.95□□□□□ -0.5
LIMK1-205ENST00000483414 CNBD1Q8NA66 436 aa11.95□□□□□ -0.5
LIMK1-205ENST00000483414 DCTPP1Q9H773 170 aa11.95□□□□□ -0.5
LIMK1-205ENST00000483414 COPRSQ9NQ92 184 aa11.95□□□□□ -0.5
LIMK1-205ENST00000483414 IRS2Q9Y4H2 1338 aa11.95□□□□□ -0.5
LIMK1-205ENST00000483414 GSE1Q14687 1217 aa11.95□□□□□ -0.5
LIMK1-205ENST00000483414 VGLL2Q8N8G2 317 aa11.95□□□□□ -0.5
LIMK1-205ENST00000483414 DOCK2Q92608 1830 aa11.95□□□□□ -0.5
LIMK1-205ENST00000483414 LMBR1LQ6UX01 489 aa11.95□□□□□ -0.5
LIMK1-205ENST00000483414 BRIP1Q9BX63 1249 aa11.95□□□□□ -0.5
LIMK1-205ENST00000483414 SALL3Q9BXA9 1300 aa11.94□□□□□ -0.5
LIMK1-205ENST00000483414 FRAT2O75474 233 aaPredicted RBP11.94□□□□□ -0.5
LIMK1-205ENST00000483414 ZBTB7AO95365 584 aa11.94□□□□□ -0.5
LIMK1-205ENST00000483414 UPF2Q9HAU5 1272 aaKnown RBP11.94□□□□□ -0.5
LIMK1-205ENST00000483414 MYH13Q9UKX3 1938 aa11.94□□□□□ -0.5
LIMK1-205ENST00000483414 CCDC24Q8N4L8 307 aa11.94□□□□□ -0.5
LIMK1-205ENST00000483414 SRGNP10124 158 aa11.93□□□□□ -0.5
LIMK1-205ENST00000483414 C8orf34Q49A92 452 aa11.93□□□□□ -0.5
LIMK1-205ENST00000483414 KLHDC4Q8TBB5 520 aa11.93□□□□□ -0.5
LIMK1-205ENST00000483414 SEC31BQ9NQW1 1179 aa11.93□□□□□ -0.5
LIMK1-205ENST00000483414 RIPOR2Q9Y4F9 1068 aa11.92□□□□□ -0.5
LIMK1-205ENST00000483414 SBF1O95248 1867 aa11.92□□□□□ -0.5
LIMK1-205ENST00000483414 ZNF609O15014 1411 aa11.92□□□□□ -0.5
LIMK1-205ENST00000483414 FAM177BA6PVY3 158 aa11.92□□□□□ -0.5
LIMK1-205ENST00000483414 SRGAP3O43295 1099 aa11.92□□□□□ -0.5
LIMK1-205ENST00000483414 PARP3Q9Y6F1 533 aa11.92□□□□□ -0.5
LIMK1-205ENST00000483414 DICER1Q9UPY3 1922 aaKnown RBP11.92□□□□□ -0.5
LIMK1-205ENST00000483414 CHD4Q14839 1912 aa11.92□□□□□ -0.5
LIMK1-205ENST00000483414 CIAO1O76071 339 aa11.92□□□□□ -0.5
LIMK1-205ENST00000483414 SASH1O94885 1247 aa11.92□□□□□ -0.5
LIMK1-205ENST00000483414 ITGA6P23229 1130 aa11.92□□□□□ -0.5
LIMK1-205ENST00000483414 PA2G4Q9UQ80 394 aaKnown RBP11.92□□□□□ -0.5
LIMK1-205ENST00000483414 MYO5AQ9Y4I1 1855 aaKnown RBP11.91□□□□□ -0.5
LIMK1-205ENST00000483414 C7orf43Q8WVR3 580 aa11.91□□□□□ -0.5
LIMK1-205ENST00000483414 CELF1Q92879 486 aaKnown RBP11.91□□□□□ -0.5
LIMK1-205ENST00000483414 COL4A5P29400 1685 aa11.91□□□□□ -0.5
LIMK1-205ENST00000483414 ST5P78524 1137 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms