RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 TSC1Q92574 1164 aa8.36□□□□□ -1.07
SF3B1-209ENST00000479532 MARF1Q9Y4F3 1742 aaKnown RBP8.36□□□□□ -1.07
SF3B1-209ENST00000479532 USP31Q70CQ4 1352 aa8.35□□□□□ -1.07
SF3B1-209ENST00000479532 ABL2P42684 1182 aa8.35□□□□□ -1.07
SF3B1-209ENST00000479532 CTDSPL2Q05D32 466 aa8.35□□□□□ -1.07
SF3B1-209ENST00000479532 DDX10Q13206 875 aaKnown RBP8.35□□□□□ -1.07
SF3B1-209ENST00000479532 NME9Q86XW9 330 aa8.35□□□□□ -1.07
SF3B1-209ENST00000479532 MPNDQ8N594 471 aa8.35□□□□□ -1.07
SF3B1-209ENST00000479532 CARD14Q9BXL6 1004 aa8.35□□□□□ -1.07
SF3B1-209ENST00000479532 TBC1D2BQ9UPU7 963 aa8.35□□□□□ -1.07
SF3B1-209ENST00000479532 CRYBG1Q9Y4K1 1723 aa8.34□□□□□ -1.07
SF3B1-209ENST00000479532 SLIT3O75094 1523 aa8.34□□□□□ -1.07
SF3B1-209ENST00000479532 USP19O94966 1318 aa8.34□□□□□ -1.07
SF3B1-209ENST00000479532 CFAP99D6REC4 459 aa8.34□□□□□ -1.07
SF3B1-209ENST00000479532 ZIC2O95409 532 aaPredicted RBP8.34□□□□□ -1.07
SF3B1-209ENST00000479532 HELBQ8NG08 1087 aaPredicted RBP8.34□□□□□ -1.07
SF3B1-209ENST00000479532 SYMPKQ92797 1274 aaKnown RBP8.34□□□□□ -1.07
SF3B1-209ENST00000479532 PRM3Q9NNZ6 103 aa8.34□□□□□ -1.07
SF3B1-209ENST00000479532 ZNF330Q9Y3S2 320 aaPredicted RBP8.34□□□□□ -1.07
SF3B1-209ENST00000479532 OVOS2A0A0J9YW53 1432 aa8.34□□□□□ -1.07
SF3B1-209ENST00000479532 OVOS2Q6IE36 1432 aa8.34□□□□□ -1.07
SF3B1-209ENST00000479532 FYB1O15117 783 aa8.33□□□□□ -1.08
SF3B1-209ENST00000479532 ARHGEF15O94989 841 aa8.33□□□□□ -1.08
SF3B1-209ENST00000479532 GCP02774 474 aa8.33□□□□□ -1.08
SF3B1-209ENST00000479532 CCNYL3P0C7X3 344 aa8.33□□□□□ -1.08
SF3B1-209ENST00000479532 MORC1Q86VD1 984 aa8.33□□□□□ -1.08
SF3B1-209ENST00000479532 WHAMMQ8TF30 809 aa8.33□□□□□ -1.08
SF3B1-209ENST00000479532 GJD4Q96KN9 370 aaPredicted RBP8.33□□□□□ -1.08
SF3B1-209ENST00000479532 KLF16Q9BXK1 252 aaPredicted RBP8.33□□□□□ -1.08
SF3B1-209ENST00000479532 GGNBP2Q9H3C7 697 aa8.33□□□□□ -1.08
SF3B1-209ENST00000479532 HMX1Q9NP08 348 aaPredicted RBP8.33□□□□□ -1.08
SF3B1-209ENST00000479532 NPC1L1Q9UHC9 1359 aa8.33□□□□□ -1.08
SF3B1-209ENST00000479532 ZBTB7CA1YPR0 619 aa8.32□□□□□ -1.08
SF3B1-209ENST00000479532 ADAMTS2O95450 1211 aa8.32□□□□□ -1.08
SF3B1-209ENST00000479532 ARID5BQ14865 1188 aa8.32□□□□□ -1.08
SF3B1-209ENST00000479532 WWC1Q8IX03 1113 aa8.32□□□□□ -1.08
SF3B1-209ENST00000479532 UNC93B1Q9H1C4 597 aa8.32□□□□□ -1.08
SF3B1-209ENST00000479532 ZFAND3Q9H8U3 227 aa8.32□□□□□ -1.08
SF3B1-209ENST00000479532 LTN1O94822 1766 aa8.32□□□□□ -1.08
SF3B1-209ENST00000479532 COL14A1Q05707 1796 aaKnown RBP8.32□□□□□ -1.08
SF3B1-209ENST00000479532 PER1O15534 1290 aaPredicted RBP8.31□□□□□ -1.08
SF3B1-209ENST00000479532 ZC3H6P61129 1189 aaKnown RBP8.31□□□□□ -1.08
SF3B1-209ENST00000479532 CC2D1BQ5T0F9 858 aaKnown RBP8.31□□□□□ -1.08
SF3B1-209ENST00000479532 RETREG3Q86VR2 466 aa8.31□□□□□ -1.08
SF3B1-209ENST00000479532 PRR7Q8TB68 274 aa8.31□□□□□ -1.08
SF3B1-209ENST00000479532 LRRN4Q8WUT4 740 aa8.31□□□□□ -1.08
SF3B1-209ENST00000479532 NGLY1Q96IV0 654 aa8.31□□□□□ -1.08
SF3B1-209ENST00000479532 C8orf37Q96NL8 207 aa8.31□□□□□ -1.08
SF3B1-209ENST00000479532 ANP32EQ9BTT0 268 aa8.31□□□□□ -1.08
SF3B1-209ENST00000479532 PRDM11Q9NQV5 511 aa8.31□□□□□ -1.08
SF3B1-209ENST00000479532 NDUFB9Q9Y6M9 179 aa8.31□□□□□ -1.08
SF3B1-209ENST00000479532 NFAT5O94916 1531 aa8.3□□□□□ -1.08
SF3B1-209ENST00000479532 ABCC6O95255 1503 aa8.3□□□□□ -1.08
SF3B1-209ENST00000479532 LRP6O75581 1613 aa8.3□□□□□ -1.08
SF3B1-209ENST00000479532 NWD2Q9ULI1 1742 aa8.3□□□□□ -1.08
SF3B1-209ENST00000479532 CNGB1Q14028 1251 aaPredicted RBP8.3□□□□□ -1.08
SF3B1-209ENST00000479532 ZNF511Q8NB15 262 aa8.3□□□□□ -1.08
SF3B1-209ENST00000479532 GALNT6Q8NCL4 622 aa8.3□□□□□ -1.08
SF3B1-209ENST00000479532 FAM174AQ8TBP5 190 aa8.3□□□□□ -1.08
SF3B1-209ENST00000479532 CCDC97Q96F63 343 aaPredicted RBP8.3□□□□□ -1.08
SF3B1-209ENST00000479532 DNMT3LQ9UJW3 386 aa8.3□□□□□ -1.08
SF3B1-209ENST00000479532 MAP2P11137 1827 aaKnown RBP8.3□□□□□ -1.08
SF3B1-209ENST00000479532 CPDO75976 1380 aa8.3□□□□□ -1.08
SF3B1-209ENST00000479532 KIAA0232Q92628 1395 aa8.3□□□□□ -1.08
SF3B1-209ENST00000479532 PLCH1Q4KWH8 1693 aa8.3□□□□□ -1.08
SF3B1-209ENST00000479532 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.29□□□□□ -1.08
SF3B1-209ENST00000479532 SLURP2P0DP57 97 aa8.29□□□□□ -1.08
SF3B1-209ENST00000479532 TNNT2P45379 298 aaPredicted RBP8.29□□□□□ -1.08
SF3B1-209ENST00000479532 AMPHP49418 695 aa8.29□□□□□ -1.08
SF3B1-209ENST00000479532 MAP3K10Q02779 954 aa8.29□□□□□ -1.08
SF3B1-209ENST00000479532 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.29□□□□□ -1.082e-6■■□□□ 12.9
SF3B1-209ENST00000479532 RNFT1Q5M7Z0 435 aa8.29□□□□□ -1.08
SF3B1-209ENST00000479532 LINC00528Q8N1L1 170 aa8.29□□□□□ -1.08
SF3B1-209ENST00000479532 ITPKCQ96DU7 683 aa8.29□□□□□ -1.08
SF3B1-209ENST00000479532 SPOCK3Q9BQ16 436 aa8.29□□□□□ -1.08
SF3B1-209ENST00000479532 TRIM34Q9BYJ4 488 aa8.29□□□□□ -1.08
SF3B1-209ENST00000479532 RTL1A6NKG5 1358 aa8.29□□□□□ -1.08
SF3B1-209ENST00000479532 KIF24Q5T7B8 1368 aa8.29□□□□□ -1.08
SF3B1-209ENST00000479532 AATKQ6ZMQ8 1374 aa8.29□□□□□ -1.08
SF3B1-209ENST00000479532 SMG6Q86US8 1419 aaKnown RBP8.29□□□□□ -1.08
SF3B1-209ENST00000479532 EVA1CP58658 441 aa8.28□□□□□ -1.08
SF3B1-209ENST00000479532 PLA2G4EQ3MJ16 856 aa8.28□□□□□ -1.08
SF3B1-209ENST00000479532 ZNF772Q68DY9 489 aaPredicted RBP8.28□□□□□ -1.08
SF3B1-209ENST00000479532 ARHGEF25Q86VW2 580 aa8.28□□□□□ -1.08
SF3B1-209ENST00000479532 KRTAP9-2Q9BYQ4 174 aa8.28□□□□□ -1.08
SF3B1-209ENST00000479532 EVA1BQ9NVM1 165 aa8.28□□□□□ -1.08
SF3B1-209ENST00000479532 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.28□□□□□ -1.08
SF3B1-209ENST00000479532 BLMP54132 1417 aaPredicted RBP8.28□□□□□ -1.08
SF3B1-209ENST00000479532 FLT4P35916 1363 aa8.27□□□□□ -1.09
SF3B1-209ENST00000479532 POM121CA8CG34 1229 aa8.27□□□□□ -1.09
SF3B1-209ENST00000479532 PPM1GO15355 546 aaPredicted RBP8.27□□□□□ -1.09
SF3B1-209ENST00000479532 ANP32CO43423 234 aa8.27□□□□□ -1.09
SF3B1-209ENST00000479532 PTSQ03393 145 aa8.27□□□□□ -1.09
SF3B1-209ENST00000479532 RRS1Q15050 365 aaKnown RBP8.27□□□□□ -1.09
SF3B1-209ENST00000479532 RALBP1Q15311 655 aa8.27□□□□□ -1.09
SF3B1-209ENST00000479532 CHRNA2Q15822 529 aa8.27□□□□□ -1.09
SF3B1-209ENST00000479532 NANOS1Q8WY41 292 aaKnown RBP8.27□□□□□ -1.09
SF3B1-209ENST00000479532 BTG4Q9NY30 223 aa8.27□□□□□ -1.09
SF3B1-209ENST00000479532 SERPINA10Q9UK55 444 aa8.27□□□□□ -1.09
SF3B1-209ENST00000479532 USP21Q9UK80 565 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms