RNA–Protein interactions for RNA: ENST00000478913.1

CCDC171-207, Transcript of coiled-coil domain containing 171, humanhuman

TSL 3

Gene CCDC171, Length 764 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-207ENST00000478913 AQRO60306 1485 aaKnown RBP eCLIP8.83□□□□□ -1
CCDC171-207ENST00000478913 CLASP1Q7Z460 1538 aa8.82□□□□□ -1
CCDC171-207ENST00000478913 NDUFB5O43674 189 aa8.82□□□□□ -1
CCDC171-207ENST00000478913 PCSK2P16519 638 aa8.82□□□□□ -1
CCDC171-207ENST00000478913 MZF1P28698 734 aaPredicted RBP8.82□□□□□ -1
CCDC171-207ENST00000478913 KCNQ4P56696 695 aa8.82□□□□□ -1
CCDC171-207ENST00000478913 BRPF3Q9ULD4 1205 aa8.82□□□□□ -1
CCDC171-207ENST00000478913 IFT140Q96RY7 1462 aa8.82□□□□□ -1
CCDC171-207ENST00000478913 FZD6O60353 706 aa8.81□□□□□ -1
CCDC171-207ENST00000478913 MX2P20592 715 aa8.81□□□□□ -1
CCDC171-207ENST00000478913 TTC16Q8NEE8 873 aa8.81□□□□□ -1
CCDC171-207ENST00000478913 NUDT16Q96DE0 195 aaKnown RBP8.81□□□□□ -1
CCDC171-207ENST00000478913 CCDC87Q9NVE4 849 aa8.81□□□□□ -1
CCDC171-207ENST00000478913 POLIQ9UNA4 740 aa8.81□□□□□ -1
CCDC171-207ENST00000478913 MED1Q15648 1581 aaPredicted RBP8.81□□□□□ -1
CCDC171-207ENST00000478913 PDGFAP04085 211 aa8.8□□□□□ -1
CCDC171-207ENST00000478913 GRNP28799 593 aaKnown RBP8.8□□□□□ -1
CCDC171-207ENST00000478913 GAS6Q14393 721 aa8.8□□□□□ -1
CCDC171-207ENST00000478913 FAM182BQ5T319 152 aa8.8□□□□□ -1
CCDC171-207ENST00000478913 TMCO4Q5TGY1 634 aa8.8□□□□□ -1
CCDC171-207ENST00000478913 COL25A1Q9BXS0 654 aaPredicted RBP8.8□□□□□ -1
CCDC171-207ENST00000478913 DCTN4Q9UJW0 460 aa8.8□□□□□ -1
CCDC171-207ENST00000478913 HCN2Q9UL51 889 aa8.8□□□□□ -1
CCDC171-207ENST00000478913 ADAMTS8Q9UP79 889 aa8.8□□□□□ -1
CCDC171-207ENST00000478913 RPLP1P05386 114 aaKnown RBP8.79□□□□□ -1
CCDC171-207ENST00000478913 BMP4P12644 408 aa8.79□□□□□ -1
CCDC171-207ENST00000478913 MAPK1P28482 360 aa8.79□□□□□ -1
CCDC171-207ENST00000478913 USP5P45974 858 aa8.79□□□□□ -1
CCDC171-207ENST00000478913 MBIPQ9NS73 344 aa8.79□□□□□ -1
CCDC171-207ENST00000478913 NSFL1CQ9UNZ2 370 aaKnown RBP8.79□□□□□ -1
CCDC171-207ENST00000478913 FNDC3AQ9Y2H6 1198 aaKnown RBP8.79□□□□□ -1
CCDC171-207ENST00000478913 KCNMB2Q9Y691 235 aa8.79□□□□□ -1
CCDC171-207ENST00000478913 TOP2BQ02880 1626 aa8.79□□□□□ -1
CCDC171-207ENST00000478913 UBAP1LF5GYI3 381 aa8.78□□□□□ -1
CCDC171-207ENST00000478913 XYLBO75191 536 aa8.78□□□□□ -1
CCDC171-207ENST00000478913 MARSP56192 900 aaKnown RBP8.78□□□□□ -1
CCDC171-207ENST00000478913 CTBSQ01459 385 aa8.78□□□□□ -1
CCDC171-207ENST00000478913 SPEM2Q0P670 501 aa8.78□□□□□ -1
CCDC171-207ENST00000478913 GRIN2CQ14957 1233 aa8.78□□□□□ -1
CCDC171-207ENST00000478913 CCDC27Q2M243 656 aa8.78□□□□□ -1
CCDC171-207ENST00000478913 C8orf34Q49A92 452 aa8.78□□□□□ -1
CCDC171-207ENST00000478913 GPAT2Q6NUI2 795 aa8.78□□□□□ -1
CCDC171-207ENST00000478913 PNMA5Q96PV4 448 aa8.78□□□□□ -1
CCDC171-207ENST00000478913 C11orf16Q9NQ32 467 aa8.78□□□□□ -1
CCDC171-207ENST00000478913 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.77□□□□□ -1.01
CCDC171-207ENST00000478913 NEUROD1Q13562 356 aa8.77□□□□□ -1.01
CCDC171-207ENST00000478913 CCINQ13939 588 aa8.77□□□□□ -1.01
CCDC171-207ENST00000478913 TRIP4Q15650 581 aaPredicted RBP8.77□□□□□ -1.01
CCDC171-207ENST00000478913 RNFT1Q5M7Z0 435 aa8.77□□□□□ -1.01
CCDC171-207ENST00000478913 TMC1Q8TDI8 760 aa8.77□□□□□ -1.01
CCDC171-207ENST00000478913 PRR12Q9ULL5 1215 aa8.77□□□□□ -1.01
CCDC171-207ENST00000478913 PCF11O94913 1555 aaKnown RBP8.77□□□□□ -1.01
CCDC171-207ENST00000478913 MAP2K3P46734 347 aa8.76□□□□□ -1.01
CCDC171-207ENST00000478913 CITED4Q96RK1 184 aa8.76□□□□□ -1.01
CCDC171-207ENST00000478913 SLC30A3Q99726 388 aa8.76□□□□□ -1.01
CCDC171-207ENST00000478913 GSX2Q9BZM3 304 aa8.76□□□□□ -1.01
CCDC171-207ENST00000478913 TSPOAP1O95153 1857 aa8.76□□□□□ -1.01
CCDC171-207ENST00000478913 EGFRP00533 1210 aa8.75□□□□□ -1.01
CCDC171-207ENST00000478913 EHHADHQ08426 723 aa8.75□□□□□ -1.01
CCDC171-207ENST00000478913 PDE3BQ13370 1112 aa8.75□□□□□ -1.01
CCDC171-207ENST00000478913 KRT25Q7Z3Z0 450 aa8.75□□□□□ -1.01
CCDC171-207ENST00000478913 RAB44Q7Z6P3 723 aaPredicted RBP8.75□□□□□ -1.01
CCDC171-207ENST00000478913 GJD3Q8N144 294 aa8.75□□□□□ -1.01
CCDC171-207ENST00000478913 BHMTQ93088 406 aa8.75□□□□□ -1.01
CCDC171-207ENST00000478913 CNTNAP3BQ96NU0 1288 aa8.75□□□□□ -1.01
CCDC171-207ENST00000478913 RBCK1Q9BYM8 510 aa8.75□□□□□ -1.01
CCDC171-207ENST00000478913 CNTNAP3Q9BZ76 1288 aa8.75□□□□□ -1.01
CCDC171-207ENST00000478913 EFCC1Q9HA90 598 aa8.75□□□□□ -1.01
CCDC171-207ENST00000478913 IGF1RP08069 1367 aa8.74□□□□□ -1.01
CCDC171-207ENST00000478913 EIF4G3O43432 1585 aaKnown RBP8.74□□□□□ -1.01
CCDC171-207ENST00000478913 A6NHS1 94 aa8.74□□□□□ -1.01
CCDC171-207ENST00000478913 C2CD2LO14523 706 aa8.74□□□□□ -1.01
CCDC171-207ENST00000478913 NFKB1P19838 968 aa8.74□□□□□ -1.01
CCDC171-207ENST00000478913 ZNF438Q7Z4V0 828 aa8.74□□□□□ -1.01
CCDC171-207ENST00000478913 GGNBP2Q9H3C7 697 aa8.74□□□□□ -1.01
CCDC171-207ENST00000478913 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.74□□□□□ -1.01
CCDC171-207ENST00000478913 SNAPC4Q5SXM2 1469 aa8.74□□□□□ -1.01
CCDC171-207ENST00000478913 SASH3O75995 380 aa8.73□□□□□ -1.01
CCDC171-207ENST00000478913 ZNF468Q5VIY5 522 aaPredicted RBP8.73□□□□□ -1.01
CCDC171-207ENST00000478913 PDE12Q6L8Q7 609 aaKnown RBP8.73□□□□□ -1.01
CCDC171-207ENST00000478913 ZSCAN29Q8IWY8 852 aaPredicted RBP8.73□□□□□ -1.01
CCDC171-207ENST00000478913 KRTAP9-2Q9BYQ4 174 aa8.73□□□□□ -1.01
CCDC171-207ENST00000478913 RARAP10276 462 aa8.72□□□□□ -1.01
CCDC171-207ENST00000478913 TARSP26639 723 aaKnown RBP8.72□□□□□ -1.01
CCDC171-207ENST00000478913 HSPA1LP34931 641 aa8.72□□□□□ -1.01
CCDC171-207ENST00000478913 SRSF11Q05519 484 aaKnown RBP8.72□□□□□ -1.01
CCDC171-207ENST00000478913 SYT9Q86SS6 491 aa8.72□□□□□ -1.01
CCDC171-207ENST00000478913 NLRP13Q86W25 1043 aa8.72□□□□□ -1.01
CCDC171-207ENST00000478913 FAM129BQ96TA1 746 aa8.72□□□□□ -1.01
CCDC171-207ENST00000478913 AVENQ9NQS1 362 aaPredicted RBP8.72□□□□□ -1.01
CCDC171-207ENST00000478913 PTPRMP28827 1452 aa8.71□□□□□ -1.01
CCDC171-207ENST00000478913 ARAFP10398 606 aa8.71□□□□□ -1.02
CCDC171-207ENST00000478913 PCBP4P57723 403 aaKnown RBP8.71□□□□□ -1.02
CCDC171-207ENST00000478913 ZNF385CQ66K41 422 aaPredicted RBP8.71□□□□□ -1.02
CCDC171-207ENST00000478913 TMC7Q7Z402 723 aa8.71□□□□□ -1.02
CCDC171-207ENST00000478913 DMRTB1Q96MA1 342 aa8.71□□□□□ -1.02
CCDC171-207ENST00000478913 ASB16Q96NS5 453 aa8.71□□□□□ -1.02
CCDC171-207ENST00000478913 ELP3Q9H9T3 547 aa8.71□□□□□ -1.02
CCDC171-207ENST00000478913 PODXL2Q9NZ53 605 aa8.71□□□□□ -1.02
CCDC171-207ENST00000478913 COL17A1Q9UMD9 1497 aaPredicted RBP8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms