RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 SF3B2Q13435 895 aaKnown RBP8.56□□□□□ -1.04
VPS50-214ENST00000477935 TRIP4Q15650 581 aaPredicted RBP8.56□□□□□ -1.04
VPS50-214ENST00000477935 CHSY3Q70JA7 882 aa8.56□□□□□ -1.04
VPS50-214ENST00000477935 GPR152Q8TDT2 470 aa8.56□□□□□ -1.04
VPS50-214ENST00000477935 PIK3R5Q8WYR1 880 aa8.56□□□□□ -1.04
VPS50-214ENST00000477935 BTBD6Q96KE9 485 aa8.56□□□□□ -1.04
VPS50-214ENST00000477935 ANO2Q9NQ90 1003 aa8.56□□□□□ -1.04
VPS50-214ENST00000477935 ZFATQ9P243 1243 aa8.56□□□□□ -1.04
VPS50-214ENST00000477935 HMGXB3Q12766 1538 aa8.55□□□□□ -1.04
VPS50-214ENST00000477935 NPR3P17342 541 aa8.55□□□□□ -1.04
VPS50-214ENST00000477935 EIF1AXP47813 144 aaKnown RBP8.55□□□□□ -1.04
VPS50-214ENST00000477935 SERPINB4P48594 390 aa8.55□□□□□ -1.04
VPS50-214ENST00000477935 NOM1Q5C9Z4 860 aaKnown RBP8.55□□□□□ -1.04
VPS50-214ENST00000477935 SMARCA2P51531 1590 aa8.55□□□□□ -1.04
VPS50-214ENST00000477935 RARAP10276 462 aa8.54□□□□□ -1.04
VPS50-214ENST00000477935 HOXB4P17483 251 aaPredicted RBP8.54□□□□□ -1.04
VPS50-214ENST00000477935 ALAS2P22557 587 aa8.54□□□□□ -1.04
VPS50-214ENST00000477935 ADH7P40394 386 aa8.54□□□□□ -1.04
VPS50-214ENST00000477935 SNRPNP63162 240 aaKnown RBP8.54□□□□□ -1.04
VPS50-214ENST00000477935 FKBP4Q02790 459 aaKnown RBP eCLIP8.54□□□□□ -1.04
VPS50-214ENST00000477935 TXNDC2Q86VQ3 553 aa8.54□□□□□ -1.04
VPS50-214ENST00000477935 UBE2OQ9C0C9 1292 aaKnown RBP8.54□□□□□ -1.04
VPS50-214ENST00000477935 IGFLR1Q9H665 355 aa8.54□□□□□ -1.04
VPS50-214ENST00000477935 RRAGCQ9HB90 399 aa8.54□□□□□ -1.04
VPS50-214ENST00000477935 EGFL7Q9UHF1 273 aa8.54□□□□□ -1.04
VPS50-214ENST00000477935 FAM13AO94988 1023 aa8.53□□□□□ -1.04
VPS50-214ENST00000477935 MAP3K6O95382 1288 aa8.53□□□□□ -1.04
VPS50-214ENST00000477935 BRD1O95696 1058 aa8.53□□□□□ -1.04
VPS50-214ENST00000477935 TBC1D8BQ0IIM8 1120 aa8.53□□□□□ -1.04
VPS50-214ENST00000477935 SCARF2Q96GP6 870 aaPredicted RBP8.53□□□□□ -1.04
VPS50-214ENST00000477935 CNTNAP5Q8WYK1 1306 aa8.53□□□□□ -1.04
VPS50-214ENST00000477935 BAZ1AQ9NRL2 1556 aaPredicted RBP8.52□□□□□ -1.04
VPS50-214ENST00000477935 UBAP1LF5GYI3 381 aa8.52□□□□□ -1.05
VPS50-214ENST00000477935 DGKGP49619 791 aa8.52□□□□□ -1.05
VPS50-214ENST00000477935 CYB5RLQ6IPT4 315 aa8.52□□□□□ -1.05
VPS50-214ENST00000477935 ALKBH2Q6NS38 261 aa8.52□□□□□ -1.05
VPS50-214ENST00000477935 DHX32Q7L7V1 743 aaKnown RBP8.52□□□□□ -1.05
VPS50-214ENST00000477935 PODNQ7Z5L7 613 aa8.52□□□□□ -1.05
VPS50-214ENST00000477935 NUDT16Q96DE0 195 aaKnown RBP8.52□□□□□ -1.05
VPS50-214ENST00000477935 DNAJB12Q9NXW2 375 aaKnown RBP8.52□□□□□ -1.05
VPS50-214ENST00000477935 FNDC3AQ9Y2H6 1198 aaKnown RBP8.52□□□□□ -1.05
VPS50-214ENST00000477935 H3BRB1 525 aa8.51□□□□□ -1.05
VPS50-214ENST00000477935 RNF225M0QZC1 329 aaPredicted RBP8.51□□□□□ -1.05
VPS50-214ENST00000477935 ICMTO60725 284 aa8.51□□□□□ -1.05
VPS50-214ENST00000477935 DNM1Q05193 864 aaKnown RBP8.51□□□□□ -1.05
VPS50-214ENST00000477935 EDEM1Q92611 657 aa8.51□□□□□ -1.05
VPS50-214ENST00000477935 TUT1Q9H6E5 874 aaKnown RBP8.51□□□□□ -1.05
VPS50-214ENST00000477935 SLC6A14Q9UN76 642 aa8.51□□□□□ -1.05
VPS50-214ENST00000477935 AAMPQ13685 434 aa8.5□□□□□ -1.05
VPS50-214ENST00000477935 NLRP13Q86W25 1043 aa8.5□□□□□ -1.05
VPS50-214ENST00000477935 GLYCTKQ8IVS8 523 aa8.5□□□□□ -1.05
VPS50-214ENST00000477935 BEND7Q8N7W2 519 aaPredicted RBP8.5□□□□□ -1.05
VPS50-214ENST00000477935 CCER1Q8TC90 406 aaPredicted RBP8.5□□□□□ -1.05
VPS50-214ENST00000477935 MKL2Q9ULH7 1088 aa8.5□□□□□ -1.05
VPS50-214ENST00000477935 STARD13Q9Y3M8 1113 aa8.5□□□□□ -1.05
VPS50-214ENST00000477935 MRC2Q9UBG0 1479 aa8.5□□□□□ -1.05
VPS50-214ENST00000477935 MMP20O60882 483 aa8.49□□□□□ -1.05
VPS50-214ENST00000477935 PDGFAP04085 211 aa8.49□□□□□ -1.05
VPS50-214ENST00000477935 MZF1P28698 734 aaPredicted RBP8.49□□□□□ -1.05
VPS50-214ENST00000477935 KANK3Q6NY19 840 aa8.49□□□□□ -1.05
VPS50-214ENST00000477935 TLR7Q9NYK1 1049 aaKnown RBP8.49□□□□□ -1.05
VPS50-214ENST00000477935 ZBTB42B2RXF5 422 aa8.48□□□□□ -1.05
VPS50-214ENST00000477935 FZD6O60353 706 aa8.48□□□□□ -1.05
VPS50-214ENST00000477935 ALBP02768 609 aa8.48□□□□□ -1.05
VPS50-214ENST00000477935 RPLP1P05386 114 aaKnown RBP8.48□□□□□ -1.05
VPS50-214ENST00000477935 PCSK2P16519 638 aa8.48□□□□□ -1.05
VPS50-214ENST00000477935 GPLD1P80108 840 aa8.48□□□□□ -1.05
VPS50-214ENST00000477935 KCNMA1Q12791 1236 aa8.48□□□□□ -1.05
VPS50-214ENST00000477935 PCSK7Q16549 785 aa8.48□□□□□ -1.05
VPS50-214ENST00000477935 ECM1Q16610 540 aa8.48□□□□□ -1.05
VPS50-214ENST00000477935 LINC00114Q6XXX2 140 aa8.48□□□□□ -1.05
VPS50-214ENST00000477935 TRPM4Q8TD43 1214 aa8.48□□□□□ -1.05
VPS50-214ENST00000477935 TRAIPQ9BWF2 469 aa8.48□□□□□ -1.05
VPS50-214ENST00000477935 NAGPAQ9UK23 515 aa8.48□□□□□ -1.05
VPS50-214ENST00000477935 POLIQ9UNA4 740 aa8.48□□□□□ -1.05
VPS50-214ENST00000477935 GNEQ9Y223 722 aaKnown RBP8.48□□□□□ -1.05
VPS50-214ENST00000477935 BAZ1BQ9UIG0 1483 aaKnown RBP8.47□□□□□ -1.05
VPS50-214ENST00000477935 PHF20L1A8MW92 1017 aa8.47□□□□□ -1.05
VPS50-214ENST00000477935 M0R082 166 aa8.47□□□□□ -1.05
VPS50-214ENST00000477935 PSAPP07602 524 aa8.47□□□□□ -1.05
VPS50-214ENST00000477935 IRS1P35568 1242 aa8.47□□□□□ -1.05
VPS50-214ENST00000477935 SOX18P35713 384 aa8.47□□□□□ -1.05
VPS50-214ENST00000477935 NRLP54845 237 aa8.47□□□□□ -1.05
VPS50-214ENST00000477935 MLLT1Q03111 559 aaPredicted RBP8.47□□□□□ -1.05
VPS50-214ENST00000477935 C8orf34Q49A92 452 aa8.47□□□□□ -1.05
VPS50-214ENST00000477935 PDE12Q6L8Q7 609 aaKnown RBP8.47□□□□□ -1.05
VPS50-214ENST00000477935 FAM35AQ86V20 835 aa8.47□□□□□ -1.05
VPS50-214ENST00000477935 MICALL1Q8N3F8 863 aa8.47□□□□□ -1.05
VPS50-214ENST00000477935 ZNF417Q8TAU3 575 aa8.47□□□□□ -1.05
VPS50-214ENST00000477935 ZNF587Q96SQ5 575 aaPredicted RBP8.47□□□□□ -1.05
VPS50-214ENST00000477935 GGNBP2Q9H3C7 697 aa8.47□□□□□ -1.05
VPS50-214ENST00000477935 RIMBP3CA6NJZ7 1639 aa8.47□□□□□ -1.05
VPS50-214ENST00000477935 RIMBP3BA6NNM3 1639 aa8.47□□□□□ -1.05
VPS50-214ENST00000477935 RIMBP3Q9UFD9 1639 aa8.47□□□□□ -1.05
VPS50-214ENST00000477935 CADPSQ9ULU8 1353 aa8.47□□□□□ -1.05
VPS50-214ENST00000477935 WDR62O43379 1518 aa8.46□□□□□ -1.05
VPS50-214ENST00000477935 GNB5O14775 395 aa8.46□□□□□ -1.06
VPS50-214ENST00000477935 GSK3AP49840 483 aa8.46□□□□□ -1.06
VPS50-214ENST00000477935 PLAURQ03405 335 aa8.46□□□□□ -1.06
VPS50-214ENST00000477935 C20orf204Q6ZNR8 217 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms