RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 TICAM2Q86XR7 235 aa21.51■■□□□ 1.03
CCM2-209ENST00000477605 USP25Q9UHP3 1055 aa21.51■■□□□ 1.03
CCM2-209ENST00000477605 NPHP3Q7Z494 1330 aa21.51■■□□□ 1.03
CCM2-209ENST00000477605 TRPM3Q9HCF6 1732 aaPredicted RBP21.5■■□□□ 1.03
CCM2-209ENST00000477605 DYNC1I1O14576 645 aa21.5■■□□□ 1.03
CCM2-209ENST00000477605 XAGE3Q8WTP9 111 aa21.5■■□□□ 1.03
CCM2-209ENST00000477605 SCAND2PQ9GZW5 306 aaPredicted RBP21.5■■□□□ 1.03
CCM2-209ENST00000477605 TLR7Q9NYK1 1049 aaKnown RBP21.5■■□□□ 1.03
CCM2-209ENST00000477605 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.5■■□□□ 1.03
CCM2-209ENST00000477605 CCDC192P0DO97 292 aa21.49■■□□□ 1.03
CCM2-209ENST00000477605 NECAB1Q8N987 351 aa21.49■■□□□ 1.03
CCM2-209ENST00000477605 PIBF1Q8WXW3 757 aa21.49■■□□□ 1.03
CCM2-209ENST00000477605 SOS2Q07890 1332 aaPredicted RBP21.49■■□□□ 1.03
CCM2-209ENST00000477605 LRP6O75581 1613 aa21.49■■□□□ 1.03
CCM2-209ENST00000477605 TAF5LO75529 589 aa21.49■■□□□ 1.03
CCM2-209ENST00000477605 TATP17735 454 aaPredicted RBP21.49■■□□□ 1.03
CCM2-209ENST00000477605 KIF1AQ12756 1690 aa21.49■■□□□ 1.03
CCM2-209ENST00000477605 PHKG2P15735 406 aa21.48■■□□□ 1.03
CCM2-209ENST00000477605 RABL6Q3YEC7 729 aaPredicted RBP21.48■■□□□ 1.03
CCM2-209ENST00000477605 LMOD2Q6P5Q4 547 aa21.48■■□□□ 1.03
CCM2-209ENST00000477605 ANKRD13DQ6ZTN6 518 aa21.48■■□□□ 1.03
CCM2-209ENST00000477605 COPS6Q7L5N1 327 aa21.48■■□□□ 1.03
CCM2-209ENST00000477605 SNRPA1P09661 255 aaKnown RBP21.48■■□□□ 1.03
CCM2-209ENST00000477605 GIMAP6Q6P9H5 292 aa21.48■■□□□ 1.03
CCM2-209ENST00000477605 MTERF4Q7Z6M4 381 aaKnown RBP21.48■■□□□ 1.03
CCM2-209ENST00000477605 MYD88Q99836 296 aa21.48■■□□□ 1.03
CCM2-209ENST00000477605 SIL1Q9H173 461 aa21.48■■□□□ 1.03
CCM2-209ENST00000477605 KDM6AO15550 1401 aaPredicted RBP21.47■■□□□ 1.03
CCM2-209ENST00000477605 UQCRHLA0A096LP55 91 aa21.47■■□□□ 1.03
CCM2-209ENST00000477605 UQCRHP07919 91 aa21.47■■□□□ 1.03
CCM2-209ENST00000477605 RFX5P48382 616 aaPredicted RBP21.47■■□□□ 1.03
CCM2-209ENST00000477605 TOB2Q14106 344 aaPredicted RBP21.47■■□□□ 1.03
CCM2-209ENST00000477605 U3KPZ7 1027 aaPredicted RBP21.47■■□□□ 1.03
CCM2-209ENST00000477605 LRP10Q7Z4F1 713 aa21.46■■□□□ 1.03
CCM2-209ENST00000477605 IFNL2Q8IZJ0 200 aa21.46■■□□□ 1.03
CCM2-209ENST00000477605 TNNI3KQ59H18 835 aa21.46■■□□□ 1.03
CCM2-209ENST00000477605 TTC6Q86TZ1 520 aa21.46■■□□□ 1.03
CCM2-209ENST00000477605 FPGT-TNNI3KV9GXZ4 949 aa21.46■■□□□ 1.03
CCM2-209ENST00000477605 TCHHQ07283 1943 aa21.46■■□□□ 1.03
CCM2-209ENST00000477605 SLC39A6Q13433 755 aa21.45■■□□□ 1.02
CCM2-209ENST00000477605 EPHA10Q5JZY3 1008 aa21.45■■□□□ 1.02
CCM2-209ENST00000477605 MYL6BP14649 208 aa21.44■■□□□ 1.02
CCM2-209ENST00000477605 PTPN12Q05209 780 aaKnown RBP21.44■■□□□ 1.02
CCM2-209ENST00000477605 CDC37L1Q7L3B6 337 aa21.44■■□□□ 1.02
CCM2-209ENST00000477605 DCAF5Q96JK2 942 aa21.44■■□□□ 1.02
CCM2-209ENST00000477605 PRIMPOLQ96LW4 560 aa21.44■■□□□ 1.02
CCM2-209ENST00000477605 MAP3K11Q16584 847 aa21.44■■□□□ 1.02
CCM2-209ENST00000477605 ZNF589Q86UQ0 364 aaPredicted RBP21.44■■□□□ 1.02
CCM2-209ENST00000477605 NFATC2IPQ8NCF5 419 aa21.44■■□□□ 1.02
CCM2-209ENST00000477605 ZNF496Q96IT1 587 aaPredicted RBP21.44■■□□□ 1.02
CCM2-209ENST00000477605 NUP62CLQ9H1M0 184 aa21.44■■□□□ 1.02
CCM2-209ENST00000477605 DDX19AQ9NUU7 478 aaKnown RBP21.44■■□□□ 1.02
CCM2-209ENST00000477605 SPTLC3Q9NUV7 552 aa21.44■■□□□ 1.02
CCM2-209ENST00000477605 NOLC1Q14978 699 aaKnown RBP eCLIP21.43■■□□□ 1.02
CCM2-209ENST00000477605 TTC5Q8N0Z6 440 aa21.43■■□□□ 1.02
CCM2-209ENST00000477605 DDX54Q8TDD1 881 aaKnown RBP21.43■■□□□ 1.02
CCM2-209ENST00000477605 DBNLQ9UJU6 430 aaKnown RBP21.43■■□□□ 1.02
CCM2-209ENST00000477605 SCN11AQ9UI33 1791 aa21.43■■□□□ 1.02
CCM2-209ENST00000477605 GOLGA6L6A8MZA4 724 aa21.43■■□□□ 1.02
CCM2-209ENST00000477605 HMGN5P82970 282 aaKnown RBP21.43■■□□□ 1.02
CCM2-209ENST00000477605 FAM200AQ8TCP9 573 aa21.43■■□□□ 1.02
CCM2-209ENST00000477605 FMNL2Q96PY5 1086 aa21.43■■□□□ 1.02
CCM2-209ENST00000477605 NEK1Q96PY6 1258 aa21.43■■□□□ 1.02
CCM2-209ENST00000477605 HAUS7Q99871 368 aa21.43■■□□□ 1.02
CCM2-209ENST00000477605 NLRP2Q9NX02 1062 aa21.43■■□□□ 1.02
CCM2-209ENST00000477605 NUTM2BA6NNL0 878 aaPredicted RBP21.42■■□□□ 1.02
CCM2-209ENST00000477605 NUTM2EB1AL46 878 aaPredicted RBP21.42■■□□□ 1.02
CCM2-209ENST00000477605 NUTM2AQ8IVF1 878 aaPredicted RBP21.42■■□□□ 1.02
CCM2-209ENST00000477605 KLHDC4Q8TBB5 520 aa21.42■■□□□ 1.02
CCM2-209ENST00000477605 SOCS7O14512 581 aa21.41■■□□□ 1.02
CCM2-209ENST00000477605 HMGB1P09429 215 aaKnown RBP21.41■■□□□ 1.02
CCM2-209ENST00000477605 TFCP2Q12800 502 aa21.41■■□□□ 1.02
CCM2-209ENST00000477605 MCMDC2Q4G0Z9 681 aa21.41■■□□□ 1.02
CCM2-209ENST00000477605 GTF3C6Q969F1 213 aa21.41■■□□□ 1.02
CCM2-209ENST00000477605 GOLGA6L4A6NEF3 574 aa21.41■■□□□ 1.02
CCM2-209ENST00000477605 RBM43Q6ZSC3 357 aaKnown RBP21.41■■□□□ 1.02
CCM2-209ENST00000477605 SPATA32Q96LK8 384 aa21.41■■□□□ 1.02
CCM2-209ENST00000477605 C5P01031 1676 aa21.41■■□□□ 1.02
CCM2-209ENST00000477605 MEX3CQ5U5Q3 659 aaKnown RBP21.4■■□□□ 1.02
CCM2-209ENST00000477605 LLPHQ9BRT6 129 aaKnown RBP21.4■■□□□ 1.02
CCM2-209ENST00000477605 ZSCAN16Q9H4T2 348 aaPredicted RBP21.4■■□□□ 1.02
CCM2-209ENST00000477605 ZC3H6P61129 1189 aaKnown RBP21.4■■□□□ 1.02
CCM2-209ENST00000477605 POTEAQ6S8J7 498 aa21.4■■□□□ 1.02
CCM2-209ENST00000477605 PLBD2Q8NHP8 589 aa21.4■■□□□ 1.02
CCM2-209ENST00000477605 GPR108Q9NPR9 543 aa21.4■■□□□ 1.02
CCM2-209ENST00000477605 MYRIPQ8NFW9 859 aa21.39■■□□□ 1.01
CCM2-209ENST00000477605 LEO1Q8WVC0 666 aaPredicted RBP21.39■■□□□ 1.01
CCM2-209ENST00000477605 USP16Q9Y5T5 823 aa21.39■■□□□ 1.01
CCM2-209ENST00000477605 ALS2Q96Q42 1657 aa21.39■■□□□ 1.01
CCM2-209ENST00000477605 CAVIN2O95810 425 aa21.38■■□□□ 1.01
CCM2-209ENST00000477605 TYRO3Q06418 890 aa21.38■■□□□ 1.01
CCM2-209ENST00000477605 FERMT3Q86UX7 667 aa21.38■■□□□ 1.01
CCM2-209ENST00000477605 CHMP4CQ96CF2 233 aa21.38■■□□□ 1.01
CCM2-209ENST00000477605 TAF6LQ9Y6J9 622 aa21.38■■□□□ 1.01
CCM2-209ENST00000477605 SH3TC1Q8TE82 1336 aa21.38■■□□□ 1.01
CCM2-209ENST00000477605 CASP7P55210 303 aa21.38■■□□□ 1.01
CCM2-209ENST00000477605 TNMDQ9H2S6 317 aa21.38■■□□□ 1.01
CCM2-209ENST00000477605 CLSTN2Q9H4D0 955 aa21.38■■□□□ 1.01
CCM2-209ENST00000477605 TTC12Q9H892 705 aaPredicted RBP21.38■■□□□ 1.01
CCM2-209ENST00000477605 A0A087WZG4 1122 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms