RNA–Protein interactions for RNA: ENST00000477508.1

TOP3A-205, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 600 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-205ENST00000477508 TRIM27P14373 513 aa16.56■□□□□ 0.24
TOP3A-205ENST00000477508 PRPF40BQ6NWY9 871 aaKnown RBP16.56■□□□□ 0.24
TOP3A-205ENST00000477508 C3orf67Q6ZVT6 689 aa16.56■□□□□ 0.24
TOP3A-205ENST00000477508 HDAC5Q9UQL6 1122 aa16.56■□□□□ 0.24
TOP3A-205ENST00000477508 ARFGEF1Q9Y6D6 1849 aa16.56■□□□□ 0.24
TOP3A-205ENST00000477508 UTYO14607 1347 aa16.55■□□□□ 0.24
TOP3A-205ENST00000477508 ABCC4O15439 1325 aa16.55■□□□□ 0.24
TOP3A-205ENST00000477508 BBOX1O75936 387 aa16.55■□□□□ 0.24
TOP3A-205ENST00000477508 CASP7P55210 303 aa16.55■□□□□ 0.24
TOP3A-205ENST00000477508 CTSWP56202 376 aa16.55■□□□□ 0.24
TOP3A-205ENST00000477508 GRIPAP1Q4V328 841 aa16.55■□□□□ 0.24
TOP3A-205ENST00000477508 INTS3Q68E01 1043 aaKnown RBP16.55■□□□□ 0.24
TOP3A-205ENST00000477508 CC2D2BQ6DHV5 1058 aa16.55■□□□□ 0.24
TOP3A-205ENST00000477508 TMC4Q7Z404 712 aa16.55■□□□□ 0.24
TOP3A-205ENST00000477508 JARID2Q92833 1246 aaPredicted RBP16.55■□□□□ 0.24
TOP3A-205ENST00000477508 TMX4Q9H1E5 349 aaPredicted RBP16.55■□□□□ 0.24
TOP3A-205ENST00000477508 WWC3Q9ULE0 1092 aa16.55■□□□□ 0.24
TOP3A-205ENST00000477508 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.54■□□□□ 0.24
TOP3A-205ENST00000477508 GRAPQ13588 217 aa16.53■□□□□ 0.24
TOP3A-205ENST00000477508 FTSJ3Q8IY81 847 aaKnown RBP16.53■□□□□ 0.24
TOP3A-205ENST00000477508 TTLL11Q8NHH1 800 aa16.53■□□□□ 0.24
TOP3A-205ENST00000477508 GRAPLQ8TC17 118 aaPredicted RBP16.53■□□□□ 0.24
TOP3A-205ENST00000477508 MYH3P11055 1940 aa16.53■□□□□ 0.24
TOP3A-205ENST00000477508 RTL9Q8NET4 1388 aa16.52■□□□□ 0.24
TOP3A-205ENST00000477508 SLX4Q8IY92 1834 aa16.52■□□□□ 0.24
TOP3A-205ENST00000477508 ARHGAP27Q6ZUM4 889 aa16.52■□□□□ 0.24
TOP3A-205ENST00000477508 DZIP1LQ8IYY4 767 aaKnown RBP16.52■□□□□ 0.24
TOP3A-205ENST00000477508 C7orf43Q8WVR3 580 aa16.52■□□□□ 0.24
TOP3A-205ENST00000477508 USP44Q9H0E7 712 aa16.52■□□□□ 0.24
TOP3A-205ENST00000477508 PPEF1O14829 653 aaPredicted RBP16.51■□□□□ 0.23
TOP3A-205ENST00000477508 C21orf2O43822 256 aa16.51■□□□□ 0.23
TOP3A-205ENST00000477508 CSF1RP07333 972 aa16.51■□□□□ 0.23
TOP3A-205ENST00000477508 NBPF7P0C2Y1 421 aaPredicted RBP16.51■□□□□ 0.23
TOP3A-205ENST00000477508 CCDC93Q567U6 631 aa16.51■□□□□ 0.23
TOP3A-205ENST00000477508 RTKN2Q8IZC4 609 aa16.51■□□□□ 0.23
TOP3A-205ENST00000477508 CDC5LQ99459 802 aaKnown RBP16.51■□□□□ 0.23
TOP3A-205ENST00000477508 UTRNP46939 3433 aa16.51■□□□□ 0.23
TOP3A-205ENST00000477508 GNAI3P08754 354 aa16.5■□□□□ 0.23
TOP3A-205ENST00000477508 UBTFL1P0CB47 393 aaPredicted RBP16.5■□□□□ 0.23
TOP3A-205ENST00000477508 RPS8P62241 208 aaKnown RBP16.5■□□□□ 0.23
TOP3A-205ENST00000477508 CLUAP1Q96AJ1 413 aa16.5■□□□□ 0.23
TOP3A-205ENST00000477508 ATP6V0A2Q9Y487 856 aa16.5■□□□□ 0.23
TOP3A-205ENST00000477508 FOXO4P98177 505 aa16.49■□□□□ 0.23
TOP3A-205ENST00000477508 CACNA1SQ13698 1873 aa16.49■□□□□ 0.23
TOP3A-205ENST00000477508 SP8Q8IXZ3 490 aa16.49■□□□□ 0.23
TOP3A-205ENST00000477508 ANKRD18AQ8IVF6 992 aa16.48■□□□□ 0.23
TOP3A-205ENST00000477508 TMEM57Q8N5G2 664 aa16.48■□□□□ 0.23
TOP3A-205ENST00000477508 GREM2Q9H772 168 aa16.48■□□□□ 0.23
TOP3A-205ENST00000477508 ZNF219Q9P2Y4 722 aaPredicted RBP16.48■□□□□ 0.23
TOP3A-205ENST00000477508 LTBP3Q9NS15 1303 aa16.47■□□□□ 0.23
TOP3A-205ENST00000477508 ANKRD18BA2A2Z9 1011 aa16.47■□□□□ 0.23
TOP3A-205ENST00000477508 IFIT5Q13325 482 aaKnown RBP16.47■□□□□ 0.23
TOP3A-205ENST00000477508 CCDC57Q2TAC2 916 aa16.47■□□□□ 0.23
TOP3A-205ENST00000477508 LMBR1LQ6UX01 489 aa16.47■□□□□ 0.23
TOP3A-205ENST00000477508 CELF1Q92879 486 aaKnown RBP16.47■□□□□ 0.23
TOP3A-205ENST00000477508 SUCLG2Q96I99 432 aa16.47■□□□□ 0.23
TOP3A-205ENST00000477508 CCDC85AQ96PX6 553 aaPredicted RBP16.47■□□□□ 0.23
TOP3A-205ENST00000477508 SEC31BQ9NQW1 1179 aa16.47■□□□□ 0.23
TOP3A-205ENST00000477508 CHD4Q14839 1912 aa16.47■□□□□ 0.23
TOP3A-205ENST00000477508 ITGA6P23229 1130 aa16.46■□□□□ 0.23
TOP3A-205ENST00000477508 IGHMBP2P38935 993 aaKnown RBP16.46■□□□□ 0.23
TOP3A-205ENST00000477508 PDE3AQ14432 1141 aa16.46■□□□□ 0.23
TOP3A-205ENST00000477508 RABL6Q3YEC7 729 aaPredicted RBP16.46■□□□□ 0.23
TOP3A-205ENST00000477508 KAZALD1Q96I82 304 aa16.46■□□□□ 0.23
TOP3A-205ENST00000477508 TAOK3Q9H2K8 898 aa16.46■□□□□ 0.23
TOP3A-205ENST00000477508 CHMP3Q9Y3E7 222 aa16.46■□□□□ 0.23
TOP3A-205ENST00000477508 LMNB1P20700 586 aa16.45■□□□□ 0.22
TOP3A-205ENST00000477508 FKBP4Q02790 459 aaKnown RBP eCLIP16.45■□□□□ 0.22
TOP3A-205ENST00000477508 FAM161AQ3B820 660 aa16.45■□□□□ 0.22
TOP3A-205ENST00000477508 EPHA10Q5JZY3 1008 aa16.45■□□□□ 0.22
TOP3A-205ENST00000477508 ITPRIPQ8IWB1 547 aa16.45■□□□□ 0.22
TOP3A-205ENST00000477508 PSMD1Q99460 953 aa16.45■□□□□ 0.22
TOP3A-205ENST00000477508 MEIS3Q99687 375 aa16.45■□□□□ 0.22
TOP3A-205ENST00000477508 CHMP4BQ9H444 224 aaKnown RBP16.45■□□□□ 0.22
TOP3A-205ENST00000477508 BICC1Q9H694 974 aaKnown RBP16.45■□□□□ 0.22
TOP3A-205ENST00000477508 BSDC1Q9NW68 430 aaPredicted RBP16.45■□□□□ 0.22
TOP3A-205ENST00000477508 TNNQ9UQP3 1299 aa16.45■□□□□ 0.22
TOP3A-205ENST00000477508 FER1L6Q2WGJ9 1857 aa16.45■□□□□ 0.22
TOP3A-205ENST00000477508 NFKBIEO00221 500 aa16.44■□□□□ 0.22
TOP3A-205ENST00000477508 SUPT20HQ8NEM7 779 aa16.44■□□□□ 0.22
TOP3A-205ENST00000477508 MPHOSPH8Q99549 860 aa16.44■□□□□ 0.22
TOP3A-205ENST00000477508 GNAI2P04899 355 aa16.43■□□□□ 0.22
TOP3A-205ENST00000477508 RLBP1P12271 317 aa16.43■□□□□ 0.22
TOP3A-205ENST00000477508 TAF7LQ5H9L4 462 aa16.43■□□□□ 0.22
TOP3A-205ENST00000477508 DPP8Q6V1X1 898 aaPredicted RBP16.43■□□□□ 0.22
TOP3A-205ENST00000477508 MPNDQ8N594 471 aa16.43■□□□□ 0.22
TOP3A-205ENST00000477508 PANK1Q8TE04 598 aa16.43■□□□□ 0.22
TOP3A-205ENST00000477508 VPS33BQ9H267 617 aa16.43■□□□□ 0.22
TOP3A-205ENST00000477508 TAF1P21675 1872 aa16.43■□□□□ 0.22
TOP3A-205ENST00000477508 PLIN1O60240 522 aa16.42■□□□□ 0.22
TOP3A-205ENST00000477508 ATXN8OSP0DMR3 200 aa16.42■□□□□ 0.22
TOP3A-205ENST00000477508 ANKRD44Q8N8A2 993 aa16.42■□□□□ 0.22
TOP3A-205ENST00000477508 RTFDC1Q9BY42 306 aaPredicted RBP16.42■□□□□ 0.22
TOP3A-205ENST00000477508 DDX19BQ9UMR2 479 aa16.42■□□□□ 0.22
TOP3A-205ENST00000477508 LRRFIP2Q9Y608 721 aaKnown RBP16.42■□□□□ 0.22
TOP3A-205ENST00000477508 ZBTB7BO15156 539 aaPredicted RBP16.41■□□□□ 0.22
TOP3A-205ENST00000477508 YY1P25490 414 aa16.41■□□□□ 0.22
TOP3A-205ENST00000477508 RASSF7Q02833 373 aa16.41■□□□□ 0.22
TOP3A-205ENST00000477508 MVPQ14764 893 aaKnown RBP16.41■□□□□ 0.22
TOP3A-205ENST00000477508 OLFM4Q6UX06 510 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms