RNA–Protein interactions for RNA: ENST00000476642.5

HLA-DPA1-246, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 519 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-246ENST00000476642 FTSJ3Q8IY81 847 aaKnown RBP16.65■□□□□ 0.26
HLA-DPA1-246ENST00000476642 ARFGEF1Q9Y6D6 1849 aa16.65■□□□□ 0.26
HLA-DPA1-246ENST00000476642 TRIM27P14373 513 aa16.64■□□□□ 0.25
HLA-DPA1-246ENST00000476642 HOXA10P31260 410 aaPredicted RBP16.64■□□□□ 0.25
HLA-DPA1-246ENST00000476642 SF3B3Q15393 1217 aaKnown RBP16.64■□□□□ 0.25
HLA-DPA1-246ENST00000476642 RTL5Q5HYW3 569 aaPredicted RBP16.64■□□□□ 0.25
HLA-DPA1-246ENST00000476642 UBE3BQ7Z3V4 1068 aa16.64■□□□□ 0.25
HLA-DPA1-246ENST00000476642 ABCC4O15439 1325 aa16.64■□□□□ 0.25
HLA-DPA1-246ENST00000476642 CCDC152Q4G0S7 254 aa16.63■□□□□ 0.25
HLA-DPA1-246ENST00000476642 SOGA3Q5TF21 947 aa16.63■□□□□ 0.25
HLA-DPA1-246ENST00000476642 INTS3Q68E01 1043 aaKnown RBP16.63■□□□□ 0.25
HLA-DPA1-246ENST00000476642 DDX46Q7L014 1031 aaKnown RBP16.63■□□□□ 0.25
HLA-DPA1-246ENST00000476642 RBM46Q8TBY0 533 aaKnown RBP16.63■□□□□ 0.25
HLA-DPA1-246ENST00000476642 CRAMP1Q96RY5 1269 aa16.63■□□□□ 0.25
HLA-DPA1-246ENST00000476642 PLA2G12BQ9BX93 195 aa16.63■□□□□ 0.25
HLA-DPA1-246ENST00000476642 TMX4Q9H1E5 349 aaPredicted RBP16.63■□□□□ 0.25
HLA-DPA1-246ENST00000476642 CACNA1SQ13698 1873 aa16.63■□□□□ 0.25
HLA-DPA1-246ENST00000476642 IFFO2Q5TF58 517 aa16.62■□□□□ 0.25
HLA-DPA1-246ENST00000476642 DZIP1LQ8IYY4 767 aaKnown RBP16.62■□□□□ 0.25
HLA-DPA1-246ENST00000476642 SYNE4Q8N205 404 aa16.62■□□□□ 0.25
HLA-DPA1-246ENST00000476642 UTYO14607 1347 aa16.62■□□□□ 0.25
HLA-DPA1-246ENST00000476642 TMC4Q7Z404 712 aa16.61■□□□□ 0.25
HLA-DPA1-246ENST00000476642 RRAGCQ9HB90 399 aa16.61■□□□□ 0.25
HLA-DPA1-246ENST00000476642 BBOX1O75936 387 aa16.6■□□□□ 0.25
HLA-DPA1-246ENST00000476642 CASP7P55210 303 aa16.6■□□□□ 0.25
HLA-DPA1-246ENST00000476642 CTSWP56202 376 aa16.6■□□□□ 0.25
HLA-DPA1-246ENST00000476642 RASSF7Q02833 373 aa16.6■□□□□ 0.25
HLA-DPA1-246ENST00000476642 GRIPAP1Q4V328 841 aa16.6■□□□□ 0.25
HLA-DPA1-246ENST00000476642 CC2D2BQ6DHV5 1058 aa16.6■□□□□ 0.25
HLA-DPA1-246ENST00000476642 CEP350Q5VT06 3117 aa16.6■□□□□ 0.25
HLA-DPA1-246ENST00000476642 GNAI3P08754 354 aa16.59■□□□□ 0.25
HLA-DPA1-246ENST00000476642 LMNB1P20700 586 aa16.59■□□□□ 0.25
HLA-DPA1-246ENST00000476642 FSTL1Q12841 308 aa16.59■□□□□ 0.25
HLA-DPA1-246ENST00000476642 PRPF40BQ6NWY9 871 aaKnown RBP16.59■□□□□ 0.25
HLA-DPA1-246ENST00000476642 CLUAP1Q96AJ1 413 aa16.59■□□□□ 0.25
HLA-DPA1-246ENST00000476642 CHMP4BQ9H444 224 aaKnown RBP16.59■□□□□ 0.25
HLA-DPA1-246ENST00000476642 RTL9Q8NET4 1388 aa16.59■□□□□ 0.25
HLA-DPA1-246ENST00000476642 UBTFL1P0CB47 393 aaPredicted RBP16.58■□□□□ 0.24
HLA-DPA1-246ENST00000476642 GRAPQ13588 217 aa16.58■□□□□ 0.24
HLA-DPA1-246ENST00000476642 GRAPLQ8TC17 118 aaPredicted RBP16.58■□□□□ 0.24
HLA-DPA1-246ENST00000476642 JARID2Q92833 1246 aaPredicted RBP16.58■□□□□ 0.24
HLA-DPA1-246ENST00000476642 CDC5LQ99459 802 aaKnown RBP16.58■□□□□ 0.24
HLA-DPA1-246ENST00000476642 USP44Q9H0E7 712 aa16.58■□□□□ 0.24
HLA-DPA1-246ENST00000476642 ZC3H4Q9UPT8 1303 aaKnown RBP16.58■□□□□ 0.24
HLA-DPA1-246ENST00000476642 SLX4Q8IY92 1834 aa16.57■□□□□ 0.24
HLA-DPA1-246ENST00000476642 NBPF7P0C2Y1 421 aaPredicted RBP16.57■□□□□ 0.24
HLA-DPA1-246ENST00000476642 PDE3AQ14432 1141 aa16.57■□□□□ 0.24
HLA-DPA1-246ENST00000476642 C3orf67Q6ZVT6 689 aa16.57■□□□□ 0.24
HLA-DPA1-246ENST00000476642 TTLL11Q8NHH1 800 aa16.57■□□□□ 0.24
HLA-DPA1-246ENST00000476642 PPEF1O14829 653 aaPredicted RBP16.56■□□□□ 0.24
HLA-DPA1-246ENST00000476642 CSF1RP07333 972 aa16.56■□□□□ 0.24
HLA-DPA1-246ENST00000476642 TMEM57Q8N5G2 664 aa16.56■□□□□ 0.24
HLA-DPA1-246ENST00000476642 SMC1BQ8NDV3 1235 aa16.56■□□□□ 0.24
HLA-DPA1-246ENST00000476642 ZNF219Q9P2Y4 722 aaPredicted RBP16.56■□□□□ 0.24
HLA-DPA1-246ENST00000476642 RPS8P62241 208 aaKnown RBP16.55■□□□□ 0.24
HLA-DPA1-246ENST00000476642 CCDC93Q567U6 631 aa16.55■□□□□ 0.24
HLA-DPA1-246ENST00000476642 ANKRD18AQ8IVF6 992 aa16.55■□□□□ 0.24
HLA-DPA1-246ENST00000476642 ITPRIPQ8IWB1 547 aa16.55■□□□□ 0.24
HLA-DPA1-246ENST00000476642 RTKN2Q8IZC4 609 aa16.55■□□□□ 0.24
HLA-DPA1-246ENST00000476642 ANKRD18BA2A2Z9 1011 aa16.54■□□□□ 0.24
HLA-DPA1-246ENST00000476642 GLTPD2A6NH11 291 aa16.54■□□□□ 0.24
HLA-DPA1-246ENST00000476642 C21orf2O43822 256 aa16.54■□□□□ 0.24
HLA-DPA1-246ENST00000476642 FOXO4P98177 505 aa16.54■□□□□ 0.24
HLA-DPA1-246ENST00000476642 IFIT5Q13325 482 aaKnown RBP16.54■□□□□ 0.24
HLA-DPA1-246ENST00000476642 CCDC57Q2TAC2 916 aa16.54■□□□□ 0.24
HLA-DPA1-246ENST00000476642 DPY19L2Q6NUT2 758 aa16.54■□□□□ 0.24
HLA-DPA1-246ENST00000476642 SP8Q8IXZ3 490 aa16.54■□□□□ 0.24
HLA-DPA1-246ENST00000476642 SUCLG2Q96I99 432 aa16.54■□□□□ 0.24
HLA-DPA1-246ENST00000476642 CHMP3Q9Y3E7 222 aa16.54■□□□□ 0.24
HLA-DPA1-246ENST00000476642 ATP6V0A2Q9Y487 856 aa16.54■□□□□ 0.24
HLA-DPA1-246ENST00000476642 VEGFAP15692 232 aaPredicted RBP16.53■□□□□ 0.24
HLA-DPA1-246ENST00000476642 ITGA6P23229 1130 aa16.53■□□□□ 0.24
HLA-DPA1-246ENST00000476642 IGHMBP2P38935 993 aaKnown RBP16.53■□□□□ 0.24
HLA-DPA1-246ENST00000476642 RABL6Q3YEC7 729 aaPredicted RBP16.53■□□□□ 0.24
HLA-DPA1-246ENST00000476642 LMBR1LQ6UX01 489 aa16.53■□□□□ 0.24
HLA-DPA1-246ENST00000476642 DNAJC5GQ8N7S2 189 aa16.53■□□□□ 0.24
HLA-DPA1-246ENST00000476642 C7orf43Q8WVR3 580 aa16.53■□□□□ 0.24
HLA-DPA1-246ENST00000476642 GREM2Q9H772 168 aa16.53■□□□□ 0.24
HLA-DPA1-246ENST00000476642 DDX19BQ9UMR2 479 aa16.53■□□□□ 0.24
HLA-DPA1-246ENST00000476642 FER1L6Q2WGJ9 1857 aa16.52■□□□□ 0.24
HLA-DPA1-246ENST00000476642 GNAI2P04899 355 aa16.52■□□□□ 0.24
HLA-DPA1-246ENST00000476642 TAF7LQ5H9L4 462 aa16.52■□□□□ 0.24
HLA-DPA1-246ENST00000476642 CCDC85AQ96PX6 553 aaPredicted RBP16.52■□□□□ 0.24
HLA-DPA1-246ENST00000476642 MPHOSPH8Q99549 860 aa16.52■□□□□ 0.24
HLA-DPA1-246ENST00000476642 MEIS3Q99687 375 aa16.52■□□□□ 0.24
HLA-DPA1-246ENST00000476642 BICC1Q9H694 974 aaKnown RBP16.52■□□□□ 0.24
HLA-DPA1-246ENST00000476642 TNNQ9UQP3 1299 aa16.52■□□□□ 0.24
HLA-DPA1-246ENST00000476642 TAF1P21675 1872 aa16.52■□□□□ 0.23
HLA-DPA1-246ENST00000476642 LTBP3Q9NS15 1303 aa16.51■□□□□ 0.23
HLA-DPA1-246ENST00000476642 NFKBIEO00221 500 aa16.51■□□□□ 0.23
HLA-DPA1-246ENST00000476642 RRP1P56182 461 aaKnown RBP16.51■□□□□ 0.23
HLA-DPA1-246ENST00000476642 MVPQ14764 893 aaKnown RBP16.51■□□□□ 0.23
HLA-DPA1-246ENST00000476642 CELF1Q92879 486 aaKnown RBP16.51■□□□□ 0.23
HLA-DPA1-246ENST00000476642 KLRG1Q96E93 195 aa16.51■□□□□ 0.23
HLA-DPA1-246ENST00000476642 SEC31BQ9NQW1 1179 aa16.51■□□□□ 0.23
HLA-DPA1-246ENST00000476642 LRRC37AA6NMS7 1700 aa16.5■□□□□ 0.23
HLA-DPA1-246ENST00000476642 PLIN1O60240 522 aa16.5■□□□□ 0.23
HLA-DPA1-246ENST00000476642 RLBP1P12271 317 aa16.5■□□□□ 0.23
HLA-DPA1-246ENST00000476642 HTRA3P83110 453 aa16.5■□□□□ 0.23
HLA-DPA1-246ENST00000476642 FAM161AQ3B820 660 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms