RNA–Protein interactions for RNA: ENST00000476494.1

CLDN4-205, Transcript of claudin 4, humanhuman

TSL 4

Gene CLDN4, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-205ENST00000476494 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.84□□□□□ -0.99
CLDN4-205ENST00000476494 MICALL2Q8IY33 904 aa8.84□□□□□ -0.99
CLDN4-205ENST00000476494 DPF2Q92785 391 aa8.84□□□□□ -0.99
CLDN4-205ENST00000476494 ZNF496Q96IT1 587 aaPredicted RBP8.84□□□□□ -0.99
CLDN4-205ENST00000476494 CARD11Q9BXL7 1154 aa8.84□□□□□ -0.99
CLDN4-205ENST00000476494 MTMR10Q9NXD2 777 aa8.84□□□□□ -0.99
CLDN4-205ENST00000476494 RAPGEFL1Q9UHV5 662 aa8.84□□□□□ -0.99
CLDN4-205ENST00000476494 ZBTB12Q9Y330 459 aaPredicted RBP8.84□□□□□ -0.99
CLDN4-205ENST00000476494 RIC1Q4ADV7 1423 aa8.83□□□□□ -1
CLDN4-205ENST00000476494 ZNF316A6NFI3 1004 aaPredicted RBP8.83□□□□□ -1
CLDN4-205ENST00000476494 H7C1D1 291 aa8.83□□□□□ -1
CLDN4-205ENST00000476494 FKBP1BP68106 108 aa8.83□□□□□ -1
CLDN4-205ENST00000476494 MOB2Q70IA6 237 aa8.83□□□□□ -1
CLDN4-205ENST00000476494 UBE2Q1Q7Z7E8 422 aa8.83□□□□□ -1
CLDN4-205ENST00000476494 CDCA5Q96FF9 252 aa8.83□□□□□ -1
CLDN4-205ENST00000476494 ASTN2O75129 1339 aaPredicted RBP8.82□□□□□ -1
CLDN4-205ENST00000476494 WTIPA6NIX2 430 aaPredicted RBP8.82□□□□□ -1
CLDN4-205ENST00000476494 PLA2G5P39877 138 aa8.82□□□□□ -1
CLDN4-205ENST00000476494 KIAA2012Q0VF49 1180 aa8.82□□□□□ -1
CLDN4-205ENST00000476494 TNIP1Q15025 636 aa8.82□□□□□ -1
CLDN4-205ENST00000476494 TBC1D10BQ4KMP7 808 aaPredicted RBP8.82□□□□□ -1
CLDN4-205ENST00000476494 DZIP3Q86Y13 1208 aaKnown RBP8.82□□□□□ -1
CLDN4-205ENST00000476494 CRAMP1Q96RY5 1269 aa8.82□□□□□ -1
CLDN4-205ENST00000476494 BCL2L13Q9BXK5 485 aa8.82□□□□□ -1
CLDN4-205ENST00000476494 ABCC12Q96J65 1359 aa8.82□□□□□ -1
CLDN4-205ENST00000476494 HEG1Q9ULI3 1381 aa8.82□□□□□ -1
CLDN4-205ENST00000476494 PRAMEF22A3QJZ6 481 aa8.81□□□□□ -1
CLDN4-205ENST00000476494 RGL2O15211 777 aa8.81□□□□□ -1
CLDN4-205ENST00000476494 Q7L0L9 218 aa8.81□□□□□ -1
CLDN4-205ENST00000476494 DEFB123Q8N688 67 aa8.81□□□□□ -1
CLDN4-205ENST00000476494 DCPSQ96C86 337 aaKnown RBP8.81□□□□□ -1
CLDN4-205ENST00000476494 TMEM106CQ9BVX2 250 aa8.81□□□□□ -1
CLDN4-205ENST00000476494 TEX13AQ9BXU3 409 aaPredicted RBP8.81□□□□□ -1
CLDN4-205ENST00000476494 ZNF330Q9Y3S2 320 aaPredicted RBP8.81□□□□□ -1
CLDN4-205ENST00000476494 ZNF609O15014 1411 aa8.8□□□□□ -1
CLDN4-205ENST00000476494 EIF4G2P78344 907 aaKnown RBP eCLIP8.8□□□□□ -1
CLDN4-205ENST00000476494 SHISA4Q96DD7 197 aa8.8□□□□□ -1
CLDN4-205ENST00000476494 NIP7Q9Y221 180 aaKnown RBP eCLIP8.8□□□□□ -1
CLDN4-205ENST00000476494 LAMB1P07942 1786 aa8.8□□□□□ -1
CLDN4-205ENST00000476494 UBE2Q2LH0YL09 131 aa8.79□□□□□ -1
CLDN4-205ENST00000476494 PPEF1O14829 653 aaPredicted RBP8.79□□□□□ -1
CLDN4-205ENST00000476494 ZBTB7BO15156 539 aaPredicted RBP8.79□□□□□ -1
CLDN4-205ENST00000476494 ANKRD13DQ6ZTN6 518 aa8.79□□□□□ -1
CLDN4-205ENST00000476494 C3orf67Q6ZVT6 689 aa8.79□□□□□ -1
CLDN4-205ENST00000476494 ATP6V0A2Q9Y487 856 aa8.79□□□□□ -1
CLDN4-205ENST00000476494 LAMA2P24043 3122 aaKnown RBP8.79□□□□□ -1
CLDN4-205ENST00000476494 PSMD14O00487 310 aa8.78□□□□□ -1
CLDN4-205ENST00000476494 TCERG1O14776 1098 aaKnown RBP8.78□□□□□ -1
CLDN4-205ENST00000476494 PIP4K2AP48426 406 aaPredicted RBP8.78□□□□□ -1
CLDN4-205ENST00000476494 HLFQ16534 295 aa8.78□□□□□ -1
CLDN4-205ENST00000476494 ZNF790Q6PG37 636 aa8.78□□□□□ -1
CLDN4-205ENST00000476494 SULF1Q8IWU6 871 aa8.78□□□□□ -1
CLDN4-205ENST00000476494 CD99L2Q8TCZ2 262 aa8.78□□□□□ -1
CLDN4-205ENST00000476494 DPF3Q92784 378 aa8.78□□□□□ -1
CLDN4-205ENST00000476494 GGA3Q9NZ52 723 aa8.78□□□□□ -1
CLDN4-205ENST00000476494 ZNF646O15015 1829 aaPredicted RBP8.77□□□□□ -1
CLDN4-205ENST00000476494 SIPA1L3O60292 1781 aaPredicted RBP8.77□□□□□ -1.01
CLDN4-205ENST00000476494 FAM177BA6PVY3 158 aa8.77□□□□□ -1.01
CLDN4-205ENST00000476494 SREBF2Q12772 1141 aa8.77□□□□□ -1.01
CLDN4-205ENST00000476494 RBM26Q5T8P6 1007 aaKnown RBP8.77□□□□□ -1.01
CLDN4-205ENST00000476494 SULT6B1Q6IMI4 303 aa8.77□□□□□ -1.01
CLDN4-205ENST00000476494 NUTM1Q86Y26 1132 aa8.77□□□□□ -1.01
CLDN4-205ENST00000476494 IFNL1Q8IU54 200 aa8.77□□□□□ -1.01
CLDN4-205ENST00000476494 ERO1AQ96HE7 468 aa8.77□□□□□ -1.01
CLDN4-205ENST00000476494 EFCC1Q9HA90 598 aa8.77□□□□□ -1.01
CLDN4-205ENST00000476494 KCNQ5Q9NR82 932 aa8.77□□□□□ -1.01
CLDN4-205ENST00000476494 USP16Q9Y5T5 823 aa8.77□□□□□ -1.01
CLDN4-205ENST00000476494 DUOX1Q9NRD9 1551 aa8.77□□□□□ -1.01
CLDN4-205ENST00000476494 SCN9AQ15858 1988 aa8.77□□□□□ -1.01
CLDN4-205ENST00000476494 TAF1P21675 1872 aa8.77□□□□□ -1.01
CLDN4-205ENST00000476494 RTL9Q8NET4 1388 aa8.76□□□□□ -1.01
CLDN4-205ENST00000476494 NBPF26B4DH59 902 aa8.76□□□□□ -1.01
CLDN4-205ENST00000476494 IGF2BP3O00425 579 aaKnown RBP eCLIP8.76□□□□□ -1.01
CLDN4-205ENST00000476494 SLC24A1O60721 1099 aa8.76□□□□□ -1.01
CLDN4-205ENST00000476494 ALDH1A1P00352 501 aa8.76□□□□□ -1.01
CLDN4-205ENST00000476494 MKRN3Q13064 507 aaKnown RBP8.76□□□□□ -1.01
CLDN4-205ENST00000476494 KIF4BQ2VIQ3 1234 aa8.76□□□□□ -1.01
CLDN4-205ENST00000476494 NBPF10Q6P3W6 841 aaKnown RBP8.76□□□□□ -1.01
CLDN4-205ENST00000476494 SUPT20HQ8NEM7 779 aa8.76□□□□□ -1.01
CLDN4-205ENST00000476494 STAP2Q9UGK3 403 aa8.76□□□□□ -1.01
CLDN4-205ENST00000476494 ZNF652Q9Y2D9 606 aa8.76□□□□□ -1.01
CLDN4-205ENST00000476494 PTCH2Q9Y6C5 1203 aa8.76□□□□□ -1.01
CLDN4-205ENST00000476494 RPS12P25398 132 aaKnown RBP8.75□□□□□ -1.01
CLDN4-205ENST00000476494 BMP8BP34820 402 aa8.75□□□□□ -1.01
CLDN4-205ENST00000476494 TNNT2P45379 298 aaPredicted RBP8.75□□□□□ -1.01
CLDN4-205ENST00000476494 PTPN12Q05209 780 aaKnown RBP8.75□□□□□ -1.01
CLDN4-205ENST00000476494 SLC4A8Q2Y0W8 1093 aa8.75□□□□□ -1.01
CLDN4-205ENST00000476494 LRIT3Q3SXY7 679 aa8.75□□□□□ -1.01
CLDN4-205ENST00000476494 LDLRAD1Q5T700 205 aa8.75□□□□□ -1.01
CLDN4-205ENST00000476494 SPRYD7Q5W111 196 aa8.75□□□□□ -1.01
CLDN4-205ENST00000476494 RPGRQ92834 1020 aaKnown RBP8.75□□□□□ -1.01
CLDN4-205ENST00000476494 GDF15Q99988 308 aa8.75□□□□□ -1.01
CLDN4-205ENST00000476494 NUP98P52948 1817 aa8.75□□□□□ -1.01
CLDN4-205ENST00000476494 KCNQ3O43525 872 aa8.74□□□□□ -1.01
CLDN4-205ENST00000476494 HSPA5P11021 654 aaKnown RBP8.74□□□□□ -1.01
CLDN4-205ENST00000476494 IL13P35225 146 aa8.74□□□□□ -1.01
CLDN4-205ENST00000476494 SLC9C1Q4G0N8 1177 aa8.74□□□□□ -1.01
CLDN4-205ENST00000476494 ANGEL2Q5VTE6 544 aaKnown RBP8.74□□□□□ -1.01
CLDN4-205ENST00000476494 PRAMEF18Q5VWM3 479 aa8.74□□□□□ -1.01
CLDN4-205ENST00000476494 NBPF11Q86T75 865 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms