RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, human

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR3-208	ENST00000474426	CHMP5	Q9NZZ3	219 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	EVL	Q9UI08	416 aa	Predicted RBP	4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	EID1	Q9Y6B2	187 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426		A0A0B4J203	849 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	CCDC66	A2RUB6	948 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	FAM25E	A8MYX2	175 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	SLC26A4	O43511	780 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	SGTA	O43765	313 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	MYO1B	O43795	1136 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	PSMA3	P25788	255 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	OAS2	P29728	719 aa	Known RBP	4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	TSGA10IP	Q3SY00	556 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	SPECC1	Q5M775	1068 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	LLGL2	Q6P1M3	1020 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	FIP1L1	Q6UN15	594 aa	Known RBP	4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	GIMAP8	Q8ND71	665 aa	Predicted RBP	4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	TBC1D31	Q96DN5	1066 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	PAWR	Q96IZ0	340 aa	Known RBP	4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	UNC45A	Q9H3U1	944 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	BARX2	Q9UMQ3	279 aa	Predicted RBP	4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	BPNT1	O95861	308 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	PRPF4B	Q13523	1007 aa	Known RBP	4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	RAPGEF1	Q13905	1077 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	BRSK2	Q8IWQ3	736 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	PAF1	Q8N7H5	531 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	ZNF713	Q8N859	430 aa	Predicted RBP	4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	LILRB1	Q8NHL6	650 aa	Predicted RBP	4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	USP33	Q8TEY7	942 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	SLC39A3	Q9BRY0	314 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	RSPH14	Q9UHP6	348 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	HSD3B2	P26439	372 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	EIF2B5	Q13144	721 aa	Known RBP	4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	TRIM29	Q14134	588 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	SLC10A5	Q5PT55	438 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	TTC19	Q6DKK2	380 aa	Predicted RBP	4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	FBXO33	Q7Z6M2	555 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	C11orf74	Q86VG3	221 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	RBM12B	Q8IXT5	1001 aa	Known RBP	4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	IPCEF1	Q8WWN9	437 aa	Predicted RBP	4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	PLEKHG4B	Q96PX9	1271 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	GSDMA	Q96QA5	445 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426		V9GYY5	206 aa	Predicted RBP	4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	PRDM2	Q13029	1718 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	SMARCA2	P51531	1590 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	CCDC163	A0A0D9SF12	145 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	HSPA5	P11021	654 aa	Known RBP	4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	PDE4B	Q07343	736 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	TRAF1	Q13077	416 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	MCTP2	Q6DN12	878 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	CCSAP	Q6IQ19	270 aa	Predicted RBP	4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	MILR1	Q7Z6M3	343 aa		4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	RRP15	Q9Y3B9	282 aa	Known RBP	4.11	□□□□□ -1.75
UBR3-208	ENST00000474426	MRPS23	Q9Y3D9	190 aa	Known RBP	4.11	□□□□□ -1.75
UBR3-208	ENST00000474426		A6NCN8	305 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	CDKL5	O76039	1030 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	INMT	O95050	263 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	ADD2	P35612	726 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	HSD17B7	P56937	341 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	PAK2	Q13177	524 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	PDIA5	Q14554	519 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	MYBPC3	Q14896	1274 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	VPS72	Q15906	364 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	SLC5A9	Q2M3M2	681 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	RNF187	Q5TA31	235 aa	Predicted RBP	4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	ERAP2	Q6P179	960 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	PLBD1	Q6P4A8	553 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	TMEM110	Q86TL2	294 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	VPS52	Q8N1B4	723 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	FLCN	Q8NFG4	579 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	BICD1	Q96G01	975 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	BAG1	Q99933	345 aa	Predicted RBP	4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	FAM167B	Q9BTA0	163 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	GPCPD1	Q9NPB8	672 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	RIC8A	Q9NPQ8	531 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	TFIP11	Q9UBB9	837 aa	Known RBP	4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	GTPBP10	A4D1E9	387 aa	Known RBP	4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	TMCO5B	A8MYB1	307 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	EIF3F	O00303	357 aa	Predicted RBP	4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	TRAPPC10	P48553	1259 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	MARS	P56192	900 aa	Known RBP	4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	SESN3	P58005	492 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	UBXN2A	P68543	259 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	EIF4A2	Q14240	407 aa	Known RBP	4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	GPIHBP1	Q8IV16	184 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	WDR75	Q8IWA0	830 aa	Known RBP	4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	ANKK1	Q8NFD2	765 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	PPM1E	Q8WY54	764 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	SYAP1	Q96A49	352 aa	Predicted RBP	4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	ARNT2	Q9HBZ2	717 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	SNRK	Q9NRH2	765 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	SPATA7	Q9P0W8	599 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	SEL1L	Q9UBV2	794 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	SLC30A1	Q9Y6M5	507 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	MORC2	Q9Y6X9	1032 aa	Predicted RBP	4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	ERBB4	Q15303	1308 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	LINC00854	A0A1B0GVQ3	168 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	TNNT3	P45378	269 aa	Predicted RBP	4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	EIF4G1	Q04637	1599 aa	Known RBP	4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	COX10	Q12887	443 aa		4.1	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms