RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 DDNO94850 711 aaPredicted RBP19.29■□□□□ 0.68
LIMS1-212ENST00000474038 CWF19L2Q2TBE0 894 aaKnown RBP19.29■□□□□ 0.68
LIMS1-212ENST00000474038 ZBTB38Q8NAP3 1195 aaPredicted RBP19.29■□□□□ 0.68
LIMS1-212ENST00000474038 NEURL1BA8MQ27 555 aa19.28■□□□□ 0.68
LIMS1-212ENST00000474038 PCCAP05165 728 aaPredicted RBP19.28■□□□□ 0.68
LIMS1-212ENST00000474038 CT47B1P0C2W7 299 aaPredicted RBP19.28■□□□□ 0.68
LIMS1-212ENST00000474038 ABCC4O15439 1325 aa19.27■□□□□ 0.68
LIMS1-212ENST00000474038 ZBED9Q6R2W3 1325 aa19.27■□□□□ 0.68
LIMS1-212ENST00000474038 F6X3S4 739 aa19.27■□□□□ 0.68
LIMS1-212ENST00000474038 IRS4O14654 1257 aaPredicted RBP19.27■□□□□ 0.68
LIMS1-212ENST00000474038 IARSP41252 1262 aaKnown RBP19.27■□□□□ 0.68
LIMS1-212ENST00000474038 FSTL1Q12841 308 aa19.27■□□□□ 0.68
LIMS1-212ENST00000474038 ALDH1L2Q3SY69 923 aa19.27■□□□□ 0.68
LIMS1-212ENST00000474038 JARID2Q92833 1246 aaPredicted RBP19.27■□□□□ 0.68
LIMS1-212ENST00000474038 APLP1P51693 650 aa19.26■□□□□ 0.67
LIMS1-212ENST00000474038 CC2D2BQ6DHV5 1058 aa19.26■□□□□ 0.67
LIMS1-212ENST00000474038 LINS1Q8NG48 757 aa19.26■□□□□ 0.67
LIMS1-212ENST00000474038 PSMD1Q99460 953 aa19.26■□□□□ 0.67
LIMS1-212ENST00000474038 BCL2L13Q9BXK5 485 aa19.26■□□□□ 0.67
LIMS1-212ENST00000474038 ZNF541Q9H0D2 1346 aa19.25■□□□□ 0.67
LIMS1-212ENST00000474038 SMC1BQ8NDV3 1235 aa19.25■□□□□ 0.67
LIMS1-212ENST00000474038 GCKRQ14397 625 aa19.24■□□□□ 0.67
LIMS1-212ENST00000474038 CDHR2Q9BYE9 1310 aa19.24■□□□□ 0.67
LIMS1-212ENST00000474038 COL4A5P29400 1685 aa19.24■□□□□ 0.67
LIMS1-212ENST00000474038 HTRA3P83110 453 aa19.23■□□□□ 0.67
LIMS1-212ENST00000474038 SF3B3Q15393 1217 aaKnown RBP19.23■□□□□ 0.67
LIMS1-212ENST00000474038 BEND3Q5T5X7 828 aa19.23■□□□□ 0.67
LIMS1-212ENST00000474038 SMC4Q9NTJ3 1288 aa19.23■□□□□ 0.67
LIMS1-212ENST00000474038 H7C1W4 665 aa19.22■□□□□ 0.67
LIMS1-212ENST00000474038 HSP90B1P14625 803 aaKnown RBP19.22■□□□□ 0.67
LIMS1-212ENST00000474038 ATP6V0A2Q9Y487 856 aa19.22■□□□□ 0.67
LIMS1-212ENST00000474038 PTPRCP08575 1304 aa19.22■□□□□ 0.67
LIMS1-212ENST00000474038 COL4A1P02462 1669 aa19.21■□□□□ 0.67
LIMS1-212ENST00000474038 FZD9O00144 591 aa19.21■□□□□ 0.67
LIMS1-212ENST00000474038 PDE8AO60658 829 aa19.21■□□□□ 0.67
LIMS1-212ENST00000474038 RARSP54136 660 aaKnown RBP19.21■□□□□ 0.67
LIMS1-212ENST00000474038 DDX46Q7L014 1031 aaKnown RBP19.21■□□□□ 0.67
LIMS1-212ENST00000474038 UBE3BQ7Z3V4 1068 aa19.21■□□□□ 0.67
LIMS1-212ENST00000474038 POTEIP0CG38 1075 aa19.2■□□□□ 0.66
LIMS1-212ENST00000474038 POTEJP0CG39 1038 aa19.2■□□□□ 0.66
LIMS1-212ENST00000474038 GRAPQ13588 217 aa19.2■□□□□ 0.66
LIMS1-212ENST00000474038 GRIPAP1Q4V328 841 aa19.2■□□□□ 0.66
LIMS1-212ENST00000474038 SLC4A10Q6U841 1118 aa19.2■□□□□ 0.66
LIMS1-212ENST00000474038 GRAPLQ8TC17 118 aaPredicted RBP19.2■□□□□ 0.66
LIMS1-212ENST00000474038 JDP2Q8WYK2 163 aa19.2■□□□□ 0.66
LIMS1-212ENST00000474038 L3MBTL3Q96JM7 780 aaPredicted RBP19.2■□□□□ 0.66
LIMS1-212ENST00000474038 SPEF2Q9C093 1822 aa19.2■□□□□ 0.66
LIMS1-212ENST00000474038 LRRC37AA6NMS7 1700 aa19.2■□□□□ 0.66
LIMS1-212ENST00000474038 BBOX1O75936 387 aa19.19■□□□□ 0.66
LIMS1-212ENST00000474038 BRPF1P55201 1214 aaPredicted RBP19.19■□□□□ 0.66
LIMS1-212ENST00000474038 CASP7P55210 303 aa19.19■□□□□ 0.66
LIMS1-212ENST00000474038 LARGE2Q8N3Y3 721 aa19.19■□□□□ 0.66
LIMS1-212ENST00000474038 TMX4Q9H1E5 349 aaPredicted RBP19.19■□□□□ 0.66
LIMS1-212ENST00000474038 ALDH1L1O75891 902 aa19.18■□□□□ 0.66
LIMS1-212ENST00000474038 SP8Q8IXZ3 490 aa19.18■□□□□ 0.66
LIMS1-212ENST00000474038 DNAJC5GQ8N7S2 189 aa19.18■□□□□ 0.66
LIMS1-212ENST00000474038 SRCIN1Q9C0H9 1055 aa19.18■□□□□ 0.66
LIMS1-212ENST00000474038 SCN4AP35499 1836 aa19.18■□□□□ 0.66
LIMS1-212ENST00000474038 IQCA1LA6NCM1 817 aa19.17■□□□□ 0.66
LIMS1-212ENST00000474038 PPIP5K2O43314 1243 aa19.17■□□□□ 0.66
LIMS1-212ENST00000474038 AOC3Q16853 763 aa19.17■□□□□ 0.66
LIMS1-212ENST00000474038 CELF1Q92879 486 aaKnown RBP19.17■□□□□ 0.66
LIMS1-212ENST00000474038 TAF1DQ9H5J8 278 aaPredicted RBP19.17■□□□□ 0.66
LIMS1-212ENST00000474038 NOB1Q9ULX3 412 aaKnown RBP19.17■□□□□ 0.66
LIMS1-212ENST00000474038 CTSWP56202 376 aa19.16■□□□□ 0.66
LIMS1-212ENST00000474038 EIF6P56537 245 aaKnown RBP19.16■□□□□ 0.66
LIMS1-212ENST00000474038 CCDC152Q4G0S7 254 aa19.16■□□□□ 0.66
LIMS1-212ENST00000474038 DPP8Q6V1X1 898 aaPredicted RBP19.16■□□□□ 0.66
LIMS1-212ENST00000474038 MPNDQ8N594 471 aa19.16■□□□□ 0.66
LIMS1-212ENST00000474038 CCDC85AQ96PX6 553 aaPredicted RBP19.16■□□□□ 0.66
LIMS1-212ENST00000474038 PLA2G12BQ9BX93 195 aa19.16■□□□□ 0.66
LIMS1-212ENST00000474038 SEC31BQ9NQW1 1179 aa19.16■□□□□ 0.66
LIMS1-212ENST00000474038 GJA3Q9Y6H8 435 aa19.16■□□□□ 0.66
LIMS1-212ENST00000474038 GRM8O00222 908 aa19.15■□□□□ 0.66
LIMS1-212ENST00000474038 CHADLQ6NUI6 762 aa19.15■□□□□ 0.66
LIMS1-212ENST00000474038 NIM1KQ8IY84 436 aa19.15■□□□□ 0.66
LIMS1-212ENST00000474038 GPC2Q8N158 579 aa19.15■□□□□ 0.66
LIMS1-212ENST00000474038 TTLL11Q8NHH1 800 aa19.15■□□□□ 0.66
LIMS1-212ENST00000474038 RTFDC1Q9BY42 306 aaPredicted RBP19.15■□□□□ 0.66
LIMS1-212ENST00000474038 HACL1Q9UJ83 578 aa19.15■□□□□ 0.66
LIMS1-212ENST00000474038 TMC4Q7Z404 712 aa19.14■□□□□ 0.65
LIMS1-212ENST00000474038 SUPT20HQ8NEM7 779 aa19.14■□□□□ 0.65
LIMS1-212ENST00000474038 DUOX1Q9NRD9 1551 aa19.14■□□□□ 0.65
LIMS1-212ENST00000474038 BCAR3O75815 825 aa19.13■□□□□ 0.65
LIMS1-212ENST00000474038 EPHX2P34913 555 aa19.13■□□□□ 0.65
LIMS1-212ENST00000474038 RPS8P62241 208 aaKnown RBP19.13■□□□□ 0.65
LIMS1-212ENST00000474038 EAPPQ56P03 285 aaPredicted RBP19.13■□□□□ 0.65
LIMS1-212ENST00000474038 C9orf78Q9NZ63 289 aaPredicted RBP19.13■□□□□ 0.65
LIMS1-212ENST00000474038 KIF16BQ96L93 1317 aa19.13■□□□□ 0.65
LIMS1-212ENST00000474038 LTBP1Q14766 1721 aa19.12■□□□□ 0.65
LIMS1-212ENST00000474038 RTL9Q8NET4 1388 aa19.12■□□□□ 0.65
LIMS1-212ENST00000474038 LDHDQ86WU2 507 aa19.12■□□□□ 0.65
LIMS1-212ENST00000474038 API5Q9BZZ5 524 aaKnown RBP19.12■□□□□ 0.65
LIMS1-212ENST00000474038 GREM2Q9H772 168 aa19.12■□□□□ 0.65
LIMS1-212ENST00000474038 UTYO14607 1347 aa19.11■□□□□ 0.65
LIMS1-212ENST00000474038 CSF1RP07333 972 aa19.11■□□□□ 0.65
LIMS1-212ENST00000474038 FOXO4P98177 505 aa19.11■□□□□ 0.65
LIMS1-212ENST00000474038 ARHGAP45Q92619 1136 aa19.11■□□□□ 0.65
LIMS1-212ENST00000474038 KLRG1Q96E93 195 aa19.11■□□□□ 0.65
LIMS1-212ENST00000474038 VPS33BQ9H267 617 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms