RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 NUDT8Q8WV74 236 aa6.62□□□□□ -1.35
SCN1A-205ENST00000473295 SERPINA10Q9UK55 444 aa6.62□□□□□ -1.35
SCN1A-205ENST00000473295 LRFN2Q9ULH4 789 aa6.62□□□□□ -1.35
SCN1A-205ENST00000473295 ZMIZ1Q9ULJ6 1067 aa6.62□□□□□ -1.35
SCN1A-205ENST00000473295 A0A0A0MRY4 1105 aa6.61□□□□□ -1.35
SCN1A-205ENST00000473295 FAM229AH3BQW9 127 aa6.61□□□□□ -1.35
SCN1A-205ENST00000473295 PRMT3O60678 531 aa6.61□□□□□ -1.35
SCN1A-205ENST00000473295 GRNP28799 593 aaKnown RBP6.61□□□□□ -1.35
SCN1A-205ENST00000473295 AFF1P51825 1210 aaKnown RBP6.61□□□□□ -1.35
SCN1A-205ENST00000473295 OCLNQ16625 522 aa6.61□□□□□ -1.35
SCN1A-205ENST00000473295 COX20Q5RI15 118 aa6.61□□□□□ -1.35
SCN1A-205ENST00000473295 C16orf46Q6P387 395 aa6.61□□□□□ -1.35
SCN1A-205ENST00000473295 KRT25Q7Z3Z0 450 aa6.61□□□□□ -1.35
SCN1A-205ENST00000473295 DTWD1Q8N5C7 304 aa6.61□□□□□ -1.35
SCN1A-205ENST00000473295 TTC9Q92623 222 aa6.61□□□□□ -1.35
SCN1A-205ENST00000473295 PRIMPOLQ96LW4 560 aa6.61□□□□□ -1.35
SCN1A-205ENST00000473295 RTCBQ9Y3I0 505 aaKnown RBP6.61□□□□□ -1.35
SCN1A-205ENST00000473295 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-205ENST00000473295 SASH3O75995 380 aa6.6□□□□□ -1.35
SCN1A-205ENST00000473295 CPB1P15086 417 aa6.6□□□□□ -1.35
SCN1A-205ENST00000473295 TARSP26639 723 aaKnown RBP6.6□□□□□ -1.35
SCN1A-205ENST00000473295 NRLP54845 237 aa6.6□□□□□ -1.35
SCN1A-205ENST00000473295 SRPK2P78362 688 aaKnown RBP6.6□□□□□ -1.35
SCN1A-205ENST00000473295 DOC2BQ14184 412 aa6.6□□□□□ -1.35
SCN1A-205ENST00000473295 MSL1Q68DK7 614 aa6.6□□□□□ -1.35
SCN1A-205ENST00000473295 ELMSAN1Q6PJG2 1045 aa6.6□□□□□ -1.35
SCN1A-205ENST00000473295 CMTR1Q8N1G2 835 aaKnown RBP6.6□□□□□ -1.35
SCN1A-205ENST00000473295 PBXIP1Q96AQ6 731 aa6.6□□□□□ -1.35
SCN1A-205ENST00000473295 CXXC1Q9P0U4 656 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-205ENST00000473295 NAGPAQ9UK23 515 aa6.6□□□□□ -1.35
SCN1A-205ENST00000473295 OPLAHO14841 1288 aa6.59□□□□□ -1.35
SCN1A-205ENST00000473295 XYLBO75191 536 aa6.59□□□□□ -1.35
SCN1A-205ENST00000473295 PSAPP07602 524 aa6.59□□□□□ -1.35
SCN1A-205ENST00000473295 FAM69CQ0P6D2 419 aa6.59□□□□□ -1.35
SCN1A-205ENST00000473295 GRIK4Q16099 956 aa6.59□□□□□ -1.35
SCN1A-205ENST00000473295 RGL4Q8IZJ4 473 aa6.59□□□□□ -1.35
SCN1A-205ENST00000473295 FMR1NBQ8N0W7 255 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-205ENST00000473295 STK32AQ8WU08 396 aa6.59□□□□□ -1.35
SCN1A-205ENST00000473295 CLP1Q92989 425 aaKnown RBP6.59□□□□□ -1.35
SCN1A-205ENST00000473295 LENG1Q96BZ8 264 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-205ENST00000473295 LPIN3Q9BQK8 851 aa6.59□□□□□ -1.35
SCN1A-205ENST00000473295 RBSNQ9H1K0 784 aa6.59□□□□□ -1.35
SCN1A-205ENST00000473295 TLR7Q9NYK1 1049 aaKnown RBP6.59□□□□□ -1.35
SCN1A-205ENST00000473295 ZFATQ9P243 1243 aa6.59□□□□□ -1.35
SCN1A-205ENST00000473295 SOX18P35713 384 aa6.58□□□□□ -1.36
SCN1A-205ENST00000473295 PLAURQ03405 335 aa6.58□□□□□ -1.36
SCN1A-205ENST00000473295 ADGRE1Q14246 886 aa6.58□□□□□ -1.36
SCN1A-205ENST00000473295 PERM1Q5SV97 790 aa6.58□□□□□ -1.36
SCN1A-205ENST00000473295 WFDC8Q8IUA0 241 aa6.58□□□□□ -1.36
SCN1A-205ENST00000473295 ZBTB42B2RXF5 422 aa6.57□□□□□ -1.36
SCN1A-205ENST00000473295 TMEM164Q5U3C3 297 aa6.57□□□□□ -1.36
SCN1A-205ENST00000473295 TXNRD3Q86VQ6 643 aa6.57□□□□□ -1.36
SCN1A-205ENST00000473295 DMRTC2Q8IXT2 367 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-205ENST00000473295 ABTB2Q8N961 1025 aa6.57□□□□□ -1.36
SCN1A-205ENST00000473295 DCAF11Q8TEB1 546 aa6.57□□□□□ -1.36
SCN1A-205ENST00000473295 PIK3R5Q8WYR1 880 aa6.57□□□□□ -1.36
SCN1A-205ENST00000473295 SEMA6BQ9H3T3 888 aa6.57□□□□□ -1.36
SCN1A-205ENST00000473295 FNDC3AQ9Y2H6 1198 aaKnown RBP6.57□□□□□ -1.36
SCN1A-205ENST00000473295 KCNMB2Q9Y691 235 aa6.57□□□□□ -1.36
SCN1A-205ENST00000473295 GHRHP01286 108 aa6.56□□□□□ -1.36
SCN1A-205ENST00000473295 HOXD8P13378 290 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-205ENST00000473295 SELPP16109 830 aa6.56□□□□□ -1.36
SCN1A-205ENST00000473295 EIF2AK2P19525 551 aaKnown RBP6.56□□□□□ -1.36
SCN1A-205ENST00000473295 MBTPS1Q14703 1052 aa6.56□□□□□ -1.36
SCN1A-205ENST00000473295 RSPO4Q2I0M5 234 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-205ENST00000473295 ILDR2Q71H61 639 aa6.56□□□□□ -1.36
SCN1A-205ENST00000473295 NLRP13Q86W25 1043 aa6.56□□□□□ -1.36
SCN1A-205ENST00000473295 ETFBKMTQ8IXQ9 262 aa6.56□□□□□ -1.36
SCN1A-205ENST00000473295 CACTIN-AS1Q8N1I8 211 aa6.56□□□□□ -1.36
SCN1A-205ENST00000473295 TPSG1Q9NRR2 321 aa6.56□□□□□ -1.36
SCN1A-205ENST00000473295 LOC102724428A0A0B4J2F2 783 aa6.55□□□□□ -1.36
SCN1A-205ENST00000473295 SIK1P57059 783 aa6.55□□□□□ -1.36
SCN1A-205ENST00000473295 MLLT1Q03111 559 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-205ENST00000473295 GRIK5Q16478 980 aa6.55□□□□□ -1.36
SCN1A-205ENST00000473295 NKAPLQ5M9Q1 402 aa6.55□□□□□ -1.36
SCN1A-205ENST00000473295 MKNK1Q9BUB5 465 aa6.55□□□□□ -1.36
SCN1A-205ENST00000473295 SAP130Q9H0E3 1048 aa6.55□□□□□ -1.36
SCN1A-205ENST00000473295 SMG9Q9H0W8 520 aaKnown RBP6.55□□□□□ -1.36
SCN1A-205ENST00000473295 USP21Q9UK80 565 aa6.55□□□□□ -1.36
SCN1A-205ENST00000473295 USP20Q9Y2K6 914 aa6.55□□□□□ -1.36
SCN1A-205ENST00000473295 MMP20O60882 483 aa6.54□□□□□ -1.36
SCN1A-205ENST00000473295 FBXO11Q86XK2 927 aa6.54□□□□□ -1.36
SCN1A-205ENST00000473295 PLD4Q96BZ4 506 aa6.54□□□□□ -1.36
SCN1A-205ENST00000473295 SRA1Q9HD15 236 aaKnown RBP6.54□□□□□ -1.36
SCN1A-205ENST00000473295 STIM2Q9P246 746 aa6.54□□□□□ -1.36
SCN1A-205ENST00000473295 UBAP1LF5GYI3 381 aa6.53□□□□□ -1.36
SCN1A-205ENST00000473295 DYRK3O43781 588 aa6.53□□□□□ -1.36
SCN1A-205ENST00000473295 H2AFB1P0C5Y9 115 aa6.53□□□□□ -1.36
SCN1A-205ENST00000473295 H2AFB2P0C5Z0 115 aa6.53□□□□□ -1.36
SCN1A-205ENST00000473295 ZAP70P43403 619 aa6.53□□□□□ -1.36
SCN1A-205ENST00000473295 IGF2-ASQ6U949 168 aa6.53□□□□□ -1.36
SCN1A-205ENST00000473295 HFE2Q6ZVN8 426 aa6.53□□□□□ -1.36
SCN1A-205ENST00000473295 TNFRSF10BO14763 440 aa6.52□□□□□ -1.37
SCN1A-205ENST00000473295 RPLP1P05386 114 aaKnown RBP6.52□□□□□ -1.37
SCN1A-205ENST00000473295 ATP2B4P23634 1241 aa6.52□□□□□ -1.37
SCN1A-205ENST00000473295 NAA30Q147X3 362 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-205ENST00000473295 SHISA2Q6UWI4 295 aa6.52□□□□□ -1.37
SCN1A-205ENST00000473295 MAP4K3Q8IVH8 894 aa6.52□□□□□ -1.37
SCN1A-205ENST00000473295 SPACA7Q96KW9 195 aa6.52□□□□□ -1.37
SCN1A-205ENST00000473295 MUC3BQ9H195 1237 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms