RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 ARFGEF2Q9Y6D5 1785 aa15.32■□□□□ 0.04
SYNE1-221ENST00000472563 SBF1O95248 1867 aa15.32■□□□□ 0.04
SYNE1-221ENST00000472563 FER1L6Q2WGJ9 1857 aa15.32■□□□□ 0.04
SYNE1-221ENST00000472563 CCER2I3L3R5 266 aa15.32■□□□□ 0.04
SYNE1-221ENST00000472563 DPP8Q6V1X1 898 aaPredicted RBP15.32■□□□□ 0.04
SYNE1-221ENST00000472563 LARGE2Q8N3Y3 721 aa15.32■□□□□ 0.04
SYNE1-221ENST00000472563 MPNDQ8N594 471 aa15.32■□□□□ 0.04
SYNE1-221ENST00000472563 ZNF541Q9H0D2 1346 aa15.32■□□□□ 0.04
SYNE1-221ENST00000472563 CEP350Q5VT06 3117 aa15.32■□□□□ 0.04
SYNE1-221ENST00000472563 IQCA1LA6NCM1 817 aa15.31■□□□□ 0.04
SYNE1-221ENST00000472563 PDE8AO60658 829 aa15.31■□□□□ 0.04
SYNE1-221ENST00000472563 APLP1P51693 650 aa15.31■□□□□ 0.04
SYNE1-221ENST00000472563 CELF1Q92879 486 aaKnown RBP15.31■□□□□ 0.04
SYNE1-221ENST00000472563 NEURL1BA8MQ27 555 aa15.3■□□□□ 0.04
SYNE1-221ENST00000472563 PPIP5K2O43314 1243 aa15.3■□□□□ 0.04
SYNE1-221ENST00000472563 RPS8P62241 208 aaKnown RBP15.3■□□□□ 0.04
SYNE1-221ENST00000472563 FKBP5Q13451 457 aaPredicted RBP15.3■□□□□ 0.04
SYNE1-221ENST00000472563 GPC2Q8N158 579 aa15.3■□□□□ 0.04
SYNE1-221ENST00000472563 CDHR2Q9BYE9 1310 aa15.3■□□□□ 0.04
SYNE1-221ENST00000472563 EIF6P56537 245 aaKnown RBP15.29■□□□□ 0.04
SYNE1-221ENST00000472563 CWF19L2Q2TBE0 894 aaKnown RBP15.29■□□□□ 0.04
SYNE1-221ENST00000472563 CCDC152Q4G0S7 254 aa15.29■□□□□ 0.04
SYNE1-221ENST00000472563 NIM1KQ8IY84 436 aa15.29■□□□□ 0.04
SYNE1-221ENST00000472563 JARID2Q92833 1246 aaPredicted RBP15.29■□□□□ 0.04
SYNE1-221ENST00000472563 H7C1W4 665 aa15.28■□□□□ 0.04
SYNE1-221ENST00000472563 KIAA2012Q0VF49 1180 aa15.28■□□□□ 0.04
SYNE1-221ENST00000472563 GCKRQ14397 625 aa15.28■□□□□ 0.04
SYNE1-221ENST00000472563 AOC3Q16853 763 aa15.28■□□□□ 0.04
SYNE1-221ENST00000472563 LINS1Q8NG48 757 aa15.28■□□□□ 0.04
SYNE1-221ENST00000472563 DNAAF4Q8WXU2 420 aa15.28■□□□□ 0.04
SYNE1-221ENST00000472563 TAF1DQ9H5J8 278 aaPredicted RBP15.28■□□□□ 0.04
SYNE1-221ENST00000472563 ANKRD36CQ5JPF3 1778 aa15.27■□□□□ 0.04
SYNE1-221ENST00000472563 E9PSI1 815 aa15.27■□□□□ 0.04
SYNE1-221ENST00000472563 SEC31BQ9NQW1 1179 aa15.27■□□□□ 0.04
SYNE1-221ENST00000472563 HACL1Q9UJ83 578 aa15.27■□□□□ 0.04
SYNE1-221ENST00000472563 ZNRF3Q9ULT6 936 aa15.27■□□□□ 0.04
SYNE1-221ENST00000472563 TIAM2Q8IVF5 1701 aa15.26■□□□□ 0.03
SYNE1-221ENST00000472563 WDR90Q96KV7 1748 aa15.26■□□□□ 0.03
SYNE1-221ENST00000472563 CHADLQ6NUI6 762 aa15.26■□□□□ 0.03
SYNE1-221ENST00000472563 NSFL1CQ9UNZ2 370 aaKnown RBP15.26■□□□□ 0.03
SYNE1-221ENST00000472563 COL4A5P29400 1685 aa15.25■□□□□ 0.03
SYNE1-221ENST00000472563 CTSWP56202 376 aa15.25■□□□□ 0.03
SYNE1-221ENST00000472563 GPSM2P81274 684 aa15.25■□□□□ 0.03
SYNE1-221ENST00000472563 UBE3BQ7Z3V4 1068 aa15.25■□□□□ 0.03
SYNE1-221ENST00000472563 TTLL11Q8NHH1 800 aa15.25■□□□□ 0.03
SYNE1-221ENST00000472563 GJA3Q9Y6H8 435 aa15.25■□□□□ 0.03
SYNE1-221ENST00000472563 POTEIP0CG38 1075 aa15.24■□□□□ 0.03
SYNE1-221ENST00000472563 POTEJP0CG39 1038 aa15.24■□□□□ 0.03
SYNE1-221ENST00000472563 EPHX2P34913 555 aa15.24■□□□□ 0.03
SYNE1-221ENST00000472563 CASP7P55210 303 aa15.24■□□□□ 0.03
SYNE1-221ENST00000472563 CXCL9Q07325 125 aa15.24■□□□□ 0.03
SYNE1-221ENST00000472563 SLFN5Q08AF3 891 aa15.24■□□□□ 0.03
SYNE1-221ENST00000472563 PNMA8AQ86V59 439 aaPredicted RBP15.24■□□□□ 0.03
SYNE1-221ENST00000472563 LDHDQ86WU2 507 aa15.24■□□□□ 0.03
SYNE1-221ENST00000472563 CCDC85AQ96PX6 553 aaPredicted RBP15.24■□□□□ 0.03
SYNE1-221ENST00000472563 PLA2G12BQ9BX93 195 aa15.24■□□□□ 0.03
SYNE1-221ENST00000472563 PODXL2Q9NZ53 605 aa15.24■□□□□ 0.03
SYNE1-221ENST00000472563 POLLQ9UGP5 575 aa15.24■□□□□ 0.03
SYNE1-221ENST00000472563 WASHC4Q2M389 1173 aa15.23■□□□□ 0.03
SYNE1-221ENST00000472563 BEND3Q5T5X7 828 aa15.23■□□□□ 0.03
SYNE1-221ENST00000472563 ANKRD18AQ8IVF6 992 aa15.23■□□□□ 0.03
SYNE1-221ENST00000472563 DNAJC5GQ8N7S2 189 aa15.23■□□□□ 0.03
SYNE1-221ENST00000472563 TBC1D16Q8TBP0 767 aa15.23■□□□□ 0.03
SYNE1-221ENST00000472563 CDC5LQ99459 802 aaKnown RBP15.23■□□□□ 0.03
SYNE1-221ENST00000472563 EYA3Q99504 573 aa15.23■□□□□ 0.03
SYNE1-221ENST00000472563 RTL9Q8NET4 1388 aa15.23■□□□□ 0.03
SYNE1-221ENST00000472563 F6X3S4 739 aa15.22■□□□□ 0.03
SYNE1-221ENST00000472563 C6orf229H3BNL8 230 aa15.22■□□□□ 0.03
SYNE1-221ENST00000472563 LMOD1P29536 600 aaPredicted RBP15.22■□□□□ 0.03
SYNE1-221ENST00000472563 SCNN1DP51172 638 aa15.22■□□□□ 0.03
SYNE1-221ENST00000472563 TNIP1Q15025 636 aa15.22■□□□□ 0.03
SYNE1-221ENST00000472563 CSF1RP07333 972 aa15.21■□□□□ 0.03
SYNE1-221ENST00000472563 EAPPQ56P03 285 aaPredicted RBP15.21■□□□□ 0.03
SYNE1-221ENST00000472563 CIAPIN1Q6FI81 312 aa15.21■□□□□ 0.03
SYNE1-221ENST00000472563 TRMT2AQ8IZ69 625 aaKnown RBP15.21■□□□□ 0.03
SYNE1-221ENST00000472563 GREM2Q9H772 168 aa15.21■□□□□ 0.03
SYNE1-221ENST00000472563 BSDC1Q9NW68 430 aaPredicted RBP15.21■□□□□ 0.03
SYNE1-221ENST00000472563 ANKIB1Q9P2G1 1089 aa15.21■□□□□ 0.03
SYNE1-221ENST00000472563 DICER1Q9UPY3 1922 aaKnown RBP15.21■□□□□ 0.02
SYNE1-221ENST00000472563 CACNA1SQ13698 1873 aa15.2■□□□□ 0.02
SYNE1-221ENST00000472563 YDJCA8MPS7 323 aa15.2■□□□□ 0.02
SYNE1-221ENST00000472563 EPS15P42566 896 aa15.2■□□□□ 0.02
SYNE1-221ENST00000472563 MRPL50Q8N5N7 158 aaKnown RBP15.2■□□□□ 0.02
SYNE1-221ENST00000472563 CDCA7LQ96GN5 454 aa15.2■□□□□ 0.02
SYNE1-221ENST00000472563 ZC3H12CQ9C0D7 883 aaKnown RBP15.2■□□□□ 0.02
SYNE1-221ENST00000472563 GPRC5DQ9NZD1 345 aa15.2■□□□□ 0.02
SYNE1-221ENST00000472563 GGA1Q9UJY5 639 aa15.2■□□□□ 0.02
SYNE1-221ENST00000472563 DDX60Q8IY21 1712 aaKnown RBP15.2■□□□□ 0.02
SYNE1-221ENST00000472563 RIMBP2O15034 1052 aa15.19■□□□□ 0.02
SYNE1-221ENST00000472563 ALDH1L1O75891 902 aa15.19■□□□□ 0.02
SYNE1-221ENST00000472563 RAD17O75943 681 aa15.19■□□□□ 0.02
SYNE1-221ENST00000472563 UFL1O94874 794 aa15.19■□□□□ 0.02
SYNE1-221ENST00000472563 GMPSP49915 693 aaPredicted RBP15.19■□□□□ 0.02
SYNE1-221ENST00000472563 HTRA3P83110 453 aa15.19■□□□□ 0.02
SYNE1-221ENST00000472563 CLEC11AQ9Y240 323 aa15.19■□□□□ 0.02
SYNE1-221ENST00000472563 DUOX1Q9NRD9 1551 aa15.19■□□□□ 0.02
SYNE1-221ENST00000472563 XDHP47989 1333 aa15.18■□□□□ 0.02
SYNE1-221ENST00000472563 ITGBL1O95965 494 aaPredicted RBP15.18■□□□□ 0.02
SYNE1-221ENST00000472563 ATP2B4P23634 1241 aa15.18■□□□□ 0.02
SYNE1-221ENST00000472563 USP50Q70EL3 339 aaPredicted RBP15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms