RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 ATG9AQ7Z3C6 839 aa12.43□□□□□ -0.42
SF3A1-207ENST00000471342 RPAP2Q8IXW5 612 aaPredicted RBP12.43□□□□□ -0.42
SF3A1-207ENST00000471342 KLHDC4Q8TBB5 520 aa12.43□□□□□ -0.42
SF3A1-207ENST00000471342 MTFR1LQ9H019 292 aa12.43□□□□□ -0.42
SF3A1-207ENST00000471342 GREM2Q9H772 168 aa12.43□□□□□ -0.42
SF3A1-207ENST00000471342 C9orf78Q9NZ63 289 aaPredicted RBP12.43□□□□□ -0.42
SF3A1-207ENST00000471342 LRP5O75197 1615 aa12.43□□□□□ -0.42
SF3A1-207ENST00000471342 SNED1Q8TER0 1413 aa12.43□□□□□ -0.42
SF3A1-207ENST00000471342 HOXA10P31260 410 aaPredicted RBP12.42□□□□□ -0.42
SF3A1-207ENST00000471342 FAM161AQ3B820 660 aa12.42□□□□□ -0.42
SF3A1-207ENST00000471342 TPTE2Q6XPS3 522 aa12.42□□□□□ -0.42
SF3A1-207ENST00000471342 NBPF5PQ86XG9 351 aaPredicted RBP12.42□□□□□ -0.42
SF3A1-207ENST00000471342 SMC5Q8IY18 1101 aa12.42□□□□□ -0.42
SF3A1-207ENST00000471342 DCTPP1Q9H773 170 aa12.42□□□□□ -0.42
SF3A1-207ENST00000471342 COPRSQ9NQ92 184 aa12.42□□□□□ -0.42
SF3A1-207ENST00000471342 PA2G4Q9UQ80 394 aaKnown RBP12.42□□□□□ -0.42
SF3A1-207ENST00000471342 ATF5Q9Y2D1 282 aaPredicted RBP12.42□□□□□ -0.42
SF3A1-207ENST00000471342 WTIPA6NIX2 430 aaPredicted RBP12.41□□□□□ -0.42
SF3A1-207ENST00000471342 SASH1O94885 1247 aa12.41□□□□□ -0.42
SF3A1-207ENST00000471342 B4GALNT3Q6L9W6 998 aa12.41□□□□□ -0.42
SF3A1-207ENST00000471342 SKAP1Q86WV1 359 aa12.41□□□□□ -0.42
SF3A1-207ENST00000471342 PUS3Q9BZE2 481 aaKnown RBP12.41□□□□□ -0.42
SF3A1-207ENST00000471342 PPP4R2Q9NY27 417 aa12.41□□□□□ -0.42
SF3A1-207ENST00000471342 LAMB2P55268 1798 aa12.41□□□□□ -0.42
SF3A1-207ENST00000471342 IRS2Q9Y4H2 1338 aa12.4□□□□□ -0.42
SF3A1-207ENST00000471342 SRGNP10124 158 aa12.4□□□□□ -0.42
SF3A1-207ENST00000471342 C7orf43Q8WVR3 580 aa12.4□□□□□ -0.42
SF3A1-207ENST00000471342 CELF1Q92879 486 aaKnown RBP12.4□□□□□ -0.42
SF3A1-207ENST00000471342 ZNF594Q96JF6 807 aaPredicted RBP12.4□□□□□ -0.42
SF3A1-207ENST00000471342 BRIP1Q9BX63 1249 aa12.4□□□□□ -0.42
SF3A1-207ENST00000471342 RIPOR2Q9Y4F9 1068 aa12.4□□□□□ -0.42
SF3A1-207ENST00000471342 SALL3Q9BXA9 1300 aa12.39□□□□□ -0.43
SF3A1-207ENST00000471342 LRRC24Q50LG9 513 aa12.39□□□□□ -0.43
SF3A1-207ENST00000471342 VGLL2Q8N8G2 317 aa12.39□□□□□ -0.43
SF3A1-207ENST00000471342 CNBD1Q8NA66 436 aa12.39□□□□□ -0.43
SF3A1-207ENST00000471342 CCDC85AQ96PX6 553 aaPredicted RBP12.39□□□□□ -0.43
SF3A1-207ENST00000471342 NYXQ9GZU5 481 aa12.39□□□□□ -0.43
SF3A1-207ENST00000471342 COL11A2P13942 1736 aaPredicted RBP12.38□□□□□ -0.43
SF3A1-207ENST00000471342 SRGAP3O43295 1099 aa12.38□□□□□ -0.43
SF3A1-207ENST00000471342 PDE4AP27815 886 aa12.38□□□□□ -0.43
SF3A1-207ENST00000471342 NPM2Q86SE8 214 aaKnown RBP12.38□□□□□ -0.43
SF3A1-207ENST00000471342 KIF13BQ9NQT8 1826 aa12.38□□□□□ -0.43
SF3A1-207ENST00000471342 ITGA6P23229 1130 aa12.37□□□□□ -0.43
SF3A1-207ENST00000471342 PARP3Q9Y6F1 533 aa12.37□□□□□ -0.43
SF3A1-207ENST00000471342 CHRNA5P30532 468 aa12.36□□□□□ -0.43
SF3A1-207ENST00000471342 GOLGB1Q14789 3259 aaKnown RBP12.35□□□□□ -0.43
SF3A1-207ENST00000471342 SNAP23O00161 211 aa12.35□□□□□ -0.43
SF3A1-207ENST00000471342 FGFR2P21802 821 aa12.35□□□□□ -0.43
SF3A1-207ENST00000471342 C16orf71Q8IYS4 520 aaPredicted RBP12.35□□□□□ -0.43
SF3A1-207ENST00000471342 OTUD7AQ8TE49 926 aaPredicted RBP12.35□□□□□ -0.43
SF3A1-207ENST00000471342 NLRP3Q96P20 1036 aa12.35□□□□□ -0.43
SF3A1-207ENST00000471342 CRAMP1Q96RY5 1269 aa12.35□□□□□ -0.43
SF3A1-207ENST00000471342 CHMP4BQ9H444 224 aaKnown RBP12.35□□□□□ -0.43
SF3A1-207ENST00000471342 EXOC6BQ9Y2D4 811 aa12.35□□□□□ -0.43
SF3A1-207ENST00000471342 TAF1P21675 1872 aa12.35□□□□□ -0.43
SF3A1-207ENST00000471342 EYA2O00167 538 aa12.34□□□□□ -0.43
SF3A1-207ENST00000471342 CIAO1O76071 339 aa12.34□□□□□ -0.43
SF3A1-207ENST00000471342 DPEP1P16444 411 aa12.34□□□□□ -0.43
SF3A1-207ENST00000471342 NUCB1Q02818 461 aa12.34□□□□□ -0.43
SF3A1-207ENST00000471342 OLFM4Q6UX06 510 aa12.34□□□□□ -0.43
SF3A1-207ENST00000471342 SMARCA5O60264 1052 aaPredicted RBP12.33□□□□□ -0.44
SF3A1-207ENST00000471342 NEFLP07196 543 aa12.33□□□□□ -0.44
SF3A1-207ENST00000471342 GRAPQ13588 217 aa12.33□□□□□ -0.44
SF3A1-207ENST00000471342 CCDC152Q4G0S7 254 aa12.33□□□□□ -0.44
SF3A1-207ENST00000471342 NLGN2Q8NFZ4 835 aa12.33□□□□□ -0.44
SF3A1-207ENST00000471342 GRAPLQ8TC17 118 aaPredicted RBP12.33□□□□□ -0.44
SF3A1-207ENST00000471342 BSDC1Q9NW68 430 aaPredicted RBP12.33□□□□□ -0.44
SF3A1-207ENST00000471342 MINPP1Q9UNW1 487 aa12.33□□□□□ -0.44
SF3A1-207ENST00000471342 PDZRN3Q9UPQ7 1066 aa12.33□□□□□ -0.44
SF3A1-207ENST00000471342 LTBP1Q14766 1721 aa12.33□□□□□ -0.44
SF3A1-207ENST00000471342 DUOX1Q9NRD9 1551 aa12.32□□□□□ -0.44
SF3A1-207ENST00000471342 A0A0G2JLW4 131 aa12.32□□□□□ -0.44
SF3A1-207ENST00000471342 RPS8P62241 208 aaKnown RBP12.32□□□□□ -0.44
SF3A1-207ENST00000471342 IFIT5Q13325 482 aaKnown RBP12.32□□□□□ -0.44
SF3A1-207ENST00000471342 STYK1Q6J9G0 422 aa12.32□□□□□ -0.44
SF3A1-207ENST00000471342 RHPN1Q8TCX5 695 aa12.32□□□□□ -0.44
SF3A1-207ENST00000471342 EAF2Q96CJ1 260 aaPredicted RBP12.32□□□□□ -0.44
SF3A1-207ENST00000471342 RWDD1Q9H446 243 aaPredicted RBP12.32□□□□□ -0.44
SF3A1-207ENST00000471342 FBXO3Q9UK99 471 aa12.32□□□□□ -0.44
SF3A1-207ENST00000471342 ANKRD18BA2A2Z9 1011 aa12.31□□□□□ -0.44
SF3A1-207ENST00000471342 SURF6O75683 361 aaKnown RBP12.31□□□□□ -0.44
SF3A1-207ENST00000471342 NPR1P16066 1061 aa12.31□□□□□ -0.44
SF3A1-207ENST00000471342 ST5P78524 1137 aa12.31□□□□□ -0.44
SF3A1-207ENST00000471342 TFCP2Q12800 502 aa12.31□□□□□ -0.44
SF3A1-207ENST00000471342 CENPQQ7L2Z9 268 aaPredicted RBP12.31□□□□□ -0.44
SF3A1-207ENST00000471342 C2CD5Q86YS7 1000 aa12.31□□□□□ -0.44
SF3A1-207ENST00000471342 SPON1Q9HCB6 807 aa12.31□□□□□ -0.44
SF3A1-207ENST00000471342 TLR7Q9NYK1 1049 aaKnown RBP12.31□□□□□ -0.44
SF3A1-207ENST00000471342 HDAC5Q9UQL6 1122 aa12.31□□□□□ -0.44
SF3A1-207ENST00000471342 CD2APQ9Y5K6 639 aa12.31□□□□□ -0.44
SF3A1-207ENST00000471342 PDE6BP35913 854 aa12.3□□□□□ -0.44
SF3A1-207ENST00000471342 PRELPP51888 382 aa12.3□□□□□ -0.44
SF3A1-207ENST00000471342 TGFB2P61812 414 aa12.3□□□□□ -0.44
SF3A1-207ENST00000471342 CCDC57Q2TAC2 916 aa12.3□□□□□ -0.44
SF3A1-207ENST00000471342 GCC1Q96CN9 775 aa12.3□□□□□ -0.44
SF3A1-207ENST00000471342 MASTLQ96GX5 879 aa12.3□□□□□ -0.44
SF3A1-207ENST00000471342 SIL1Q9H173 461 aa12.3□□□□□ -0.44
SF3A1-207ENST00000471342 LRRC37AA6NMS7 1700 aa12.3□□□□□ -0.44
SF3A1-207ENST00000471342 MYH3P11055 1940 aa12.29□□□□□ -0.44
SF3A1-207ENST00000471342 UTRNP46939 3433 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms