RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 CST9Q5W186 159 aa11.83□□□□□ -0.52
SF3A1-206ENST00000471037 CAPNS2Q96L46 248 aa11.83□□□□□ -0.52
SF3A1-206ENST00000471037 LRRC37AA6NMS7 1700 aa11.83□□□□□ -0.52
SF3A1-206ENST00000471037 TRAF5O00463 557 aa11.82□□□□□ -0.52
SF3A1-206ENST00000471037 TMPOP42166 694 aaKnown RBP11.82□□□□□ -0.52
SF3A1-206ENST00000471037 CIAPIN1Q6FI81 312 aa11.82□□□□□ -0.52
SF3A1-206ENST00000471037 DPP8Q6V1X1 898 aaPredicted RBP11.82□□□□□ -0.52
SF3A1-206ENST00000471037 COPS6Q7L5N1 327 aa11.82□□□□□ -0.52
SF3A1-206ENST00000471037 MPNDQ8N594 471 aa11.82□□□□□ -0.52
SF3A1-206ENST00000471037 XAGE3Q8WTP9 111 aa11.82□□□□□ -0.52
SF3A1-206ENST00000471037 PGAP2Q9UHJ9 254 aa11.82□□□□□ -0.52
SF3A1-206ENST00000471037 DUOX1Q9NRD9 1551 aa11.82□□□□□ -0.52
SF3A1-206ENST00000471037 SH3TC1Q8TE82 1336 aa11.82□□□□□ -0.52
SF3A1-206ENST00000471037 HCLS1P14317 486 aaPredicted RBP11.81□□□□□ -0.52
SF3A1-206ENST00000471037 GMPSP49915 693 aaPredicted RBP11.81□□□□□ -0.52
SF3A1-206ENST00000471037 TCIRG1Q13488 830 aa11.81□□□□□ -0.52
SF3A1-206ENST00000471037 GRAPQ13588 217 aa11.81□□□□□ -0.52
SF3A1-206ENST00000471037 CYP4F22Q6NT55 531 aa11.81□□□□□ -0.52
SF3A1-206ENST00000471037 DDX46Q7L014 1031 aaKnown RBP11.81□□□□□ -0.52
SF3A1-206ENST00000471037 TMC4Q7Z404 712 aa11.81□□□□□ -0.52
SF3A1-206ENST00000471037 GRAPLQ8TC17 118 aaPredicted RBP11.81□□□□□ -0.52
SF3A1-206ENST00000471037 ZC3H15Q8WU90 426 aaKnown RBP11.81□□□□□ -0.52
SF3A1-206ENST00000471037 HHIPL1Q96JK4 782 aa11.81□□□□□ -0.52
SF3A1-206ENST00000471037 GPR101Q96P66 508 aaPredicted RBP11.81□□□□□ -0.52
SF3A1-206ENST00000471037 TRMT112Q9UI30 125 aaKnown RBP11.81□□□□□ -0.52
SF3A1-206ENST00000471037 MAP2K2P36507 400 aa11.8□□□□□ -0.52
SF3A1-206ENST00000471037 AIMP1Q12904 312 aaKnown RBP11.8□□□□□ -0.52
SF3A1-206ENST00000471037 PAXIP1Q6ZW49 1069 aaPredicted RBP11.8□□□□□ -0.52
SF3A1-206ENST00000471037 SAPCD2Q86UD0 394 aa11.8□□□□□ -0.52
SF3A1-206ENST00000471037 ABHD8Q96I13 439 aa11.8□□□□□ -0.52
SF3A1-206ENST00000471037 BEGAINQ9BUH8 593 aa11.8□□□□□ -0.52
SF3A1-206ENST00000471037 CHL1O00533 1208 aa11.79□□□□□ -0.52
SF3A1-206ENST00000471037 CELF2O95319 508 aaKnown RBP11.79□□□□□ -0.52
SF3A1-206ENST00000471037 HOXB7P09629 217 aa11.79□□□□□ -0.52
SF3A1-206ENST00000471037 TNIP1Q15025 636 aa11.79□□□□□ -0.52
SF3A1-206ENST00000471037 WDR43Q15061 677 aaKnown RBP eCLIP11.79□□□□□ -0.52
SF3A1-206ENST00000471037 NECTIN2Q92692 538 aa11.79□□□□□ -0.52
SF3A1-206ENST00000471037 GLIS2Q9BZE0 524 aaPredicted RBP11.79□□□□□ -0.52
SF3A1-206ENST00000471037 DDX60Q8IY21 1712 aaKnown RBP11.79□□□□□ -0.52
SF3A1-206ENST00000471037 YDJCA8MPS7 323 aa11.78□□□□□ -0.52
SF3A1-206ENST00000471037 RAD17O75943 681 aa11.78□□□□□ -0.52
SF3A1-206ENST00000471037 HIRAP54198 1017 aaPredicted RBP11.78□□□□□ -0.52
SF3A1-206ENST00000471037 PLBD2Q8NHP8 589 aa11.78□□□□□ -0.52
SF3A1-206ENST00000471037 TRPM4Q8TD43 1214 aa11.78□□□□□ -0.52
SF3A1-206ENST00000471037 BCL2L13Q9BXK5 485 aa11.78□□□□□ -0.52
SF3A1-206ENST00000471037 CHPF2Q9P2E5 772 aa11.78□□□□□ -0.52
SF3A1-206ENST00000471037 CA12O43570 354 aa11.77□□□□□ -0.53
SF3A1-206ENST00000471037 AOC2O75106 756 aa11.77□□□□□ -0.53
SF3A1-206ENST00000471037 GRM1Q13255 1194 aa11.77□□□□□ -0.53
SF3A1-206ENST00000471037 SF3B3Q15393 1217 aaKnown RBP11.77□□□□□ -0.53
SF3A1-206ENST00000471037 KRT24Q2M2I5 525 aa11.77□□□□□ -0.53
SF3A1-206ENST00000471037 CDC37L1Q7L3B6 337 aa11.77□□□□□ -0.53
SF3A1-206ENST00000471037 DPF2Q92785 391 aa11.77□□□□□ -0.53
SF3A1-206ENST00000471037 ISCA1Q9BUE6 129 aa11.77□□□□□ -0.53
SF3A1-206ENST00000471037 TRIM35Q9UPQ4 493 aa11.77□□□□□ -0.53
SF3A1-206ENST00000471037 BRPF1P55201 1214 aaPredicted RBP11.76□□□□□ -0.53
SF3A1-206ENST00000471037 HDGFL1Q5TGJ6 251 aa11.76□□□□□ -0.53
SF3A1-206ENST00000471037 ANKRD13DQ6ZTN6 518 aa11.76□□□□□ -0.53
SF3A1-206ENST00000471037 MICALL2Q8IY33 904 aa11.76□□□□□ -0.53
SF3A1-206ENST00000471037 FAM9BQ8IZU0 186 aa11.76□□□□□ -0.53
SF3A1-206ENST00000471037 DBF4Q9UBU7 674 aaPredicted RBP11.76□□□□□ -0.53
SF3A1-206ENST00000471037 CNOT7Q9UIV1 285 aaKnown RBP11.76□□□□□ -0.53
SF3A1-206ENST00000471037 COL4A1P02462 1669 aa11.75□□□□□ -0.53
SF3A1-206ENST00000471037 TAF1P21675 1872 aa11.75□□□□□ -0.53
SF3A1-206ENST00000471037 H7C1D1 291 aa11.75□□□□□ -0.53
SF3A1-206ENST00000471037 TRIM28Q13263 835 aaKnown RBP11.75□□□□□ -0.53
SF3A1-206ENST00000471037 NEUROD2Q15784 382 aa11.75□□□□□ -0.53
SF3A1-206ENST00000471037 WASHC4Q2M389 1173 aa11.75□□□□□ -0.53
SF3A1-206ENST00000471037 CELF1Q92879 486 aaKnown RBP11.75□□□□□ -0.53
SF3A1-206ENST00000471037 RUNDC1Q96C34 613 aa11.75□□□□□ -0.53
SF3A1-206ENST00000471037 FAM89AQ96GI7 184 aa11.75□□□□□ -0.53
SF3A1-206ENST00000471037 SHTN1A0MZ66 631 aa11.74□□□□□ -0.53
SF3A1-206ENST00000471037 PSMD14O00487 310 aa11.74□□□□□ -0.53
SF3A1-206ENST00000471037 RPS12P25398 132 aaKnown RBP11.74□□□□□ -0.53
SF3A1-206ENST00000471037 NOGQ13253 232 aa11.74□□□□□ -0.53
SF3A1-206ENST00000471037 CCDC146Q8IYE0 955 aa11.74□□□□□ -0.53
SF3A1-206ENST00000471037 HYPKQ9NX55 129 aa11.74□□□□□ -0.53
SF3A1-206ENST00000471037 NSFL1CQ9UNZ2 370 aaKnown RBP11.74□□□□□ -0.53
SF3A1-206ENST00000471037 ZBTB12Q9Y330 459 aaPredicted RBP11.74□□□□□ -0.53
SF3A1-206ENST00000471037 RTL9Q8NET4 1388 aa11.73□□□□□ -0.53
SF3A1-206ENST00000471037 CFAP44Q96MT7 982 aa11.73□□□□□ -0.53
SF3A1-206ENST00000471037 ZNF408Q9H9D4 720 aa11.73□□□□□ -0.53
SF3A1-206ENST00000471037 DBNDD1Q9H9R9 158 aa11.73□□□□□ -0.53
SF3A1-206ENST00000471037 POLLQ9UGP5 575 aa11.73□□□□□ -0.53
SF3A1-206ENST00000471037 TSKSQ9UJT2 592 aa11.73□□□□□ -0.53
SF3A1-206ENST00000471037 ADAMTS8Q9UP79 889 aa11.73□□□□□ -0.53
SF3A1-206ENST00000471037 LAS1LQ9Y4W2 734 aaKnown RBP11.73□□□□□ -0.53
SF3A1-206ENST00000471037 ZNF609O15014 1411 aa11.72□□□□□ -0.53
SF3A1-206ENST00000471037 ATP5J2-PTCD1G3V325 749 aa11.72□□□□□ -0.53
SF3A1-206ENST00000471037 IRS4O14654 1257 aaPredicted RBP11.72□□□□□ -0.53
SF3A1-206ENST00000471037 ECE2O60344 883 aa11.72□□□□□ -0.53
SF3A1-206ENST00000471037 RGS19P49795 217 aa11.72□□□□□ -0.53
SF3A1-206ENST00000471037 HUNKP57058 714 aa11.72□□□□□ -0.53
SF3A1-206ENST00000471037 GPSM2P81274 684 aa11.72□□□□□ -0.53
SF3A1-206ENST00000471037 FAM161AQ3B820 660 aa11.72□□□□□ -0.53
SF3A1-206ENST00000471037 DUSP27Q5VZP5 1158 aa11.72□□□□□ -0.53
SF3A1-206ENST00000471037 SAMD7Q7Z3H4 446 aa11.72□□□□□ -0.53
SF3A1-206ENST00000471037 USP48Q86UV5 1035 aa11.72□□□□□ -0.53
SF3A1-206ENST00000471037 TBC1D16Q8TBP0 767 aa11.72□□□□□ -0.53
SF3A1-206ENST00000471037 ZNF428Q96B54 188 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms