RNA–Protein interactions for RNA: ENST00000470588.1

SMARCD3-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,755 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-206ENST00000470588 IL15P40933 162 aaPredicted RBP20.48■□□□□ 0.87
SMARCD3-206ENST00000470588 ITPK1Q13572 414 aa20.48■□□□□ 0.87
SMARCD3-206ENST00000470588 PLA2G12BQ9BX93 195 aa20.48■□□□□ 0.87
SMARCD3-206ENST00000470588 BOLA2Q9H3K6 86 aa20.48■□□□□ 0.87
SMARCD3-206ENST00000470588 INTS5Q6P9B9 1019 aaKnown RBP20.47■□□□□ 0.87
SMARCD3-206ENST00000470588 NUP98P52948 1817 aa20.47■□□□□ 0.87
SMARCD3-206ENST00000470588 CIAO1O76071 339 aa20.46■□□□□ 0.87
SMARCD3-206ENST00000470588 ATG9AQ7Z3C6 839 aa20.46■□□□□ 0.87
SMARCD3-206ENST00000470588 EIF5P55010 431 aaKnown RBP20.46■□□□□ 0.87
SMARCD3-206ENST00000470588 ZBTB38Q8NAP3 1195 aaPredicted RBP20.46■□□□□ 0.87
SMARCD3-206ENST00000470588 TNPO1Q92973 898 aaKnown RBP20.46■□□□□ 0.87
SMARCD3-206ENST00000470588 SNRKQ9NRH2 765 aa20.46■□□□□ 0.87
SMARCD3-206ENST00000470588 DBNLQ9UJU6 430 aaKnown RBP20.46■□□□□ 0.87
SMARCD3-206ENST00000470588 FBXO3Q9UK99 471 aa20.46■□□□□ 0.87
SMARCD3-206ENST00000470588 EYA2O00167 538 aa20.45■□□□□ 0.86
SMARCD3-206ENST00000470588 NUCB2P80303 420 aa20.45■□□□□ 0.86
SMARCD3-206ENST00000470588 FAM182BQ5T319 152 aa20.45■□□□□ 0.86
SMARCD3-206ENST00000470588 GBP4Q96PP9 640 aa20.45■□□□□ 0.86
SMARCD3-206ENST00000470588 DDX11L8A8MPP1 907 aa20.44■□□□□ 0.86
SMARCD3-206ENST00000470588 LY75O60449 1722 aa20.44■□□□□ 0.86
SMARCD3-206ENST00000470588 BRWD3Q6RI45 1802 aa20.44■□□□□ 0.86
SMARCD3-206ENST00000470588 RBM6P78332 1123 aaKnown RBP20.44■□□□□ 0.86
SMARCD3-206ENST00000470588 KCNB2Q92953 911 aa20.44■□□□□ 0.86
SMARCD3-206ENST00000470588 FSD1Q9BTV5 496 aa20.44■□□□□ 0.86
SMARCD3-206ENST00000470588 SNX14Q9Y5W7 946 aa20.44■□□□□ 0.86
SMARCD3-206ENST00000470588 CNTNAP4Q9C0A0 1308 aa20.43■□□□□ 0.86
SMARCD3-206ENST00000470588 MYH14Q7Z406 1995 aaKnown RBP20.43■□□□□ 0.86
SMARCD3-206ENST00000470588 CSF1RP07333 972 aa20.43■□□□□ 0.86
SMARCD3-206ENST00000470588 CCDC57Q2TAC2 916 aa20.43■□□□□ 0.86
SMARCD3-206ENST00000470588 FAM196AQ6ZSG2 479 aa20.43■□□□□ 0.86
SMARCD3-206ENST00000470588 KRT27Q7Z3Y8 459 aa20.43■□□□□ 0.86
SMARCD3-206ENST00000470588 TMX3Q96JJ7 454 aa20.43■□□□□ 0.86
SMARCD3-206ENST00000470588 TBC1D2BQ9UPU7 963 aa20.43■□□□□ 0.86
SMARCD3-206ENST00000470588 CDHR2Q9BYE9 1310 aa20.43■□□□□ 0.86
SMARCD3-206ENST00000470588 PTMSP20962 102 aa20.42■□□□□ 0.86
SMARCD3-206ENST00000470588 NMIQ13287 307 aaPredicted RBP20.42■□□□□ 0.86
SMARCD3-206ENST00000470588 CUL4AQ13619 759 aa20.42■□□□□ 0.86
SMARCD3-206ENST00000470588 CLEC17AQ6ZS10 378 aa20.42■□□□□ 0.86
SMARCD3-206ENST00000470588 TICAM2Q86XR7 235 aa20.42■□□□□ 0.86
SMARCD3-206ENST00000470588 DBNDD2Q9BQY9 259 aa20.42■□□□□ 0.86
SMARCD3-206ENST00000470588 BCL11BQ9C0K0 894 aaPredicted RBP20.42■□□□□ 0.86
SMARCD3-206ENST00000470588 HLFQ16534 295 aa20.41■□□□□ 0.86
SMARCD3-206ENST00000470588 NLRP10Q86W26 655 aa20.41■□□□□ 0.86
SMARCD3-206ENST00000470588 LINC00116Q8NCU8 138 aa20.41■□□□□ 0.86
SMARCD3-206ENST00000470588 HAUS7Q99871 368 aa20.41■□□□□ 0.86
SMARCD3-206ENST00000470588 CCNL1Q9UK58 526 aaPredicted RBP20.41■□□□□ 0.86
SMARCD3-206ENST00000470588 PTH1RQ03431 593 aa20.41■□□□□ 0.86
SMARCD3-206ENST00000470588 ZNF652Q9Y2D9 606 aa20.41■□□□□ 0.86
SMARCD3-206ENST00000470588 RFX7Q2KHR2 1363 aa20.4■□□□□ 0.86
SMARCD3-206ENST00000470588 BCORQ6W2J9 1755 aa20.4■□□□□ 0.86
SMARCD3-206ENST00000470588 RC3H1Q5TC82 1133 aaKnown RBP20.4■□□□□ 0.86
SMARCD3-206ENST00000470588 FAM89AQ96GI7 184 aa20.4■□□□□ 0.86
SMARCD3-206ENST00000470588 INTS4Q96HW7 963 aaKnown RBP20.4■□□□□ 0.86
SMARCD3-206ENST00000470588 GPTP24298 496 aa20.39■□□□□ 0.86
SMARCD3-206ENST00000470588 LRRC24Q50LG9 513 aa20.39■□□□□ 0.86
SMARCD3-206ENST00000470588 PTF1AQ7RTS3 328 aa20.39■□□□□ 0.86
SMARCD3-206ENST00000470588 MAP4K1Q92918 833 aa20.39■□□□□ 0.86
SMARCD3-206ENST00000470588 FAM227BQ96M60 508 aa20.39■□□□□ 0.86
SMARCD3-206ENST00000470588 TM6SF1Q9BZW5 370 aa20.39■□□□□ 0.86
SMARCD3-206ENST00000470588 CEP126Q9P2H0 1117 aa20.39■□□□□ 0.86
SMARCD3-206ENST00000470588 CCDC171Q6TFL3 1326 aa20.39■□□□□ 0.85
SMARCD3-206ENST00000470588 NECTIN1Q15223 517 aa20.39■□□□□ 0.85
SMARCD3-206ENST00000470588 RASEFQ8IZ41 740 aa20.39■□□□□ 0.85
SMARCD3-206ENST00000470588 ZNF594Q96JF6 807 aaPredicted RBP20.39■□□□□ 0.85
SMARCD3-206ENST00000470588 NEUROD6Q96NK8 337 aa20.39■□□□□ 0.85
SMARCD3-206ENST00000470588 TAF1LQ8IZX4 1826 aa20.38■□□□□ 0.85
SMARCD3-206ENST00000470588 UPF3BQ9BZI7 483 aaKnown RBP20.38■□□□□ 0.85
SMARCD3-206ENST00000470588 AKAP2Q9Y2D5 859 aa20.38■□□□□ 0.85
SMARCD3-206ENST00000470588 CYP2E1P05181 493 aaPredicted RBP20.37■□□□□ 0.85
SMARCD3-206ENST00000470588 SSFA2P28290 1259 aa20.37■□□□□ 0.85
SMARCD3-206ENST00000470588 IFIT5Q13325 482 aaKnown RBP20.37■□□□□ 0.85
SMARCD3-206ENST00000470588 TRAK2O60296 914 aa20.36■□□□□ 0.85
SMARCD3-206ENST00000470588 CAMTA2O94983 1202 aa20.36■□□□□ 0.85
SMARCD3-206ENST00000470588 HMGB2P26583 209 aaKnown RBP20.36■□□□□ 0.85
SMARCD3-206ENST00000470588 TIMM10P62072 90 aa20.36■□□□□ 0.85
SMARCD3-206ENST00000470588 PARP10Q53GL7 1025 aa20.36■□□□□ 0.85
SMARCD3-206ENST00000470588 ZNF34Q8IZ26 560 aa20.36■□□□□ 0.85
SMARCD3-206ENST00000470588 ZGPATQ8N5A5 531 aaKnown RBP20.36■□□□□ 0.85
SMARCD3-206ENST00000470588 TTC14Q96N46 770 aa20.36■□□□□ 0.85
SMARCD3-206ENST00000470588 PUS3Q9BZE2 481 aaKnown RBP20.36■□□□□ 0.85
SMARCD3-206ENST00000470588 TRMT112Q9UI30 125 aaKnown RBP20.36■□□□□ 0.85
SMARCD3-206ENST00000470588 MYH3P11055 1940 aa20.36■□□□□ 0.85
SMARCD3-206ENST00000470588 A0A0D9SFI3 127 aa20.36■□□□□ 0.85
SMARCD3-206ENST00000470588 ZKSCAN1P17029 563 aaPredicted RBP20.36■□□□□ 0.85
SMARCD3-206ENST00000470588 PRPF40BQ6NWY9 871 aaKnown RBP20.36■□□□□ 0.85
SMARCD3-206ENST00000470588 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.36■□□□□ 0.85
SMARCD3-206ENST00000470588 RBM8AQ9Y5S9 174 aaKnown RBP20.36■□□□□ 0.85
SMARCD3-206ENST00000470588 RGL2O15211 777 aa20.35■□□□□ 0.85
SMARCD3-206ENST00000470588 HSP90B1P14625 803 aaKnown RBP20.35■□□□□ 0.85
SMARCD3-206ENST00000470588 TAF7LQ5H9L4 462 aa20.35■□□□□ 0.85
SMARCD3-206ENST00000470588 MED23Q9ULK4 1368 aa20.35■□□□□ 0.85
SMARCD3-206ENST00000470588 SCN7AQ01118 1682 aa20.35■□□□□ 0.85
SMARCD3-206ENST00000470588 A0A1B0GUL7 405 aa20.34■□□□□ 0.85
SMARCD3-206ENST00000470588 KCNJ4P48050 445 aa20.34■□□□□ 0.85
SMARCD3-206ENST00000470588 SKOR2Q2VWA4 1001 aaPredicted RBP20.34■□□□□ 0.85
SMARCD3-206ENST00000470588 CLEC4GQ6UXB4 293 aa20.34■□□□□ 0.85
SMARCD3-206ENST00000470588 KBTBD3Q8NAB2 608 aa20.34■□□□□ 0.85
SMARCD3-206ENST00000470588 TTLL11Q8NHH1 800 aa20.34■□□□□ 0.85
SMARCD3-206ENST00000470588 EDC3Q96F86 508 aaKnown RBP20.34■□□□□ 0.85
SMARCD3-206ENST00000470588 AK7Q96M32 723 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms