RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 RIPOR1Q6ZS17 1223 aa9.52□□□□□ -0.89
PTCD3-208ENST00000469585 PPFIA3O75145 1194 aa9.51□□□□□ -0.89
PTCD3-208ENST00000469585 NOM1Q5C9Z4 860 aaKnown RBP9.51□□□□□ -0.89
PTCD3-208ENST00000469585 EFHC2Q5JST6 749 aa9.51□□□□□ -0.89
PTCD3-208ENST00000469585 TMCO4Q5TGY1 634 aa9.51□□□□□ -0.89
PTCD3-208ENST00000469585 TREML1Q86YW5 311 aa9.51□□□□□ -0.89
PTCD3-208ENST00000469585 TRIM22Q8IYM9 498 aa9.51□□□□□ -0.89
PTCD3-208ENST00000469585 NEUROD4Q9HD90 331 aa9.51□□□□□ -0.89
PTCD3-208ENST00000469585 BIN2Q9UBW5 565 aaPredicted RBP9.51□□□□□ -0.89
PTCD3-208ENST00000469585 NEO1Q92859 1461 aa9.51□□□□□ -0.89
PTCD3-208ENST00000469585 CCNB3Q8WWL7 1395 aa9.5□□□□□ -0.89
PTCD3-208ENST00000469585 H7C1W4 665 aa9.5□□□□□ -0.89
PTCD3-208ENST00000469585 MICAL2O94851 1124 aa9.5□□□□□ -0.89
PTCD3-208ENST00000469585 SAMD5Q5TGI4 173 aa9.5□□□□□ -0.89
PTCD3-208ENST00000469585 ALKBH2Q6NS38 261 aa9.5□□□□□ -0.89
PTCD3-208ENST00000469585 BTLAQ7Z6A9 289 aa9.5□□□□□ -0.89
PTCD3-208ENST00000469585 NUCKS1Q9H1E3 243 aaKnown RBP9.5□□□□□ -0.89
PTCD3-208ENST00000469585 FANCAO15360 1455 aa9.5□□□□□ -0.89
PTCD3-208ENST00000469585 ARHGAP5Q13017 1502 aa9.5□□□□□ -0.89
PTCD3-208ENST00000469585 MYO5CQ9NQX4 1742 aa9.49□□□□□ -0.89
PTCD3-208ENST00000469585 ZAP70P43403 619 aa9.49□□□□□ -0.89
PTCD3-208ENST00000469585 ZNF837Q96EG3 531 aaPredicted RBP9.49□□□□□ -0.89
PTCD3-208ENST00000469585 GMCL1Q96IK5 515 aa9.49□□□□□ -0.89
PTCD3-208ENST00000469585 ZCCHC2Q9C0B9 1178 aaKnown RBP9.49□□□□□ -0.89
PTCD3-208ENST00000469585 GJA3Q9Y6H8 435 aa9.49□□□□□ -0.89
PTCD3-208ENST00000469585 EHBP1L1Q8N3D4 1523 aa9.49□□□□□ -0.89
PTCD3-208ENST00000469585 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.48□□□□□ -0.89
PTCD3-208ENST00000469585 OPLAHO14841 1288 aa9.48□□□□□ -0.89
PTCD3-208ENST00000469585 FZD6O60353 706 aa9.48□□□□□ -0.89
PTCD3-208ENST00000469585 INPP5BP32019 993 aa9.48□□□□□ -0.89
PTCD3-208ENST00000469585 IDH3AP50213 366 aa9.48□□□□□ -0.89
PTCD3-208ENST00000469585 TYRO3Q06418 890 aa9.48□□□□□ -0.89
PTCD3-208ENST00000469585 CCDC27Q2M243 656 aa9.48□□□□□ -0.89
PTCD3-208ENST00000469585 ATCAYQ86WG3 371 aa9.48□□□□□ -0.89
PTCD3-208ENST00000469585 FIGNL1Q6PIW4 674 aa9.47□□□□□ -0.89
PTCD3-208ENST00000469585 NDFIP2Q9NV92 336 aa9.47□□□□□ -0.89
PTCD3-208ENST00000469585 CFDP1Q9UEE9 299 aaPredicted RBP9.47□□□□□ -0.89
PTCD3-208ENST00000469585 PLCH2O75038 1416 aa9.47□□□□□ -0.89
PTCD3-208ENST00000469585 FAM157BP0CG42 384 aa9.46□□□□□ -0.9
PTCD3-208ENST00000469585 NANOS1Q8WY41 292 aaKnown RBP9.46□□□□□ -0.9
PTCD3-208ENST00000469585 CCDC87Q9NVE4 849 aa9.46□□□□□ -0.9
PTCD3-208ENST00000469585 HCN2Q9UL51 889 aa9.46□□□□□ -0.9
PTCD3-208ENST00000469585 PCDHGC4Q9Y5F7 938 aa9.46□□□□□ -0.9
PTCD3-208ENST00000469585 AKNAQ7Z591 1439 aa9.46□□□□□ -0.9
PTCD3-208ENST00000469585 DENND4BO75064 1496 aaPredicted RBP9.46□□□□□ -0.9
PTCD3-208ENST00000469585 ADGRL1O94910 1474 aa9.46□□□□□ -0.9
PTCD3-208ENST00000469585 ARAP3Q8WWN8 1544 aa9.46□□□□□ -0.9
PTCD3-208ENST00000469585 TTC37Q6PGP7 1564 aa9.46□□□□□ -0.9
PTCD3-208ENST00000469585 SUPT6HQ7KZ85 1726 aaKnown RBP9.45□□□□□ -0.9
PTCD3-208ENST00000469585 ATXN7O15265 892 aaPredicted RBP9.45□□□□□ -0.9
PTCD3-208ENST00000469585 EFSO43281 561 aa9.45□□□□□ -0.9
PTCD3-208ENST00000469585 GRNP28799 593 aaKnown RBP9.45□□□□□ -0.9
PTCD3-208ENST00000469585 ARSDP51689 593 aa9.45□□□□□ -0.9
PTCD3-208ENST00000469585 MFAP1P55081 439 aaKnown RBP9.45□□□□□ -0.9
PTCD3-208ENST00000469585 ZNF787Q6DD87 383 aa9.45□□□□□ -0.9
PTCD3-208ENST00000469585 CEP63Q96MT8 703 aa9.45□□□□□ -0.9
PTCD3-208ENST00000469585 NXF1Q9UBU9 619 aaKnown RBP9.45□□□□□ -0.9
PTCD3-208ENST00000469585 DCTN4Q9UJW0 460 aa9.45□□□□□ -0.9
PTCD3-208ENST00000469585 PLEKHH2Q8IVE3 1493 aa9.45□□□□□ -0.9
PTCD3-208ENST00000469585 BNIP3LO60238 219 aa9.44□□□□□ -0.9
PTCD3-208ENST00000469585 MZF1P28698 734 aaPredicted RBP9.44□□□□□ -0.9
PTCD3-208ENST00000469585 MARSP56192 900 aaKnown RBP9.44□□□□□ -0.9
PTCD3-208ENST00000469585 TNP2Q05952 138 aa9.44□□□□□ -0.9
PTCD3-208ENST00000469585 ARID4BQ4LE39 1312 aaPredicted RBP9.44□□□□□ -0.9
PTCD3-208ENST00000469585 TIAM1Q13009 1591 aa9.44□□□□□ -0.9
PTCD3-208ENST00000469585 PPRC1Q5VV67 1664 aaKnown RBP9.44□□□□□ -0.9
PTCD3-208ENST00000469585 ITSN2Q9NZM3 1697 aa9.44□□□□□ -0.9
PTCD3-208ENST00000469585 MAP3K1Q13233 1512 aa9.43□□□□□ -0.9
PTCD3-208ENST00000469585 PDGFAP04085 211 aa9.43□□□□□ -0.9
PTCD3-208ENST00000469585 KCNQ4P56696 695 aa9.43□□□□□ -0.9
PTCD3-208ENST00000469585 AAMPQ13685 434 aa9.43□□□□□ -0.9
PTCD3-208ENST00000469585 DNAJC14Q6Y2X3 702 aaPredicted RBP9.43□□□□□ -0.9
PTCD3-208ENST00000469585 NPAS3Q8IXF0 933 aa9.43□□□□□ -0.9
PTCD3-208ENST00000469585 GPR152Q8TDT2 470 aa9.43□□□□□ -0.9
PTCD3-208ENST00000469585 EDEM1Q92611 657 aa9.43□□□□□ -0.9
PTCD3-208ENST00000469585 GTPBP3Q969Y2 492 aaKnown RBP9.43□□□□□ -0.9
PTCD3-208ENST00000469585 RBCK1Q9BYM8 510 aa9.43□□□□□ -0.9
PTCD3-208ENST00000469585 BRD7Q9NPI1 651 aa9.43□□□□□ -0.9
PTCD3-208ENST00000469585 FAM13BQ9NYF5 915 aa9.43□□□□□ -0.9
PTCD3-208ENST00000469585 BRPF3Q9ULD4 1205 aa9.43□□□□□ -0.9
PTCD3-208ENST00000469585 POLIQ9UNA4 740 aa9.43□□□□□ -0.9
PTCD3-208ENST00000469585 USP20Q9Y2K6 914 aa9.43□□□□□ -0.9
PTCD3-208ENST00000469585 LRRIQ1Q96JM4 1722 aa9.42□□□□□ -0.9
PTCD3-208ENST00000469585 ZNF518AQ6AHZ1 1483 aa9.42□□□□□ -0.9
PTCD3-208ENST00000469585 SCAPERQ9BY12 1400 aa9.42□□□□□ -0.9
PTCD3-208ENST00000469585 DCDC2BA2VCK2 349 aa9.42□□□□□ -0.9
PTCD3-208ENST00000469585 NDUFB5O43674 189 aa9.42□□□□□ -0.9
PTCD3-208ENST00000469585 MAPTP10636 758 aaKnown RBP9.42□□□□□ -0.9
PTCD3-208ENST00000469585 DNM1Q05193 864 aaKnown RBP9.42□□□□□ -0.9
PTCD3-208ENST00000469585 VWA5B2Q8N398 1253 aa9.42□□□□□ -0.9
PTCD3-208ENST00000469585 RTCBQ9Y3I0 505 aaKnown RBP9.42□□□□□ -0.9
PTCD3-208ENST00000469585 CCDC9Q9Y3X0 531 aaKnown RBP9.42□□□□□ -0.9
PTCD3-208ENST00000469585 PREX2Q70Z35 1606 aa9.42□□□□□ -0.9
PTCD3-208ENST00000469585 CDC14CA4D256 554 aa9.41□□□□□ -0.9
PTCD3-208ENST00000469585 KHNYNO15037 678 aaKnown RBP9.41□□□□□ -0.9
PTCD3-208ENST00000469585 RAPGEF3O95398 923 aa9.41□□□□□ -0.9
PTCD3-208ENST00000469585 VEGFBP49765 207 aa9.41□□□□□ -0.9
PTCD3-208ENST00000469585 SV2AQ7L0J3 742 aa9.41□□□□□ -0.9
PTCD3-208ENST00000469585 RGL4Q8IZJ4 473 aa9.41□□□□□ -0.9
PTCD3-208ENST00000469585 PIK3R5Q8WYR1 880 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms