RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 MBD3O95983 291 aa22.86■■□□□ 1.25
VIM-203ENST00000469543 F13A1P00488 732 aa22.86■■□□□ 1.25
VIM-203ENST00000469543 LRRC24Q50LG9 513 aa22.86■■□□□ 1.25
VIM-203ENST00000469543 ATP5JP18859 108 aa22.85■■□□□ 1.25
VIM-203ENST00000469543 WDR17Q8IZU2 1322 aa22.85■■□□□ 1.25
VIM-203ENST00000469543 TM6SF1Q9BZW5 370 aa22.85■■□□□ 1.25
VIM-203ENST00000469543 MTMR6Q9Y217 621 aa22.85■■□□□ 1.25
VIM-203ENST00000469543 LRRC2Q9BYS8 371 aa22.84■■□□□ 1.25
VIM-203ENST00000469543 PUS3Q9BZE2 481 aaKnown RBP22.84■■□□□ 1.25
VIM-203ENST00000469543 A0A0G2JLW4 131 aa22.84■■□□□ 1.25
VIM-203ENST00000469543 ATG9AQ7Z3C6 839 aa22.84■■□□□ 1.25
VIM-203ENST00000469543 MPNDQ8N594 471 aa22.84■■□□□ 1.25
VIM-203ENST00000469543 SLAIN2Q9P270 581 aa22.84■■□□□ 1.25
VIM-203ENST00000469543 MED23Q9ULK4 1368 aa22.83■■□□□ 1.24
VIM-203ENST00000469543 H7C1W4 665 aa22.83■■□□□ 1.24
VIM-203ENST00000469543 HIP1O00291 1037 aa22.83■■□□□ 1.24
VIM-203ENST00000469543 TOB2Q14106 344 aaPredicted RBP22.83■■□□□ 1.24
VIM-203ENST00000469543 BLOC1S2Q6QNY1 142 aa22.83■■□□□ 1.24
VIM-203ENST00000469543 CPDO75976 1380 aa22.82■■□□□ 1.24
VIM-203ENST00000469543 ZNF335Q9H4Z2 1342 aaPredicted RBP22.82■■□□□ 1.24
VIM-203ENST00000469543 PPFIA3O75145 1194 aa22.82■■□□□ 1.24
VIM-203ENST00000469543 PCDH11XQ9BZA7 1347 aa22.81■■□□□ 1.24
VIM-203ENST00000469543 PCDH11YQ9BZA8 1340 aa22.81■■□□□ 1.24
VIM-203ENST00000469543 GOLIM4O00461 696 aa22.81■■□□□ 1.24
VIM-203ENST00000469543 SYNE4Q8N205 404 aa22.81■■□□□ 1.24
VIM-203ENST00000469543 NAP1L5Q96NT1 182 aaPredicted RBP22.81■■□□□ 1.24
VIM-203ENST00000469543 SNRKQ9NRH2 765 aa22.81■■□□□ 1.24
VIM-203ENST00000469543 CWC25Q9NXE8 425 aaPredicted RBP22.81■■□□□ 1.24
VIM-203ENST00000469543 AFDNP55196 1824 aaKnown RBP22.81■■□□□ 1.24
VIM-203ENST00000469543 LMTK3Q96Q04 1460 aa22.8■■□□□ 1.24
VIM-203ENST00000469543 ZNF609O15014 1411 aa22.8■■□□□ 1.24
VIM-203ENST00000469543 DCCP43146 1447 aa22.8■■□□□ 1.24
VIM-203ENST00000469543 EVA1CP58658 441 aa22.8■■□□□ 1.24
VIM-203ENST00000469543 LARP1BQ659C4 914 aaKnown RBP22.8■■□□□ 1.24
VIM-203ENST00000469543 CDC37L1Q7L3B6 337 aa22.8■■□□□ 1.24
VIM-203ENST00000469543 MRC1P22897 1456 aa22.8■■□□□ 1.24
VIM-203ENST00000469543 IL2RBP14784 551 aa22.8■■□□□ 1.24
VIM-203ENST00000469543 RPS6KB1P23443 525 aa22.8■■□□□ 1.24
VIM-203ENST00000469543 KAT6BQ8WYB5 2073 aa22.8■■□□□ 1.24
VIM-203ENST00000469543 CYP21A2P08686 494 aa22.79■■□□□ 1.24
VIM-203ENST00000469543 ASAP1Q9ULH1 1129 aa22.79■■□□□ 1.24
VIM-203ENST00000469543 HAUS7Q99871 368 aa22.78■■□□□ 1.24
VIM-203ENST00000469543 SH2B1Q9NRF2 756 aaPredicted RBP22.78■■□□□ 1.24
VIM-203ENST00000469543 ARFGEF2Q9Y6D5 1785 aa22.78■■□□□ 1.24
VIM-203ENST00000469543 PSMA5P28066 241 aa22.78■■□□□ 1.24
VIM-203ENST00000469543 RNF20Q5VTR2 975 aa22.78■■□□□ 1.24
VIM-203ENST00000469543 ZSCAN31Q96LW9 406 aaPredicted RBP22.78■■□□□ 1.24
VIM-203ENST00000469543 FAM89AQ96GI7 184 aa22.77■■□□□ 1.24
VIM-203ENST00000469543 GLI3P10071 1580 aa22.77■■□□□ 1.24
VIM-203ENST00000469543 TSPY26PQ9H489 355 aa22.77■■□□□ 1.24
VIM-203ENST00000469543 ERVV-2B6SEH9 535 aa22.76■■□□□ 1.23
VIM-203ENST00000469543 JAK2O60674 1132 aa22.76■■□□□ 1.23
VIM-203ENST00000469543 PDLIM2Q96JY6 352 aa22.76■■□□□ 1.23
VIM-203ENST00000469543 DDX11Q96FC9 970 aa22.76■■□□□ 1.23
VIM-203ENST00000469543 GIMAP6Q6P9H5 292 aa22.75■■□□□ 1.23
VIM-203ENST00000469543 STOX1Q6ZVD7 989 aa22.75■■□□□ 1.23
VIM-203ENST00000469543 TFIP11Q9UBB9 837 aaKnown RBP22.75■■□□□ 1.23
VIM-203ENST00000469543 PKD1L3Q7Z443 1732 aa22.75■■□□□ 1.23
VIM-203ENST00000469543 COL5A2P05997 1499 aaPredicted RBP22.75■■□□□ 1.23
VIM-203ENST00000469543 MCMDC2Q4G0Z9 681 aa22.75■■□□□ 1.23
VIM-203ENST00000469543 EIF2AK3Q9NZJ5 1116 aaKnown RBP22.75■■□□□ 1.23
VIM-203ENST00000469543 CHST3Q7LGC8 479 aa22.75■■□□□ 1.23
VIM-203ENST00000469543 ZSCAN30Q86W11 494 aa22.75■■□□□ 1.23
VIM-203ENST00000469543 USPL1Q5W0Q7 1092 aa22.74■■□□□ 1.23
VIM-203ENST00000469543 Q6ZUG5 572 aa22.74■■□□□ 1.23
VIM-203ENST00000469543 TMEM87AQ8NBN3 555 aa22.74■■□□□ 1.23
VIM-203ENST00000469543 NEK1Q96PY6 1258 aa22.74■■□□□ 1.23
VIM-203ENST00000469543 PAG1Q9NWQ8 432 aa22.74■■□□□ 1.23
VIM-203ENST00000469543 SOS2Q07890 1332 aaPredicted RBP22.74■■□□□ 1.23
VIM-203ENST00000469543 A0A1B0GUL7 405 aa22.74■■□□□ 1.23
VIM-203ENST00000469543 HCLS1P14317 486 aaPredicted RBP22.74■■□□□ 1.23
VIM-203ENST00000469543 UBE2HP62256 183 aa22.74■■□□□ 1.23
VIM-203ENST00000469543 DNAJC10Q8IXB1 793 aa22.74■■□□□ 1.23
VIM-203ENST00000469543 KBTBD3Q8NAB2 608 aa22.74■■□□□ 1.23
VIM-203ENST00000469543 FKBP4Q02790 459 aaKnown RBP eCLIP22.73■■□□□ 1.23
VIM-203ENST00000469543 SYAP1Q96A49 352 aaPredicted RBP22.73■■□□□ 1.23
VIM-203ENST00000469543 CARD10Q9BWT7 1032 aa22.73■■□□□ 1.23
VIM-203ENST00000469543 FOSBP53539 338 aa22.72■■□□□ 1.23
VIM-203ENST00000469543 PIGBQ92521 554 aa22.72■■□□□ 1.23
VIM-203ENST00000469543 EYA2O00167 538 aa22.72■■□□□ 1.23
VIM-203ENST00000469543 ADORA1P30542 326 aa22.72■■□□□ 1.23
VIM-203ENST00000469543 HSP90AB3PQ58FF7 597 aa22.72■■□□□ 1.23
VIM-203ENST00000469543 TTC6Q86TZ1 520 aa22.72■■□□□ 1.23
VIM-203ENST00000469543 CCDC191Q8NCU4 936 aa22.72■■□□□ 1.23
VIM-203ENST00000469543 BRF1Q92994 677 aa22.72■■□□□ 1.23
VIM-203ENST00000469543 GPTP24298 496 aa22.71■■□□□ 1.23
VIM-203ENST00000469543 NKX1-1Q15270 411 aaPredicted RBP22.71■■□□□ 1.23
VIM-203ENST00000469543 PI16Q6UXB8 463 aa22.71■■□□□ 1.23
VIM-203ENST00000469543 TMOD3Q9NYL9 352 aa22.71■■□□□ 1.23
VIM-203ENST00000469543 XIRP1Q702N8 1843 aaKnown RBP22.71■■□□□ 1.23
VIM-203ENST00000469543 TTLL5Q6EMB2 1281 aa22.71■■□□□ 1.23
VIM-203ENST00000469543 ATP6V1DQ9Y5K8 247 aa22.7■■□□□ 1.22
VIM-203ENST00000469543 KCPQ6ZWJ8 1503 aa22.7■■□□□ 1.22
VIM-203ENST00000469543 HSP90B1P14625 803 aaKnown RBP22.7■■□□□ 1.22
VIM-203ENST00000469543 CAMK4Q16566 473 aa22.7■■□□□ 1.22
VIM-203ENST00000469543 TSGA10IPQ3SY00 556 aa22.7■■□□□ 1.22
VIM-203ENST00000469543 JCADQ9P266 1359 aa22.7■■□□□ 1.22
VIM-203ENST00000469543 IFIT1P09914 478 aaKnown RBP22.69■■□□□ 1.22
VIM-203ENST00000469543 MSNP26038 577 aaKnown RBP22.69■■□□□ 1.22
VIM-203ENST00000469543 CCDC183Q5T5S1 534 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms