RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 HSP90B1P14625 803 aaKnown RBP23.21■■□□□ 1.31
SMC4-209ENST00000468653 ATG9AQ7Z3C6 839 aa23.21■■□□□ 1.31
SMC4-209ENST00000468653 TBC1D32Q96NH3 1257 aa23.21■■□□□ 1.31
SMC4-209ENST00000468653 IPO9Q96P70 1041 aaKnown RBP23.21■■□□□ 1.31
SMC4-209ENST00000468653 C4BP0C0L5 1744 aa23.21■■□□□ 1.31
SMC4-209ENST00000468653 TNNI3KQ59H18 835 aa23.2■■□□□ 1.3
SMC4-209ENST00000468653 ARHGEF1Q92888 912 aaKnown RBP23.2■■□□□ 1.3
SMC4-209ENST00000468653 FPGT-TNNI3KV9GXZ4 949 aa23.2■■□□□ 1.3
SMC4-209ENST00000468653 NTSR2O95665 410 aa23.19■■□□□ 1.3
SMC4-209ENST00000468653 HCLS1P14317 486 aaPredicted RBP23.19■■□□□ 1.3
SMC4-209ENST00000468653 LRRC24Q50LG9 513 aa23.19■■□□□ 1.3
SMC4-209ENST00000468653 TRAPPC3LQ5T215 181 aa23.19■■□□□ 1.3
SMC4-209ENST00000468653 GREM2Q9H772 168 aa23.19■■□□□ 1.3
SMC4-209ENST00000468653 SRP68Q9UHB9 627 aaKnown RBP23.19■■□□□ 1.3
SMC4-209ENST00000468653 FBXO3Q9UK99 471 aa23.19■■□□□ 1.3
SMC4-209ENST00000468653 ANKRD18BA2A2Z9 1011 aa23.19■■□□□ 1.3
SMC4-209ENST00000468653 PHF14O94880 888 aa23.19■■□□□ 1.3
SMC4-209ENST00000468653 ITGA6P23229 1130 aa23.19■■□□□ 1.3
SMC4-209ENST00000468653 DDRGK1Q96HY6 314 aa23.19■■□□□ 1.3
SMC4-209ENST00000468653 C22orf23Q9BZE7 217 aa23.19■■□□□ 1.3
SMC4-209ENST00000468653 RFC4P35249 363 aa23.18■■□□□ 1.3
SMC4-209ENST00000468653 BICDL1Q6ZP65 573 aa23.18■■□□□ 1.3
SMC4-209ENST00000468653 BCL2L12Q9HB09 334 aa23.18■■□□□ 1.3
SMC4-209ENST00000468653 TLR7Q9NYK1 1049 aaKnown RBP23.18■■□□□ 1.3
SMC4-209ENST00000468653 TBC1D9BQ66K14 1250 aa23.17■■□□□ 1.3
SMC4-209ENST00000468653 AMIGO3Q86WK7 504 aa23.17■■□□□ 1.3
SMC4-209ENST00000468653 PUS3Q9BZE2 481 aaKnown RBP23.17■■□□□ 1.3
SMC4-209ENST00000468653 RGS17Q9UGC6 210 aaPredicted RBP23.17■■□□□ 1.3
SMC4-209ENST00000468653 SCN7AQ01118 1682 aa23.17■■□□□ 1.3
SMC4-209ENST00000468653 MAP4K4O95819 1239 aaPredicted RBP23.17■■□□□ 1.3
SMC4-209ENST00000468653 HMGB2P26583 209 aaKnown RBP23.17■■□□□ 1.3
SMC4-209ENST00000468653 CNTROBQ8N137 903 aa23.17■■□□□ 1.3
SMC4-209ENST00000468653 MYH3P11055 1940 aa23.16■■□□□ 1.3
SMC4-209ENST00000468653 GPR108Q9NPR9 543 aa23.16■■□□□ 1.3
SMC4-209ENST00000468653 CEP126Q9P2H0 1117 aa23.16■■□□□ 1.3
SMC4-209ENST00000468653 SETDB2Q96T68 719 aa23.15■■□□□ 1.3
SMC4-209ENST00000468653 TUBGCP6Q96RT7 1819 aa23.15■■□□□ 1.3
SMC4-209ENST00000468653 ADRA2BP18089 450 aa23.14■■□□□ 1.3
SMC4-209ENST00000468653 TXNRD1Q16881 649 aa23.14■■□□□ 1.3
SMC4-209ENST00000468653 POTEAQ6S8J7 498 aa23.14■■□□□ 1.3
SMC4-209ENST00000468653 APBA3O96018 575 aa23.14■■□□□ 1.29
SMC4-209ENST00000468653 GTF2E1P29083 439 aaPredicted RBP23.14■■□□□ 1.29
SMC4-209ENST00000468653 LDHAL6AQ6ZMR3 332 aa23.14■■□□□ 1.29
SMC4-209ENST00000468653 DBNLQ9UJU6 430 aaKnown RBP23.14■■□□□ 1.29
SMC4-209ENST00000468653 CCDC152Q4G0S7 254 aa23.13■■□□□ 1.29
SMC4-209ENST00000468653 NEUROD6Q96NK8 337 aa23.13■■□□□ 1.29
SMC4-209ENST00000468653 NYXQ9GZU5 481 aa23.13■■□□□ 1.29
SMC4-209ENST00000468653 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.12■■□□□ 1.29
SMC4-209ENST00000468653 CHMLP26374 656 aa23.12■■□□□ 1.29
SMC4-209ENST00000468653 ERFEQ4G0M1 354 aa23.12■■□□□ 1.29
SMC4-209ENST00000468653 DBNDD2Q9BQY9 259 aa23.12■■□□□ 1.29
SMC4-209ENST00000468653 CNNM1Q9NRU3 951 aa23.12■■□□□ 1.29
SMC4-209ENST00000468653 PLSCR1O15162 318 aa23.12■■□□□ 1.29
SMC4-209ENST00000468653 PROM2Q8N271 834 aa23.11■■□□□ 1.29
SMC4-209ENST00000468653 BOLA2Q9H3K6 86 aa23.11■■□□□ 1.29
SMC4-209ENST00000468653 AKAP2Q9Y2D5 859 aa23.11■■□□□ 1.29
SMC4-209ENST00000468653 REC8O95072 547 aa23.1■■□□□ 1.29
SMC4-209ENST00000468653 RBM25P49756 843 aaKnown RBP23.1■■□□□ 1.29
SMC4-209ENST00000468653 TIMM10P62072 90 aa23.1■■□□□ 1.29
SMC4-209ENST00000468653 NBPF5PQ86XG9 351 aaPredicted RBP23.1■■□□□ 1.29
SMC4-209ENST00000468653 RIPOR2Q9Y4F9 1068 aa23.1■■□□□ 1.29
SMC4-209ENST00000468653 ATP5JP18859 108 aa23.09■■□□□ 1.29
SMC4-209ENST00000468653 METTL24Q5JXM2 366 aa23.09■■□□□ 1.29
SMC4-209ENST00000468653 EVI5LQ96CN4 794 aa23.09■■□□□ 1.29
SMC4-209ENST00000468653 ESYT1Q9BSJ8 1104 aa23.09■■□□□ 1.29
SMC4-209ENST00000468653 SSFA2P28290 1259 aa23.09■■□□□ 1.29
SMC4-209ENST00000468653 DDX60Q8IY21 1712 aaKnown RBP23.08■■□□□ 1.29
SMC4-209ENST00000468653 A0A1B0GUL7 405 aa23.08■■□□□ 1.29
SMC4-209ENST00000468653 ZNF609O15014 1411 aa23.08■■□□□ 1.29
SMC4-209ENST00000468653 C4AP0C0L4 1744 aa23.08■■□□□ 1.29
SMC4-209ENST00000468653 TPTE2Q6XPS3 522 aa23.08■■□□□ 1.29
SMC4-209ENST00000468653 RTL9Q8NET4 1388 aa23.07■■□□□ 1.28
SMC4-209ENST00000468653 LAMB2P55268 1798 aa23.07■■□□□ 1.28
SMC4-209ENST00000468653 EP400Q96L91 3159 aa23.07■■□□□ 1.28
SMC4-209ENST00000468653 AK9Q5TCS8 1911 aa23.07■■□□□ 1.28
SMC4-209ENST00000468653 MSH5O43196 834 aa23.06■■□□□ 1.28
SMC4-209ENST00000468653 SLC10A5Q5PT55 438 aa23.06■■□□□ 1.28
SMC4-209ENST00000468653 MPHOSPH8Q99549 860 aa23.06■■□□□ 1.28
SMC4-209ENST00000468653 SEC31BQ9NQW1 1179 aa23.06■■□□□ 1.28
SMC4-209ENST00000468653 DAXXQ9UER7 740 aaPredicted RBP23.06■■□□□ 1.28
SMC4-209ENST00000468653 UBR3Q6ZT12 1888 aa23.06■■□□□ 1.28
SMC4-209ENST00000468653 NPHP1O15259 732 aa23.06■■□□□ 1.28
SMC4-209ENST00000468653 USP26Q9BXU7 913 aa23.06■■□□□ 1.28
SMC4-209ENST00000468653 IGHMBP2P38935 993 aaKnown RBP23.05■■□□□ 1.28
SMC4-209ENST00000468653 RIC1Q4ADV7 1423 aa23.05■■□□□ 1.28
SMC4-209ENST00000468653 SF3B3Q15393 1217 aaKnown RBP23.04■■□□□ 1.28
SMC4-209ENST00000468653 GORABQ5T7V8 394 aa23.04■■□□□ 1.28
SMC4-209ENST00000468653 DIAPH3Q9NSV4 1193 aa23.04■■□□□ 1.28
SMC4-209ENST00000468653 MROH5Q6ZUA9 1318 aa23.04■■□□□ 1.28
SMC4-209ENST00000468653 NFIXQ14938 502 aa23.04■■□□□ 1.28
SMC4-209ENST00000468653 ATP2B3Q16720 1220 aa23.04■■□□□ 1.28
SMC4-209ENST00000468653 CDC5LQ99459 802 aaKnown RBP23.04■■□□□ 1.28
SMC4-209ENST00000468653 CARMIL3Q8ND23 1372 aa23.03■■□□□ 1.28
SMC4-209ENST00000468653 ABCC12Q96J65 1359 aa23.03■■□□□ 1.28
SMC4-209ENST00000468653 COL24A1Q17RW2 1714 aa23.03■■□□□ 1.28
SMC4-209ENST00000468653 NLRP3Q96P20 1036 aa23.03■■□□□ 1.28
SMC4-209ENST00000468653 GYS1P13807 737 aa23.02■■□□□ 1.28
SMC4-209ENST00000468653 CCDC158Q5M9N0 1113 aa23.02■■□□□ 1.28
SMC4-209ENST00000468653 C3orf67Q6ZVT6 689 aa23.02■■□□□ 1.28
SMC4-209ENST00000468653 RUFY2Q8WXA3 655 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms