RNA–Protein interactions for RNA: ENST00000466100.1

VCP-204, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 508 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-204ENST00000466100 CTSWP56202 376 aa13.97□□□□□ -0.17
VCP-204ENST00000466100 ST5P78524 1137 aa13.97□□□□□ -0.17
VCP-204ENST00000466100 ERICH6BQ5W0A0 696 aa13.97□□□□□ -0.17
VCP-204ENST00000466100 SIRT2Q8IXJ6 389 aa13.97□□□□□ -0.17
VCP-204ENST00000466100 HDAC5Q9UQL6 1122 aa13.97□□□□□ -0.17
VCP-204ENST00000466100 SF3B3Q15393 1217 aaKnown RBP13.96□□□□□ -0.17
VCP-204ENST00000466100 CRY2Q49AN0 593 aa13.96□□□□□ -0.17
VCP-204ENST00000466100 TTLL11Q8NHH1 800 aa13.96□□□□□ -0.17
VCP-204ENST00000466100 LRRC37AA6NMS7 1700 aa13.95□□□□□ -0.18
VCP-204ENST00000466100 HSP90B1P14625 803 aaKnown RBP13.95□□□□□ -0.18
VCP-204ENST00000466100 POLD1P28340 1107 aa13.95□□□□□ -0.18
VCP-204ENST00000466100 GTF2E1P29083 439 aaPredicted RBP13.95□□□□□ -0.18
VCP-204ENST00000466100 LMBR1LQ6UX01 489 aa13.95□□□□□ -0.18
VCP-204ENST00000466100 BRIP1Q9BX63 1249 aa13.95□□□□□ -0.18
VCP-204ENST00000466100 PNMA6EA0A0J9YXQ4 647 aa13.94□□□□□ -0.18
VCP-204ENST00000466100 RFX5P48382 616 aaPredicted RBP13.94□□□□□ -0.18
VCP-204ENST00000466100 ATP8B2P98198 1209 aa13.94□□□□□ -0.18
VCP-204ENST00000466100 POLA2Q14181 598 aa13.94□□□□□ -0.18
VCP-204ENST00000466100 FAM161AQ3B820 660 aa13.94□□□□□ -0.18
VCP-204ENST00000466100 RPAP2Q8IXW5 612 aaPredicted RBP13.94□□□□□ -0.18
VCP-204ENST00000466100 SSH3Q8TE77 659 aa13.94□□□□□ -0.18
VCP-204ENST00000466100 SPON1Q9HCB6 807 aa13.94□□□□□ -0.18
VCP-204ENST00000466100 NPHP1O15259 732 aa13.93□□□□□ -0.18
VCP-204ENST00000466100 NLRP3Q96P20 1036 aa13.93□□□□□ -0.18
VCP-204ENST00000466100 GREM2Q9H772 168 aa13.93□□□□□ -0.18
VCP-204ENST00000466100 SLX4Q8IY92 1834 aa13.92□□□□□ -0.18
VCP-204ENST00000466100 LTBP1Q14766 1721 aa13.91□□□□□ -0.18
VCP-204ENST00000466100 SRGAP3O43295 1099 aa13.91□□□□□ -0.18
VCP-204ENST00000466100 HOXA10P31260 410 aaPredicted RBP13.91□□□□□ -0.18
VCP-204ENST00000466100 HDAC1Q13547 482 aaPredicted RBP13.91□□□□□ -0.18
VCP-204ENST00000466100 CCDC152Q4G0S7 254 aa13.91□□□□□ -0.18
VCP-204ENST00000466100 CCDC85AQ96PX6 553 aaPredicted RBP13.91□□□□□ -0.18
VCP-204ENST00000466100 SRGNP10124 158 aa13.9□□□□□ -0.18
VCP-204ENST00000466100 ITGA6P23229 1130 aa13.9□□□□□ -0.18
VCP-204ENST00000466100 PDE6BP35913 854 aa13.9□□□□□ -0.18
VCP-204ENST00000466100 PTPN12Q05209 780 aaKnown RBP13.9□□□□□ -0.18
VCP-204ENST00000466100 SEC31BQ9NQW1 1179 aa13.9□□□□□ -0.18
VCP-204ENST00000466100 COPRSQ9NQ92 184 aa13.89□□□□□ -0.19
VCP-204ENST00000466100 PDZRN3Q9UPQ7 1066 aa13.89□□□□□ -0.19
VCP-204ENST00000466100 ARFGEF1Q9Y6D6 1849 aa13.89□□□□□ -0.19
VCP-204ENST00000466100 UTRNP46939 3433 aa13.89□□□□□ -0.19
VCP-204ENST00000466100 ANKRD18BA2A2Z9 1011 aa13.88□□□□□ -0.19
VCP-204ENST00000466100 HMMRO75330 724 aa13.88□□□□□ -0.19
VCP-204ENST00000466100 IGHDP01880 384 aa13.88□□□□□ -0.19
VCP-204ENST00000466100 NPR1P16066 1061 aa13.88□□□□□ -0.19
VCP-204ENST00000466100 KCNA3P22001 575 aa13.88□□□□□ -0.19
VCP-204ENST00000466100 CHRNA5P30532 468 aa13.88□□□□□ -0.19
VCP-204ENST00000466100 IFIT5Q13325 482 aaKnown RBP13.88□□□□□ -0.19
VCP-204ENST00000466100 C2CD5Q86YS7 1000 aa13.88□□□□□ -0.19
VCP-204ENST00000466100 KLHDC4Q8TBB5 520 aa13.88□□□□□ -0.19
VCP-204ENST00000466100 CELF1Q92879 486 aaKnown RBP13.88□□□□□ -0.19
VCP-204ENST00000466100 ZNF594Q96JF6 807 aaPredicted RBP13.88□□□□□ -0.19
VCP-204ENST00000466100 PPP4R2Q9NY27 417 aa13.88□□□□□ -0.19
VCP-204ENST00000466100 PA2G4Q9UQ80 394 aaKnown RBP13.88□□□□□ -0.19
VCP-204ENST00000466100 NOP58Q9Y2X3 529 aaKnown RBP13.88□□□□□ -0.19
VCP-204ENST00000466100 CHMP3Q9Y3E7 222 aa13.88□□□□□ -0.19
VCP-204ENST00000466100 CD2APQ9Y5K6 639 aa13.88□□□□□ -0.19
VCP-204ENST00000466100 ARAP2Q8WZ64 1704 aa13.87□□□□□ -0.19
VCP-204ENST00000466100 CCDC57Q2TAC2 916 aa13.87□□□□□ -0.19
VCP-204ENST00000466100 STYK1Q6J9G0 422 aa13.87□□□□□ -0.19
VCP-204ENST00000466100 RPGRQ92834 1020 aaKnown RBP13.87□□□□□ -0.19
VCP-204ENST00000466100 MASTLQ96GX5 879 aa13.87□□□□□ -0.19
VCP-204ENST00000466100 CRAMP1Q96RY5 1269 aa13.87□□□□□ -0.19
VCP-204ENST00000466100 KDM2BQ8NHM5 1336 aa13.87□□□□□ -0.19
VCP-204ENST00000466100 H0YIN7 160 aa13.86□□□□□ -0.19
VCP-204ENST00000466100 DPEP1P16444 411 aa13.86□□□□□ -0.19
VCP-204ENST00000466100 TGFB2P61812 414 aa13.86□□□□□ -0.19
VCP-204ENST00000466100 GRAPQ13588 217 aa13.86□□□□□ -0.19
VCP-204ENST00000466100 DDX46Q7L014 1031 aaKnown RBP13.86□□□□□ -0.19
VCP-204ENST00000466100 ATG9AQ7Z3C6 839 aa13.86□□□□□ -0.19
VCP-204ENST00000466100 GRAPLQ8TC17 118 aaPredicted RBP13.86□□□□□ -0.19
VCP-204ENST00000466100 RBM17Q96I25 401 aaKnown RBP13.86□□□□□ -0.19
VCP-204ENST00000466100 CDC5LQ99459 802 aaKnown RBP13.86□□□□□ -0.19
VCP-204ENST00000466100 DCTPP1Q9H773 170 aa13.86□□□□□ -0.19
VCP-204ENST00000466100 GTF3C3Q9Y5Q9 886 aa13.86□□□□□ -0.19
VCP-204ENST00000466100 SNED1Q8TER0 1413 aa13.85□□□□□ -0.19
VCP-204ENST00000466100 CIAO1O76071 339 aa13.85□□□□□ -0.19
VCP-204ENST00000466100 SLC51AQ86UW1 340 aa13.85□□□□□ -0.19
VCP-204ENST00000466100 SMC5Q8IY18 1101 aa13.85□□□□□ -0.19
VCP-204ENST00000466100 PUS3Q9BZE2 481 aaKnown RBP13.85□□□□□ -0.19
VCP-204ENST00000466100 RWDD1Q9H446 243 aaPredicted RBP13.85□□□□□ -0.19
VCP-204ENST00000466100 FBXO3Q9UK99 471 aa13.85□□□□□ -0.19
VCP-204ENST00000466100 DUOX1Q9NRD9 1551 aa13.84□□□□□ -0.19
VCP-204ENST00000466100 EYA2O00167 538 aa13.84□□□□□ -0.19
VCP-204ENST00000466100 RPS8P62241 208 aaKnown RBP13.84□□□□□ -0.19
VCP-204ENST00000466100 LRRC24Q50LG9 513 aa13.84□□□□□ -0.19
VCP-204ENST00000466100 ANKRD18AQ8IVF6 992 aa13.84□□□□□ -0.19
VCP-204ENST00000466100 NLGN2Q8NFZ4 835 aa13.84□□□□□ -0.19
VCP-204ENST00000466100 SIL1Q9H173 461 aa13.84□□□□□ -0.19
VCP-204ENST00000466100 BSDC1Q9NW68 430 aaPredicted RBP13.84□□□□□ -0.19
VCP-204ENST00000466100 EXOC6BQ9Y2D4 811 aa13.84□□□□□ -0.19
VCP-204ENST00000466100 RIPOR2Q9Y4F9 1068 aa13.84□□□□□ -0.19
VCP-204ENST00000466100 FER1L6Q2WGJ9 1857 aa13.84□□□□□ -0.19
VCP-204ENST00000466100 A0A0G2JLW4 131 aa13.83□□□□□ -0.2
VCP-204ENST00000466100 SURF6O75683 361 aaKnown RBP13.83□□□□□ -0.2
VCP-204ENST00000466100 IGHMBP2P38935 993 aaKnown RBP13.83□□□□□ -0.2
VCP-204ENST00000466100 B4GALNT3Q6L9W6 998 aa13.83□□□□□ -0.2
VCP-204ENST00000466100 CCDC136Q96JN2 1154 aa13.83□□□□□ -0.2
VCP-204ENST00000466100 FHDC1Q9C0D6 1143 aaPredicted RBP13.83□□□□□ -0.2
VCP-204ENST00000466100 BBOX1O75936 387 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms