RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 PI4KAP1Q8N8J0 262 aa23.21■■□□□ 1.31
SDF4-205ENST00000465727 MED1Q15648 1581 aaPredicted RBP23.2■■□□□ 1.31
SDF4-205ENST00000465727 KDM3BQ7LBC6 1761 aa23.2■■□□□ 1.3
SDF4-205ENST00000465727 KRT32Q14532 448 aa23.2■■□□□ 1.3
SDF4-205ENST00000465727 MYH15Q9Y2K3 1946 aa23.2■■□□□ 1.3
SDF4-205ENST00000465727 MED23Q9ULK4 1368 aa23.2■■□□□ 1.3
SDF4-205ENST00000465727 DIP2AQ14689 1571 aa23.2■■□□□ 1.3
SDF4-205ENST00000465727 GSDMDP57764 484 aa23.2■■□□□ 1.3
SDF4-205ENST00000465727 PLPPR3Q6T4P5 718 aa23.2■■□□□ 1.3
SDF4-205ENST00000465727 FAM227BQ96M60 508 aa23.2■■□□□ 1.3
SDF4-205ENST00000465727 CEMIPQ8WUJ3 1361 aa23.2■■□□□ 1.3
SDF4-205ENST00000465727 PIK3C2AO00443 1686 aa23.19■■□□□ 1.3
SDF4-205ENST00000465727 ALDH1L1O75891 902 aa23.19■■□□□ 1.3
SDF4-205ENST00000465727 SLU7O95391 586 aaKnown RBP23.19■■□□□ 1.3
SDF4-205ENST00000465727 DDX54Q8TDD1 881 aaKnown RBP23.19■■□□□ 1.3
SDF4-205ENST00000465727 AACSQ86V21 672 aa23.18■■□□□ 1.3
SDF4-205ENST00000465727 CCAR2Q8N163 923 aaKnown RBP23.18■■□□□ 1.3
SDF4-205ENST00000465727 GTF3C6Q969F1 213 aa23.18■■□□□ 1.3
SDF4-205ENST00000465727 ADCY9O60503 1353 aa23.18■■□□□ 1.3
SDF4-205ENST00000465727 CCZ1BP86790 482 aa23.18■■□□□ 1.3
SDF4-205ENST00000465727 CCZ1P86791 482 aaPredicted RBP23.18■■□□□ 1.3
SDF4-205ENST00000465727 CCDC69A6NI79 296 aa23.17■■□□□ 1.3
SDF4-205ENST00000465727 USP27XA6NNY8 438 aa23.17■■□□□ 1.3
SDF4-205ENST00000465727 BECN2A8MW95 431 aa23.17■■□□□ 1.3
SDF4-205ENST00000465727 EIF4A1P60842 406 aaKnown RBP23.17■■□□□ 1.3
SDF4-205ENST00000465727 CHPF2Q9P2E5 772 aa23.17■■□□□ 1.3
SDF4-205ENST00000465727 ADAMTS13Q76LX8 1427 aa23.17■■□□□ 1.3
SDF4-205ENST00000465727 TUBB4AP04350 444 aa23.17■■□□□ 1.3
SDF4-205ENST00000465727 DHX8Q14562 1220 aaKnown RBP23.17■■□□□ 1.3
SDF4-205ENST00000465727 FBXO38Q6PIJ6 1188 aa23.17■■□□□ 1.3
SDF4-205ENST00000465727 ANO10Q9NW15 660 aa23.17■■□□□ 1.3
SDF4-205ENST00000465727 C11orf57Q6ZUT1 292 aaPredicted RBP23.16■■□□□ 1.3
SDF4-205ENST00000465727 H3BQV1 296 aa23.15■■□□□ 1.3
SDF4-205ENST00000465727 EIF2S2P20042 333 aaKnown RBP23.15■■□□□ 1.3
SDF4-205ENST00000465727 IFFO2Q5TF58 517 aa23.15■■□□□ 1.3
SDF4-205ENST00000465727 ATL3Q6DD88 541 aa23.15■■□□□ 1.3
SDF4-205ENST00000465727 IMPACTQ9P2X3 320 aa23.15■■□□□ 1.3
SDF4-205ENST00000465727 USP54Q70EL1 1684 aa23.15■■□□□ 1.3
SDF4-205ENST00000465727 HOXC9P31274 260 aa23.15■■□□□ 1.3
SDF4-205ENST00000465727 BRF1Q92994 677 aa23.15■■□□□ 1.3
SDF4-205ENST00000465727 A0A0D9SFI3 127 aa23.14■■□□□ 1.29
SDF4-205ENST00000465727 ELF2Q15723 593 aa23.14■■□□□ 1.29
SDF4-205ENST00000465727 USPL1Q5W0Q7 1092 aa23.14■■□□□ 1.29
SDF4-205ENST00000465727 TMEM2Q9UHN6 1383 aa23.14■■□□□ 1.29
SDF4-205ENST00000465727 KCNJ6P48051 423 aa23.13■■□□□ 1.29
SDF4-205ENST00000465727 CEBPAP49715 358 aaPredicted RBP23.13■■□□□ 1.29
SDF4-205ENST00000465727 FGD1P98174 961 aa23.13■■□□□ 1.29
SDF4-205ENST00000465727 FSD1Q9BTV5 496 aa23.13■■□□□ 1.29
SDF4-205ENST00000465727 NAT10Q9H0A0 1025 aaKnown RBP23.13■■□□□ 1.29
SDF4-205ENST00000465727 OSBPL5Q9H0X9 879 aaPredicted RBP23.13■■□□□ 1.29
SDF4-205ENST00000465727 L2HGDHQ9H9P8 463 aa23.13■■□□□ 1.29
SDF4-205ENST00000465727 C9orf78Q9NZ63 289 aaPredicted RBP23.13■■□□□ 1.29
SDF4-205ENST00000465727 RCOR1Q9UKL0 485 aa23.13■■□□□ 1.29
SDF4-205ENST00000465727 SLIT1O75093 1534 aa23.13■■□□□ 1.29
SDF4-205ENST00000465727 NUTM2FA1L443 756 aa23.13■■□□□ 1.29
SDF4-205ENST00000465727 STK3Q13188 491 aa23.13■■□□□ 1.29
SDF4-205ENST00000465727 CCDC73Q6ZRK6 1079 aa23.13■■□□□ 1.29
SDF4-205ENST00000465727 CEP57L1Q8IYX8 460 aa23.13■■□□□ 1.29
SDF4-205ENST00000465727 TCEANC2Q96MN5 208 aa23.13■■□□□ 1.29
SDF4-205ENST00000465727 LLPHQ9BRT6 129 aaKnown RBP23.13■■□□□ 1.29
SDF4-205ENST00000465727 BMS1Q14692 1282 aaKnown RBP23.12■■□□□ 1.29
SDF4-205ENST00000465727 ARID5BQ14865 1188 aa23.12■■□□□ 1.29
SDF4-205ENST00000465727 NAA16Q6N069 864 aaPredicted RBP23.12■■□□□ 1.29
SDF4-205ENST00000465727 DHX40Q8IX18 779 aaKnown RBP23.12■■□□□ 1.29
SDF4-205ENST00000465727 COL9A3Q14050 684 aaPredicted RBP23.12■■□□□ 1.29
SDF4-205ENST00000465727 CALCOCO1Q9P1Z2 691 aa23.12■■□□□ 1.29
SDF4-205ENST00000465727 USP16Q9Y5T5 823 aa23.12■■□□□ 1.29
SDF4-205ENST00000465727 UBR1Q8IWV7 1749 aa23.11■■□□□ 1.29
SDF4-205ENST00000465727 KINO60870 393 aaKnown RBP23.11■■□□□ 1.29
SDF4-205ENST00000465727 FILIP1Q7Z7B0 1213 aa23.11■■□□□ 1.29
SDF4-205ENST00000465727 CCAR1Q8IX12 1150 aaKnown RBP23.11■■□□□ 1.29
SDF4-205ENST00000465727 DBF4Q9UBU7 674 aaPredicted RBP23.11■■□□□ 1.29
SDF4-205ENST00000465727 ERBB3P21860 1342 aa23.11■■□□□ 1.29
SDF4-205ENST00000465727 JAK2O60674 1132 aa23.1■■□□□ 1.29
SDF4-205ENST00000465727 H2AFXP16104 143 aaPredicted RBP23.1■■□□□ 1.29
SDF4-205ENST00000465727 TIGD1Q96MW7 591 aa23.1■■□□□ 1.29
SDF4-205ENST00000465727 PA2G4Q9UQ80 394 aaKnown RBP23.1■■□□□ 1.29
SDF4-205ENST00000465727 PSDA5PKW4 1024 aaPredicted RBP23.1■■□□□ 1.29
SDF4-205ENST00000465727 FAM160A1Q05DH4 1040 aa23.1■■□□□ 1.29
SDF4-205ENST00000465727 G3BP1Q13283 466 aaKnown RBP eCLIP23.1■■□□□ 1.29
SDF4-205ENST00000465727 CCDC150Q8NCX0 1101 aa23.1■■□□□ 1.29
SDF4-205ENST00000465727 SMARCC2Q8TAQ2 1214 aa23.1■■□□□ 1.29
SDF4-205ENST00000465727 EAF2Q96CJ1 260 aaPredicted RBP23.1■■□□□ 1.29
SDF4-205ENST00000465727 NEK1Q96PY6 1258 aa23.1■■□□□ 1.29
SDF4-205ENST00000465727 LMTK3Q96Q04 1460 aa23.09■■□□□ 1.29
SDF4-205ENST00000465727 TAF5LO75529 589 aa23.09■■□□□ 1.29
SDF4-205ENST00000465727 ADD1P35611 737 aaKnown RBP23.09■■□□□ 1.29
SDF4-205ENST00000465727 SNW1Q13573 536 aaKnown RBP23.09■■□□□ 1.29
SDF4-205ENST00000465727 RFX7Q2KHR2 1363 aa23.09■■□□□ 1.29
SDF4-205ENST00000465727 SASH1O94885 1247 aa23.09■■□□□ 1.29
SDF4-205ENST00000465727 NUTM2GQ5VZR2 741 aa23.09■■□□□ 1.29
SDF4-205ENST00000465727 NGDNQ8NEJ9 315 aaKnown RBP23.09■■□□□ 1.29
SDF4-205ENST00000465727 TRMT1Q9NXH9 659 aaKnown RBP23.09■■□□□ 1.29
SDF4-205ENST00000465727 NOL12Q9UGY1 213 aaKnown RBP eCLIP23.09■■□□□ 1.295e-12■□□□□ 10
SDF4-205ENST00000465727 MARF1Q9Y4F3 1742 aaKnown RBP23.09■■□□□ 1.29
SDF4-205ENST00000465727 V9GYY5 206 aaPredicted RBP23.09■■□□□ 1.29
SDF4-205ENST00000465727 MRC1P22897 1456 aa23.08■■□□□ 1.29
SDF4-205ENST00000465727 PLEKHG1Q9ULL1 1385 aa23.08■■□□□ 1.29
SDF4-205ENST00000465727 ENGASEQ8NFI3 743 aa23.08■■□□□ 1.29
SDF4-205ENST00000465727 ZNF396Q96N95 335 aaPredicted RBP23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms