RNA–Protein interactions for RNA: ENST00000465525.6

PTPRU-206, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 2

Gene PTPRU, Length 1,650 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-206ENST00000465525 SSH3Q8TE77 659 aa21.44■■□□□ 1.02
PTPRU-206ENST00000465525 HMMRO75330 724 aa21.44■■□□□ 1.02
PTPRU-206ENST00000465525 HSP90B1P14625 803 aaKnown RBP21.44■■□□□ 1.02
PTPRU-206ENST00000465525 POLA2Q14181 598 aa21.44■■□□□ 1.02
PTPRU-206ENST00000465525 FAM161AQ3B820 660 aa21.44■■□□□ 1.02
PTPRU-206ENST00000465525 SLC10A5Q5PT55 438 aa21.44■■□□□ 1.02
PTPRU-206ENST00000465525 KLHDC4Q8TBB5 520 aa21.44■■□□□ 1.02
PTPRU-206ENST00000465525 SGIP1Q9BQI5 828 aa21.44■■□□□ 1.02
PTPRU-206ENST00000465525 NRXN2Q9P2S2 1712 aa21.43■■□□□ 1.02
PTPRU-206ENST00000465525 ST5P78524 1137 aa21.43■■□□□ 1.02
PTPRU-206ENST00000465525 CENPQQ7L2Z9 268 aaPredicted RBP21.43■■□□□ 1.02
PTPRU-206ENST00000465525 TTLL11Q8NHH1 800 aa21.43■■□□□ 1.02
PTPRU-206ENST00000465525 PA2G4Q9UQ80 394 aaKnown RBP21.43■■□□□ 1.02
PTPRU-206ENST00000465525 TAF1P21675 1872 aa21.42■■□□□ 1.02
PTPRU-206ENST00000465525 SPEF2Q9C093 1822 aa21.42■■□□□ 1.02
PTPRU-206ENST00000465525 APBB1O00213 710 aa21.42■■□□□ 1.02
PTPRU-206ENST00000465525 PTGER2P43116 358 aa21.42■■□□□ 1.02
PTPRU-206ENST00000465525 EXOC6BQ9Y2D4 811 aa21.42■■□□□ 1.02
PTPRU-206ENST00000465525 ANKRD31Q8N7Z5 1873 aa21.42■■□□□ 1.02
PTPRU-206ENST00000465525 GREM2Q9H772 168 aa21.41■■□□□ 1.02
PTPRU-206ENST00000465525 CSF1RP07333 972 aa21.4■■□□□ 1.02
PTPRU-206ENST00000465525 BCL11AQ9H165 835 aa21.4■■□□□ 1.02
PTPRU-206ENST00000465525 RFX5P48382 616 aaPredicted RBP21.4■■□□□ 1.02
PTPRU-206ENST00000465525 SKAP1Q86WV1 359 aa21.4■■□□□ 1.02
PTPRU-206ENST00000465525 ZNF594Q96JF6 807 aaPredicted RBP21.4■■□□□ 1.02
PTPRU-206ENST00000465525 SIL1Q9H173 461 aa21.4■■□□□ 1.02
PTPRU-206ENST00000465525 SURF6O75683 361 aaKnown RBP21.39■■□□□ 1.01
PTPRU-206ENST00000465525 BRIP1Q9BX63 1249 aa21.39■■□□□ 1.01
PTPRU-206ENST00000465525 DCTPP1Q9H773 170 aa21.39■■□□□ 1.01
PTPRU-206ENST00000465525 COL4A1P02462 1669 aa21.39■■□□□ 1.01
PTPRU-206ENST00000465525 NLRP3Q96P20 1036 aa21.38■■□□□ 1.01
PTPRU-206ENST00000465525 ITGA6P23229 1130 aa21.37■■□□□ 1.01
PTPRU-206ENST00000465525 CCDC57Q2TAC2 916 aa21.37■■□□□ 1.01
PTPRU-206ENST00000465525 SMC5Q8IY18 1101 aa21.37■■□□□ 1.01
PTPRU-206ENST00000465525 SEC31BQ9NQW1 1179 aa21.37■■□□□ 1.01
PTPRU-206ENST00000465525 PTPN12Q05209 780 aaKnown RBP21.37■■□□□ 1.01
PTPRU-206ENST00000465525 IFIT5Q13325 482 aaKnown RBP21.37■■□□□ 1.01
PTPRU-206ENST00000465525 RIC1Q4ADV7 1423 aa21.37■■□□□ 1.01
PTPRU-206ENST00000465525 PDE6BP35913 854 aa21.36■■□□□ 1.01
PTPRU-206ENST00000465525 CCDC152Q4G0S7 254 aa21.36■■□□□ 1.01
PTPRU-206ENST00000465525 GCC1Q96CN9 775 aa21.36■■□□□ 1.01
PTPRU-206ENST00000465525 OS9Q13438 667 aaPredicted RBP21.35■■□□□ 1.01
PTPRU-206ENST00000465525 ANKRD18BA2A2Z9 1011 aa21.34■■□□□ 1.01
PTPRU-206ENST00000465525 KLRG2A4D1S0 409 aaPredicted RBP21.34■■□□□ 1.01
PTPRU-206ENST00000465525 SF3B3Q15393 1217 aaKnown RBP21.34■■□□□ 1.01
PTPRU-206ENST00000465525 TAF7LQ5H9L4 462 aa21.34■■□□□ 1.01
PTPRU-206ENST00000465525 ANKRD45Q5TZF3 282 aa21.34■■□□□ 1.01
PTPRU-206ENST00000465525 PDZRN3Q9UPQ7 1066 aa21.34■■□□□ 1.01
PTPRU-206ENST00000465525 SMARCA5O60264 1052 aaPredicted RBP21.34■■□□□ 1.01
PTPRU-206ENST00000465525 PUS3Q9BZE2 481 aaKnown RBP21.34■■□□□ 1.01
PTPRU-206ENST00000465525 COPRSQ9NQ92 184 aa21.34■■□□□ 1.01
PTPRU-206ENST00000465525 COL11A2P13942 1736 aaPredicted RBP21.33■■□□□ 1.01
PTPRU-206ENST00000465525 C10orf71Q711Q0 1435 aa21.33■■□□□ 1.01
PTPRU-206ENST00000465525 NOP58Q9Y2X3 529 aaKnown RBP21.33■■□□□ 1
PTPRU-206ENST00000465525 LRRC24Q50LG9 513 aa21.32■■□□□ 1
PTPRU-206ENST00000465525 CD2APQ9Y5K6 639 aa21.32■■□□□ 1
PTPRU-206ENST00000465525 G3BP1Q13283 466 aaKnown RBP eCLIP21.31■■□□□ 1
PTPRU-206ENST00000465525 CRY2Q49AN0 593 aa21.31■■□□□ 1
PTPRU-206ENST00000465525 LNPKQ9C0E8 428 aa21.31■■□□□ 1
PTPRU-206ENST00000465525 RTL9Q8NET4 1388 aa21.31■■□□□ 1
PTPRU-206ENST00000465525 NUCB1Q02818 461 aa21.31■■□□□ 1
PTPRU-206ENST00000465525 CACNA1SQ13698 1873 aa21.3■■□□□ 1
PTPRU-206ENST00000465525 H0YIN7 160 aa21.3■■□□□ 1
PTPRU-206ENST00000465525 TGFB2P61812 414 aa21.3■■□□□ 1
PTPRU-206ENST00000465525 IL1RAPL2Q9NP60 686 aa21.3■■□□□ 1
PTPRU-206ENST00000465525 PPP1R1BQ9UD71 204 aaPredicted RBP21.3■■□□□ 1
PTPRU-206ENST00000465525 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.3■■□□□ 1
PTPRU-206ENST00000465525 LRP5O75197 1615 aa21.3■■□□□ 1
PTPRU-206ENST00000465525 ATG9AQ7Z3C6 839 aa21.29■■□□□ 1
PTPRU-206ENST00000465525 CHD1LQ86WJ1 897 aa21.29■■□□□ 1
PTPRU-206ENST00000465525 RPGRQ92834 1020 aaKnown RBP21.29■■□□□ 1
PTPRU-206ENST00000465525 CELF1Q92879 486 aaKnown RBP21.29■■□□□ 1
PTPRU-206ENST00000465525 EYA2O00167 538 aa21.28■■□□□ 1
PTPRU-206ENST00000465525 RAB11FIP3O75154 756 aa21.28■■□□□ 1
PTPRU-206ENST00000465525 SASH1O94885 1247 aa21.28■■□□□ 1
PTPRU-206ENST00000465525 SRGNP10124 158 aa21.28■■□□□ 1
PTPRU-206ENST00000465525 HSP90AB4PQ58FF6 505 aa21.28■■□□□ 1
PTPRU-206ENST00000465525 LDHAL6AQ6ZMR3 332 aa21.28■■□□□ 1
PTPRU-206ENST00000465525 DDX46Q7L014 1031 aaKnown RBP21.28■■□□□ 1
PTPRU-206ENST00000465525 C2CD5Q86YS7 1000 aa21.28■■□□□ 1
PTPRU-206ENST00000465525 RHPN1Q8TCX5 695 aa21.28■■□□□ 1
PTPRU-206ENST00000465525 LRRCC1Q9C099 1032 aa21.28■■□□□ 1
PTPRU-206ENST00000465525 HOXA10P31260 410 aaPredicted RBP21.28■■□□□ 1
PTPRU-206ENST00000465525 CNNM1Q9NRU3 951 aa21.28■■□□□ 1
PTPRU-206ENST00000465525 NPR1P16066 1061 aa21.27■■□□□ 1
PTPRU-206ENST00000465525 TFCP2Q12800 502 aa21.27■■□□□ 1
PTPRU-206ENST00000465525 SLC51AQ86UW1 340 aa21.27■■□□□ 1
PTPRU-206ENST00000465525 C16orf71Q8IYS4 520 aaPredicted RBP21.27■■□□□ 1
PTPRU-206ENST00000465525 KLHL34Q8N239 644 aa21.27■■□□□ 1
PTPRU-206ENST00000465525 MASTLQ96GX5 879 aa21.27■■□□□ 1
PTPRU-206ENST00000465525 RBM17Q96I25 401 aaKnown RBP21.27■■□□□ 1
PTPRU-206ENST00000465525 CDC5LQ99459 802 aaKnown RBP21.27■■□□□ 1
PTPRU-206ENST00000465525 ZBTB47Q9UFB7 747 aaPredicted RBP21.27■■□□□ 1
PTPRU-206ENST00000465525 KIF13BQ9NQT8 1826 aa21.27■□□□□ 0.99
PTPRU-206ENST00000465525 PDE4AP27815 886 aa21.26■□□□□ 0.99
PTPRU-206ENST00000465525 IGHMBP2P38935 993 aaKnown RBP21.26■□□□□ 0.99
PTPRU-206ENST00000465525 ANKRD18AQ8IVF6 992 aa21.26■□□□□ 0.99
PTPRU-206ENST00000465525 KIF1BPQ96EK5 621 aa21.26■□□□□ 0.99
PTPRU-206ENST00000465525 A0A1B0GUL6 1792 aa21.25■□□□□ 0.99
PTPRU-206ENST00000465525 CHRNA5P30532 468 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms