RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 ZNF277Q9NRM2 450 aaPredicted RBP14.85□□□□□ -0.03
USP54-209ENST00000464635 CHPF2Q9P2E5 772 aa14.85□□□□□ -0.03
USP54-209ENST00000464635 SCN4AP35499 1836 aa14.85□□□□□ -0.03
USP54-209ENST00000464635 ELL2O00472 640 aaPredicted RBP14.84□□□□□ -0.03
USP54-209ENST00000464635 DDNO94850 711 aaPredicted RBP14.84□□□□□ -0.03
USP54-209ENST00000464635 DDX21Q9NR30 783 aaKnown RBP eCLIP14.84□□□□□ -0.03
USP54-209ENST00000464635 ZBTB40Q9NUA8 1239 aa14.84□□□□□ -0.03
USP54-209ENST00000464635 SLC4A2P04920 1241 aa14.83□□□□□ -0.04
USP54-209ENST00000464635 ALDH1B1P30837 517 aa14.83□□□□□ -0.04
USP54-209ENST00000464635 PARP10Q53GL7 1025 aa14.83□□□□□ -0.04
USP54-209ENST00000464635 HDGFL1Q5TGJ6 251 aa14.83□□□□□ -0.04
USP54-209ENST00000464635 DPY19L2Q6NUT2 758 aa14.83□□□□□ -0.04
USP54-209ENST00000464635 SMC1BQ8NDV3 1235 aa14.83□□□□□ -0.04
USP54-209ENST00000464635 RPGRQ92834 1020 aaKnown RBP14.83□□□□□ -0.04
USP54-209ENST00000464635 ZNF541Q9H0D2 1346 aa14.83□□□□□ -0.04
USP54-209ENST00000464635 ZBTB7BO15156 539 aaPredicted RBP14.82□□□□□ -0.04
USP54-209ENST00000464635 HOXA10P31260 410 aaPredicted RBP14.82□□□□□ -0.04
USP54-209ENST00000464635 HDAC1Q13547 482 aaPredicted RBP14.82□□□□□ -0.04
USP54-209ENST00000464635 PPP1R42Q7Z4L9 355 aa14.82□□□□□ -0.04
USP54-209ENST00000464635 SYNE4Q8N205 404 aa14.82□□□□□ -0.04
USP54-209ENST00000464635 DNAJC5GQ8N7S2 189 aa14.82□□□□□ -0.04
USP54-209ENST00000464635 UTP14AQ9BVJ6 771 aaKnown RBP14.82□□□□□ -0.04
USP54-209ENST00000464635 RWDD1Q9H446 243 aaPredicted RBP14.82□□□□□ -0.04
USP54-209ENST00000464635 COL4A1P02462 1669 aa14.81□□□□□ -0.04
USP54-209ENST00000464635 ADAMTSL1Q8N6G6 1762 aa14.81□□□□□ -0.04
USP54-209ENST00000464635 TCERG1O14776 1098 aaKnown RBP14.81□□□□□ -0.04
USP54-209ENST00000464635 POTEIP0CG38 1075 aa14.81□□□□□ -0.04
USP54-209ENST00000464635 POTEJP0CG39 1038 aa14.81□□□□□ -0.04
USP54-209ENST00000464635 NLRP10Q86W26 655 aa14.81□□□□□ -0.04
USP54-209ENST00000464635 RTKN2Q8IZC4 609 aa14.81□□□□□ -0.04
USP54-209ENST00000464635 TMEM57Q8N5G2 664 aa14.81□□□□□ -0.04
USP54-209ENST00000464635 LRRC37AA6NMS7 1700 aa14.8□□□□□ -0.04
USP54-209ENST00000464635 LTBP1Q14766 1721 aa14.8□□□□□ -0.04
USP54-209ENST00000464635 PPEF1O14829 653 aaPredicted RBP14.8□□□□□ -0.04
USP54-209ENST00000464635 IARSP41252 1262 aaKnown RBP14.8□□□□□ -0.04
USP54-209ENST00000464635 CCT4P50991 539 aaKnown RBP14.8□□□□□ -0.04
USP54-209ENST00000464635 TCIRG1Q13488 830 aa14.8□□□□□ -0.04
USP54-209ENST00000464635 CRAMP1Q96RY5 1269 aa14.8□□□□□ -0.04
USP54-209ENST00000464635 HCLS1P14317 486 aaPredicted RBP14.79□□□□□ -0.04
USP54-209ENST00000464635 HSP90AB3PQ58FF7 597 aa14.79□□□□□ -0.04
USP54-209ENST00000464635 SLC10A5Q5PT55 438 aa14.79□□□□□ -0.04
USP54-209ENST00000464635 ITPRIPQ8IWB1 547 aa14.79□□□□□ -0.04
USP54-209ENST00000464635 RBM17Q96I25 401 aaKnown RBP14.79□□□□□ -0.04
USP54-209ENST00000464635 DBF4Q9UBU7 674 aaPredicted RBP14.79□□□□□ -0.04
USP54-209ENST00000464635 PLBD2Q8NHP8 589 aa14.78□□□□□ -0.04
USP54-209ENST00000464635 NLRP3Q96P20 1036 aa14.78□□□□□ -0.04
USP54-209ENST00000464635 PSMD1Q99460 953 aa14.78□□□□□ -0.04
USP54-209ENST00000464635 ATP5J2-PTCD1G3V325 749 aa14.77□□□□□ -0.05
USP54-209ENST00000464635 FLIIQ13045 1269 aa14.77□□□□□ -0.05
USP54-209ENST00000464635 L3MBTL3Q96JM7 780 aaPredicted RBP14.77□□□□□ -0.05
USP54-209ENST00000464635 HYPKQ9NX55 129 aa14.77□□□□□ -0.05
USP54-209ENST00000464635 TRMT112Q9UI30 125 aaKnown RBP14.77□□□□□ -0.05
USP54-209ENST00000464635 TNNQ9UQP3 1299 aa14.77□□□□□ -0.05
USP54-209ENST00000464635 DUOX1Q9NRD9 1551 aa14.77□□□□□ -0.05
USP54-209ENST00000464635 SH3TC1Q8TE82 1336 aa14.76□□□□□ -0.05
USP54-209ENST00000464635 FZD9O00144 591 aa14.76□□□□□ -0.05
USP54-209ENST00000464635 CC2D2BQ6DHV5 1058 aa14.76□□□□□ -0.05
USP54-209ENST00000464635 ANKRD13DQ6ZTN6 518 aa14.76□□□□□ -0.05
USP54-209ENST00000464635 KLRG1Q96E93 195 aa14.76□□□□□ -0.05
USP54-209ENST00000464635 ISCA1Q9BUE6 129 aa14.76□□□□□ -0.05
USP54-209ENST00000464635 PCDHB15Q9Y5E8 787 aa14.76□□□□□ -0.05
USP54-209ENST00000464635 RPAP2Q8IXW5 612 aaPredicted RBP14.75□□□□□ -0.05
USP54-209ENST00000464635 TAF1DQ9H5J8 278 aaPredicted RBP14.75□□□□□ -0.05
USP54-209ENST00000464635 PHAXQ9H814 394 aaKnown RBP14.75□□□□□ -0.05
USP54-209ENST00000464635 IQCA1LA6NCM1 817 aa14.74□□□□□ -0.05
USP54-209ENST00000464635 CHADLQ6NUI6 762 aa14.74□□□□□ -0.05
USP54-209ENST00000464635 ATP6V0A2Q9Y487 856 aa14.74□□□□□ -0.05
USP54-209ENST00000464635 IGHDP01880 384 aa14.73□□□□□ -0.05
USP54-209ENST00000464635 RTL5Q5HYW3 569 aaPredicted RBP14.73□□□□□ -0.05
USP54-209ENST00000464635 SMC5Q8IY18 1101 aa14.73□□□□□ -0.05
USP54-209ENST00000464635 LARGE2Q8N3Y3 721 aa14.73□□□□□ -0.05
USP54-209ENST00000464635 JDP2Q8WYK2 163 aa14.73□□□□□ -0.05
USP54-209ENST00000464635 FAM89AQ96GI7 184 aa14.73□□□□□ -0.05
USP54-209ENST00000464635 HDAC5Q9UQL6 1122 aa14.73□□□□□ -0.05
USP54-209ENST00000464635 SPEF2Q9C093 1822 aa14.73□□□□□ -0.05
USP54-209ENST00000464635 GNAI3P08754 354 aa14.72□□□□□ -0.05
USP54-209ENST00000464635 AOC3Q16853 763 aa14.72□□□□□ -0.05
USP54-209ENST00000464635 EAPPQ56P03 285 aaPredicted RBP14.72□□□□□ -0.05
USP54-209ENST00000464635 GCC1Q96CN9 775 aa14.72□□□□□ -0.05
USP54-209ENST00000464635 HACL1Q9UJ83 578 aa14.72□□□□□ -0.05
USP54-209ENST00000464635 GJA3Q9Y6H8 435 aa14.72□□□□□ -0.05
USP54-209ENST00000464635 MYH3P11055 1940 aa14.71□□□□□ -0.05
USP54-209ENST00000464635 PPIP5K2O43314 1243 aa14.71□□□□□ -0.05
USP54-209ENST00000464635 DDX58O95786 925 aaKnown RBP14.71□□□□□ -0.05
USP54-209ENST00000464635 EPHX2P34913 555 aa14.71□□□□□ -0.05
USP54-209ENST00000464635 FKBP5Q13451 457 aaPredicted RBP14.71□□□□□ -0.05
USP54-209ENST00000464635 GRAPQ13588 217 aa14.71□□□□□ -0.05
USP54-209ENST00000464635 GRIPAP1Q4V328 841 aa14.71□□□□□ -0.05
USP54-209ENST00000464635 DDX46Q7L014 1031 aaKnown RBP14.71□□□□□ -0.05
USP54-209ENST00000464635 G2E3Q7L622 706 aa14.71□□□□□ -0.05
USP54-209ENST00000464635 LDHDQ86WU2 507 aa14.71□□□□□ -0.05
USP54-209ENST00000464635 GPC2Q8N158 579 aa14.71□□□□□ -0.05
USP54-209ENST00000464635 JMYQ8N9B5 988 aa14.71□□□□□ -0.05
USP54-209ENST00000464635 GRAPLQ8TC17 118 aaPredicted RBP14.71□□□□□ -0.05
USP54-209ENST00000464635 EIF6P56537 245 aaKnown RBP14.7□□□□□ -0.06
USP54-209ENST00000464635 KSR2Q6VAB6 950 aa14.7□□□□□ -0.06
USP54-209ENST00000464635 RIC3Q7Z5B4 369 aa14.7□□□□□ -0.06
USP54-209ENST00000464635 NIM1KQ8IY84 436 aa14.7□□□□□ -0.06
USP54-209ENST00000464635 MYD88Q99836 296 aa14.7□□□□□ -0.06
USP54-209ENST00000464635 ALDH1L1O75891 902 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms