RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 MYH3P11055 1940 aa24.92■■□□□ 1.58
COL9A3-204ENST00000463487 INTS3Q68E01 1043 aaKnown RBP24.92■■□□□ 1.58
COL9A3-204ENST00000463487 TMC4Q7Z404 712 aa24.92■■□□□ 1.58
COL9A3-204ENST00000463487 CACNA1SQ13698 1873 aa24.92■■□□□ 1.58
COL9A3-204ENST00000463487 UTYO14607 1347 aa24.91■■□□□ 1.58
COL9A3-204ENST00000463487 BBOX1O75936 387 aa24.91■■□□□ 1.58
COL9A3-204ENST00000463487 CASP7P55210 303 aa24.91■■□□□ 1.58
COL9A3-204ENST00000463487 GRAPQ13588 217 aa24.91■■□□□ 1.58
COL9A3-204ENST00000463487 CC2D2BQ6DHV5 1058 aa24.91■■□□□ 1.58
COL9A3-204ENST00000463487 DZIP1LQ8IYY4 767 aaKnown RBP24.91■■□□□ 1.58
COL9A3-204ENST00000463487 GRAPLQ8TC17 118 aaPredicted RBP24.91■■□□□ 1.58
COL9A3-204ENST00000463487 CLUAP1Q96AJ1 413 aa24.91■■□□□ 1.58
COL9A3-204ENST00000463487 PPEF1O14829 653 aaPredicted RBP24.9■■□□□ 1.58
COL9A3-204ENST00000463487 C21orf2O43822 256 aa24.9■■□□□ 1.58
COL9A3-204ENST00000463487 GRIPAP1Q4V328 841 aa24.9■■□□□ 1.58
COL9A3-204ENST00000463487 ARHGAP27Q6ZUM4 889 aa24.9■■□□□ 1.58
COL9A3-204ENST00000463487 CDC5LQ99459 802 aaKnown RBP24.9■■□□□ 1.58
COL9A3-204ENST00000463487 SLX4Q8IY92 1834 aa24.89■■□□□ 1.58
COL9A3-204ENST00000463487 CCDC93Q567U6 631 aa24.89■■□□□ 1.58
COL9A3-204ENST00000463487 TTLL11Q8NHH1 800 aa24.89■■□□□ 1.58
COL9A3-204ENST00000463487 ZNF219Q9P2Y4 722 aaPredicted RBP24.89■■□□□ 1.58
COL9A3-204ENST00000463487 NBPF7P0C2Y1 421 aaPredicted RBP24.88■■□□□ 1.57
COL9A3-204ENST00000463487 UBTFL1P0CB47 393 aaPredicted RBP24.88■■□□□ 1.57
COL9A3-204ENST00000463487 USP44Q9H0E7 712 aa24.88■■□□□ 1.57
COL9A3-204ENST00000463487 RTL9Q8NET4 1388 aa24.88■■□□□ 1.57
COL9A3-204ENST00000463487 GNAI3P08754 354 aa24.87■■□□□ 1.57
COL9A3-204ENST00000463487 RTKN2Q8IZC4 609 aa24.86■■□□□ 1.57
COL9A3-204ENST00000463487 CCDC85AQ96PX6 553 aaPredicted RBP24.86■■□□□ 1.57
COL9A3-204ENST00000463487 CHMP3Q9Y3E7 222 aa24.86■■□□□ 1.57
COL9A3-204ENST00000463487 CSF1RP07333 972 aa24.85■■□□□ 1.57
COL9A3-204ENST00000463487 RPS8P62241 208 aaKnown RBP24.85■■□□□ 1.57
COL9A3-204ENST00000463487 ANKRD18AQ8IVF6 992 aa24.85■■□□□ 1.57
COL9A3-204ENST00000463487 ITPRIPQ8IWB1 547 aa24.85■■□□□ 1.57
COL9A3-204ENST00000463487 TMEM57Q8N5G2 664 aa24.85■■□□□ 1.57
COL9A3-204ENST00000463487 ATP6V0A2Q9Y487 856 aa24.85■■□□□ 1.57
COL9A3-204ENST00000463487 FOXO4P98177 505 aa24.84■■□□□ 1.57
COL9A3-204ENST00000463487 IFIT5Q13325 482 aaKnown RBP24.84■■□□□ 1.57
COL9A3-204ENST00000463487 C7orf43Q8WVR3 580 aa24.84■■□□□ 1.57
COL9A3-204ENST00000463487 SUCLG2Q96I99 432 aa24.84■■□□□ 1.57
COL9A3-204ENST00000463487 GREM2Q9H772 168 aa24.84■■□□□ 1.57
COL9A3-204ENST00000463487 ANKRD18BA2A2Z9 1011 aa24.83■■□□□ 1.57
COL9A3-204ENST00000463487 ITGA6P23229 1130 aa24.83■■□□□ 1.57
COL9A3-204ENST00000463487 IGHMBP2P38935 993 aaKnown RBP24.83■■□□□ 1.57
COL9A3-204ENST00000463487 CCDC57Q2TAC2 916 aa24.83■■□□□ 1.57
COL9A3-204ENST00000463487 LMBR1LQ6UX01 489 aa24.83■■□□□ 1.57
COL9A3-204ENST00000463487 SP8Q8IXZ3 490 aa24.83■■□□□ 1.57
COL9A3-204ENST00000463487 TNNQ9UQP3 1299 aa24.83■■□□□ 1.57
COL9A3-204ENST00000463487 FAM161AQ3B820 660 aa24.82■■□□□ 1.56
COL9A3-204ENST00000463487 TAF7LQ5H9L4 462 aa24.82■■□□□ 1.56
COL9A3-204ENST00000463487 CELF1Q92879 486 aaKnown RBP24.82■■□□□ 1.56
COL9A3-204ENST00000463487 TAOK3Q9H2K8 898 aa24.82■■□□□ 1.56
COL9A3-204ENST00000463487 SEC31BQ9NQW1 1179 aa24.82■■□□□ 1.56
COL9A3-204ENST00000463487 CHMP4BQ9H444 224 aaKnown RBP24.81■■□□□ 1.56
COL9A3-204ENST00000463487 BICC1Q9H694 974 aaKnown RBP24.81■■□□□ 1.56
COL9A3-204ENST00000463487 LTBP3Q9NS15 1303 aa24.81■■□□□ 1.56
COL9A3-204ENST00000463487 GOLGB1Q14789 3259 aaKnown RBP24.8■■□□□ 1.56
COL9A3-204ENST00000463487 MPHOSPH8Q99549 860 aa24.8■■□□□ 1.56
COL9A3-204ENST00000463487 MEIS3Q99687 375 aa24.8■■□□□ 1.56
COL9A3-204ENST00000463487 CHD4Q14839 1912 aa24.79■■□□□ 1.56
COL9A3-204ENST00000463487 PDE3AQ14432 1141 aa24.79■■□□□ 1.56
COL9A3-204ENST00000463487 RABL6Q3YEC7 729 aaPredicted RBP24.79■■□□□ 1.56
COL9A3-204ENST00000463487 PLIN1O60240 522 aa24.78■■□□□ 1.56
COL9A3-204ENST00000463487 FKBP4Q02790 459 aaKnown RBP eCLIP24.78■■□□□ 1.56
COL9A3-204ENST00000463487 EPHA10Q5JZY3 1008 aa24.78■■□□□ 1.56
COL9A3-204ENST00000463487 SUPT20HQ8NEM7 779 aa24.78■■□□□ 1.56
COL9A3-204ENST00000463487 PSMD1Q99460 953 aa24.78■■□□□ 1.56
COL9A3-204ENST00000463487 FER1L6Q2WGJ9 1857 aa24.78■■□□□ 1.56
COL9A3-204ENST00000463487 GNAI2P04899 355 aa24.77■■□□□ 1.56
COL9A3-204ENST00000463487 RLBP1P12271 317 aa24.77■■□□□ 1.56
COL9A3-204ENST00000463487 LMNB1P20700 586 aa24.77■■□□□ 1.56
COL9A3-204ENST00000463487 DPP8Q6V1X1 898 aaPredicted RBP24.77■■□□□ 1.56
COL9A3-204ENST00000463487 MPNDQ8N594 471 aa24.77■■□□□ 1.56
COL9A3-204ENST00000463487 PANK1Q8TE04 598 aa24.77■■□□□ 1.56
COL9A3-204ENST00000463487 KAZALD1Q96I82 304 aa24.77■■□□□ 1.56
COL9A3-204ENST00000463487 BSDC1Q9NW68 430 aaPredicted RBP24.77■■□□□ 1.56
COL9A3-204ENST00000463487 DDX19BQ9UMR2 479 aa24.77■■□□□ 1.56
COL9A3-204ENST00000463487 TAF1P21675 1872 aa24.77■■□□□ 1.56
COL9A3-204ENST00000463487 NFKBIEO00221 500 aa24.76■■□□□ 1.55
COL9A3-204ENST00000463487 RASSF7Q02833 373 aa24.76■■□□□ 1.55
COL9A3-204ENST00000463487 LRRFIP2Q9Y608 721 aaKnown RBP24.76■■□□□ 1.55
COL9A3-204ENST00000463487 MVPQ14764 893 aaKnown RBP24.75■■□□□ 1.55
COL9A3-204ENST00000463487 OLFM4Q6UX06 510 aa24.75■■□□□ 1.55
COL9A3-204ENST00000463487 LRRC37AA6NMS7 1700 aa24.75■■□□□ 1.55
COL9A3-204ENST00000463487 ANKRD44Q8N8A2 993 aa24.74■■□□□ 1.55
COL9A3-204ENST00000463487 RNF181Q9P0P0 153 aa24.74■■□□□ 1.55
COL9A3-204ENST00000463487 ANKIB1Q9P2G1 1089 aa24.74■■□□□ 1.55
COL9A3-204ENST00000463487 RRP1P56182 461 aaKnown RBP24.73■■□□□ 1.55
COL9A3-204ENST00000463487 NSFL1CQ9UNZ2 370 aaKnown RBP24.73■■□□□ 1.55
COL9A3-204ENST00000463487 LDHAL6AQ6ZMR3 332 aa24.72■■□□□ 1.55
COL9A3-204ENST00000463487 VPS33BQ9H267 617 aa24.72■■□□□ 1.55
COL9A3-204ENST00000463487 COG6Q9Y2V7 657 aa24.72■■□□□ 1.55
COL9A3-204ENST00000463487 SNED1Q8TER0 1413 aa24.71■■□□□ 1.55
COL9A3-204ENST00000463487 XDHP47989 1333 aa24.71■■□□□ 1.55
COL9A3-204ENST00000463487 SPEF2Q9C093 1822 aa24.71■■□□□ 1.55
COL9A3-204ENST00000463487 ZBTB7BO15156 539 aaPredicted RBP24.71■■□□□ 1.55
COL9A3-204ENST00000463487 C9orf131Q5VYM1 1079 aa24.71■■□□□ 1.55
COL9A3-204ENST00000463487 ANKRD2Q9GZV1 360 aa24.71■■□□□ 1.55
COL9A3-204ENST00000463487 CNNM1Q9NRU3 951 aa24.71■■□□□ 1.55
COL9A3-204ENST00000463487 ZC3H4Q9UPT8 1303 aaKnown RBP24.7■■□□□ 1.54
COL9A3-204ENST00000463487 EYA3Q99504 573 aa24.7■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms