RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 MBIPQ9NS73 344 aa7.18□□□□□ -1.26
VPS41-210ENST00000462429 ABI2Q9NYB9 513 aaPredicted RBP7.18□□□□□ -1.26
VPS41-210ENST00000462429 TNFRSF21O75509 655 aa7.17□□□□□ -1.26
VPS41-210ENST00000462429 NFKB1P19838 968 aa7.17□□□□□ -1.26
VPS41-210ENST00000462429 TARSP26639 723 aaKnown RBP7.17□□□□□ -1.26
VPS41-210ENST00000462429 MAP2K3P46734 347 aa7.17□□□□□ -1.26
VPS41-210ENST00000462429 FMR1Q06787 632 aaKnown RBP eCLIP7.17□□□□□ -1.26
VPS41-210ENST00000462429 GRIN2CQ14957 1233 aa7.17□□□□□ -1.26
VPS41-210ENST00000462429 EAPPQ56P03 285 aaPredicted RBP7.17□□□□□ -1.26
VPS41-210ENST00000462429 GPR161Q8N6U8 529 aaKnown RBP7.17□□□□□ -1.26
VPS41-210ENST00000462429 TMEM63CQ9P1W3 806 aa7.17□□□□□ -1.26
VPS41-210ENST00000462429 AMOTL2Q9Y2J4 779 aa7.17□□□□□ -1.26
VPS41-210ENST00000462429 PHACTR2O75167 634 aa7.16□□□□□ -1.26
VPS41-210ENST00000462429 MAPK8P45983 427 aa7.16□□□□□ -1.26
VPS41-210ENST00000462429 FGD1P98174 961 aa7.16□□□□□ -1.26
VPS41-210ENST00000462429 NFX1Q12986 1120 aaKnown RBP7.16□□□□□ -1.26
VPS41-210ENST00000462429 GAS6Q14393 721 aa7.16□□□□□ -1.26
VPS41-210ENST00000462429 RAB44Q7Z6P3 723 aaPredicted RBP7.16□□□□□ -1.26
VPS41-210ENST00000462429 PMEPA1Q969W9 287 aa7.16□□□□□ -1.26
VPS41-210ENST00000462429 BCL2L13Q9BXK5 485 aa7.16□□□□□ -1.26
VPS41-210ENST00000462429 COL25A1Q9BXS0 654 aaPredicted RBP7.16□□□□□ -1.26
VPS41-210ENST00000462429 DNAJC25Q9H1X3 360 aa7.16□□□□□ -1.26
VPS41-210ENST00000462429 AVENQ9NQS1 362 aaPredicted RBP7.16□□□□□ -1.26
VPS41-210ENST00000462429 CPNE3O75131 537 aaKnown RBP7.15□□□□□ -1.26
VPS41-210ENST00000462429 MAP3K6O95382 1288 aa7.15□□□□□ -1.26
VPS41-210ENST00000462429 P4HBP07237 508 aaKnown RBP7.15□□□□□ -1.26
VPS41-210ENST00000462429 PSAPP07602 524 aa7.15□□□□□ -1.26
VPS41-210ENST00000462429 ATP2B2Q01814 1243 aa7.15□□□□□ -1.26
VPS41-210ENST00000462429 ZNF468Q5VIY5 522 aaPredicted RBP7.15□□□□□ -1.26
VPS41-210ENST00000462429 FOXD4L4Q8WXT5 416 aaPredicted RBP7.15□□□□□ -1.26
VPS41-210ENST00000462429 CSRNP1Q96S65 589 aa7.15□□□□□ -1.26
VPS41-210ENST00000462429 ZFATQ9P243 1243 aa7.15□□□□□ -1.26
VPS41-210ENST00000462429 FOXD3Q9UJU5 478 aaPredicted RBP7.15□□□□□ -1.26
VPS41-210ENST00000462429 ERBB4Q15303 1308 aa7.15□□□□□ -1.26
VPS41-210ENST00000462429 PHF20L1A8MW92 1017 aa7.14□□□□□ -1.27
VPS41-210ENST00000462429 C2CD2LO14523 706 aa7.14□□□□□ -1.27
VPS41-210ENST00000462429 EIF1AYO14602 144 aaKnown RBP7.14□□□□□ -1.27
VPS41-210ENST00000462429 MMP20O60882 483 aa7.14□□□□□ -1.27
VPS41-210ENST00000462429 ORC1Q13415 861 aa7.14□□□□□ -1.27
VPS41-210ENST00000462429 ZNF326Q5BKZ1 582 aaKnown RBP7.14□□□□□ -1.27
VPS41-210ENST00000462429 SYT9Q86SS6 491 aa7.14□□□□□ -1.27
VPS41-210ENST00000462429 OR13H1Q8NG92 308 aa7.14□□□□□ -1.27
VPS41-210ENST00000462429 ZFYVE28Q9HCC9 887 aa7.14□□□□□ -1.27
VPS41-210ENST00000462429 TLR7Q9NYK1 1049 aaKnown RBP7.14□□□□□ -1.27
VPS41-210ENST00000462429 PNMA6FA0A0J9YX94 578 aa7.13□□□□□ -1.27
VPS41-210ENST00000462429 SIN3BO75182 1162 aa7.13□□□□□ -1.27
VPS41-210ENST00000462429 ARAFP10398 606 aa7.13□□□□□ -1.27
VPS41-210ENST00000462429 CES1P23141 567 aa7.13□□□□□ -1.27
VPS41-210ENST00000462429 ADH6P28332 368 aa7.13□□□□□ -1.27
VPS41-210ENST00000462429 SOX18P35713 384 aa7.13□□□□□ -1.27
VPS41-210ENST00000462429 PLAURQ03405 335 aa7.13□□□□□ -1.27
VPS41-210ENST00000462429 ENOX2Q16206 610 aaKnown RBP7.13□□□□□ -1.27
VPS41-210ENST00000462429 PCSK7Q16549 785 aa7.13□□□□□ -1.27
VPS41-210ENST00000462429 DHX32Q7L7V1 743 aaKnown RBP7.13□□□□□ -1.27
VPS41-210ENST00000462429 FBXO33Q7Z6M2 555 aa7.13□□□□□ -1.27
VPS41-210ENST00000462429 C1orf127Q8N9H9 656 aa7.13□□□□□ -1.27
VPS41-210ENST00000462429 BCL11AQ9H165 835 aa7.13□□□□□ -1.27
VPS41-210ENST00000462429 CNTN3Q9P232 1028 aa7.13□□□□□ -1.27
VPS41-210ENST00000462429 IGF1RP08069 1367 aa7.12□□□□□ -1.27
VPS41-210ENST00000462429 RBM47A0AV96 593 aaKnown RBP7.12□□□□□ -1.27
VPS41-210ENST00000462429 LDHBP07195 334 aaKnown RBP7.12□□□□□ -1.27
VPS41-210ENST00000462429 PCBP4P57723 403 aaKnown RBP7.12□□□□□ -1.27
VPS41-210ENST00000462429 SRSF11Q05519 484 aaKnown RBP7.12□□□□□ -1.27
VPS41-210ENST00000462429 RNFT1Q5M7Z0 435 aa7.12□□□□□ -1.27
VPS41-210ENST00000462429 ALG1LQ6GMV1 187 aa7.12□□□□□ -1.27
VPS41-210ENST00000462429 GIPC2Q8TF65 315 aa7.12□□□□□ -1.27
VPS41-210ENST00000462429 UBE2OQ9C0C9 1292 aaKnown RBP7.12□□□□□ -1.27
VPS41-210ENST00000462429 PRPF40AO75400 957 aaKnown RBP7.11□□□□□ -1.27
VPS41-210ENST00000462429 WFS1O76024 890 aa7.11□□□□□ -1.27
VPS41-210ENST00000462429 HOXD8P13378 290 aaPredicted RBP7.11□□□□□ -1.27
VPS41-210ENST00000462429 NRLP54845 237 aa7.11□□□□□ -1.27
VPS41-210ENST00000462429 HYAL2Q12891 473 aa7.11□□□□□ -1.27
VPS41-210ENST00000462429 FBF1Q8TES7 1133 aa7.11□□□□□ -1.27
VPS41-210ENST00000462429 CNTNAP3BQ96NU0 1288 aa7.11□□□□□ -1.27
VPS41-210ENST00000462429 CNTNAP3Q9BZ76 1288 aa7.11□□□□□ -1.27
VPS41-210ENST00000462429 CHRDQ9H2X0 955 aa7.11□□□□□ -1.27
VPS41-210ENST00000462429 IGFLR1Q9H665 355 aa7.11□□□□□ -1.27
VPS41-210ENST00000462429 GDF2Q9UK05 429 aaPredicted RBP7.11□□□□□ -1.27
VPS41-210ENST00000462429 EREGO14944 169 aa7.1□□□□□ -1.27
VPS41-210ENST00000462429 EDN3P14138 238 aa7.1□□□□□ -1.27
VPS41-210ENST00000462429 GPLD1P80108 840 aa7.1□□□□□ -1.27
VPS41-210ENST00000462429 TBC1D8BQ0IIM8 1120 aa7.1□□□□□ -1.27
VPS41-210ENST00000462429 NCAPG2Q86XI2 1143 aa7.1□□□□□ -1.27
VPS41-210ENST00000462429 GOLGA6L1Q8N7Z2 621 aa7.1□□□□□ -1.27
VPS41-210ENST00000462429 TRPM4Q8TD43 1214 aa7.1□□□□□ -1.27
VPS41-210ENST00000462429 TNFRSF25Q93038 417 aa7.1□□□□□ -1.27
VPS41-210ENST00000462429 KANSL3Q9P2N6 904 aa7.1□□□□□ -1.27
VPS41-210ENST00000462429 NEURL1BA8MQ27 555 aa7.09□□□□□ -1.27
VPS41-210ENST00000462429 CYP2E1P05181 493 aaPredicted RBP7.09□□□□□ -1.27
VPS41-210ENST00000462429 ZNF16P17020 682 aaPredicted RBP7.09□□□□□ -1.27
VPS41-210ENST00000462429 USPL1Q5W0Q7 1092 aa7.09□□□□□ -1.27
VPS41-210ENST00000462429 GALNT12Q8IXK2 581 aa7.09□□□□□ -1.27
VPS41-210ENST00000462429 CCDC74AQ96AQ1 378 aa7.09□□□□□ -1.27
VPS41-210ENST00000462429 ZNF775Q96BV0 537 aaPredicted RBP7.09□□□□□ -1.27
VPS41-210ENST00000462429 SPACA7Q96KW9 195 aa7.09□□□□□ -1.27
VPS41-210ENST00000462429 OXCT2Q9BYC2 517 aaPredicted RBP7.09□□□□□ -1.27
VPS41-210ENST00000462429 DNAJB12Q9NXW2 375 aaKnown RBP7.09□□□□□ -1.27
VPS41-210ENST00000462429 GGA1Q9UJY5 639 aa7.09□□□□□ -1.27
VPS41-210ENST00000462429 ADARB2-AS1A8MUL3 147 aa7.08□□□□□ -1.28
VPS41-210ENST00000462429 ADAMTS2O95450 1211 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms