RNA–Protein interactions for RNA: ENST00000461409.1

HDAC9-220, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-220ENST00000461409 DDX27Q96GQ7 796 aaKnown RBP11.46□□□□□ -0.57
HDAC9-220ENST00000461409 LARP6Q9BRS8 491 aaKnown RBP11.46□□□□□ -0.57
HDAC9-220ENST00000461409 RRAGCQ9HB90 399 aa11.46□□□□□ -0.57
HDAC9-220ENST00000461409 MIS18AQ9NYP9 233 aa11.46□□□□□ -0.57
HDAC9-220ENST00000461409 NIP7Q9Y221 180 aaKnown RBP eCLIP11.46□□□□□ -0.57
HDAC9-220ENST00000461409 SBF1O95248 1867 aa11.46□□□□□ -0.58
HDAC9-220ENST00000461409 ANKRD31Q8N7Z5 1873 aa11.46□□□□□ -0.58
HDAC9-220ENST00000461409 NPR1P16066 1061 aa11.45□□□□□ -0.58
HDAC9-220ENST00000461409 SMC1BQ8NDV3 1235 aa11.45□□□□□ -0.58
HDAC9-220ENST00000461409 OXER1Q8TDS5 423 aa11.45□□□□□ -0.58
HDAC9-220ENST00000461409 TAOK3Q9H2K8 898 aa11.45□□□□□ -0.58
HDAC9-220ENST00000461409 COL11A2P13942 1736 aaPredicted RBP11.44□□□□□ -0.58
HDAC9-220ENST00000461409 PRELPP51888 382 aa11.44□□□□□ -0.58
HDAC9-220ENST00000461409 EIF4A1P60842 406 aaKnown RBP11.44□□□□□ -0.58
HDAC9-220ENST00000461409 ERFEQ4G0M1 354 aa11.44□□□□□ -0.58
HDAC9-220ENST00000461409 LHX6Q9UPM6 363 aa11.44□□□□□ -0.58
HDAC9-220ENST00000461409 KLRG2A4D1S0 409 aaPredicted RBP11.43□□□□□ -0.58
HDAC9-220ENST00000461409 ERVV-1B6SEH8 477 aa11.43□□□□□ -0.58
HDAC9-220ENST00000461409 GTF2E1P29083 439 aaPredicted RBP11.43□□□□□ -0.58
HDAC9-220ENST00000461409 LMOD3Q0VAK6 560 aa11.43□□□□□ -0.58
HDAC9-220ENST00000461409 KIF6Q6ZMV9 814 aa11.43□□□□□ -0.58
HDAC9-220ENST00000461409 NYXQ9GZU5 481 aa11.43□□□□□ -0.58
HDAC9-220ENST00000461409 LAMB4A4D0S4 1761 aa11.43□□□□□ -0.58
HDAC9-220ENST00000461409 ERBB4Q15303 1308 aa11.42□□□□□ -0.58
HDAC9-220ENST00000461409 MAP3K15Q6ZN16 1313 aa11.42□□□□□ -0.58
HDAC9-220ENST00000461409 CCDC93Q567U6 631 aa11.42□□□□□ -0.58
HDAC9-220ENST00000461409 PAXIP1Q6ZW49 1069 aaPredicted RBP11.42□□□□□ -0.58
HDAC9-220ENST00000461409 THUMPD2Q9BTF0 503 aaKnown RBP11.42□□□□□ -0.58
HDAC9-220ENST00000461409 BABAM1Q9NWV8 329 aa11.42□□□□□ -0.58
HDAC9-220ENST00000461409 TSPYL4Q9UJ04 414 aa11.42□□□□□ -0.58
HDAC9-220ENST00000461409 TIAM2Q8IVF5 1701 aa11.42□□□□□ -0.58
HDAC9-220ENST00000461409 KDM3BQ7LBC6 1761 aa11.41□□□□□ -0.58
HDAC9-220ENST00000461409 HLFQ16534 295 aa11.41□□□□□ -0.58
HDAC9-220ENST00000461409 NGEFQ8N5V2 710 aa11.41□□□□□ -0.58
HDAC9-220ENST00000461409 DNAJC5GQ8N7S2 189 aa11.41□□□□□ -0.58
HDAC9-220ENST00000461409 RRP7AQ9Y3A4 280 aaKnown RBP11.41□□□□□ -0.58
HDAC9-220ENST00000461409 DLG5Q8TDM6 1919 aa11.41□□□□□ -0.58
HDAC9-220ENST00000461409 MYBBP1AQ9BQG0 1328 aaKnown RBP11.4□□□□□ -0.58
HDAC9-220ENST00000461409 FAM177BA6PVY3 158 aa11.4□□□□□ -0.58
HDAC9-220ENST00000461409 TBC1D12O60347 775 aa11.4□□□□□ -0.58
HDAC9-220ENST00000461409 MYL6BP14649 208 aa11.4□□□□□ -0.58
HDAC9-220ENST00000461409 ALDH1B1P30837 517 aa11.4□□□□□ -0.58
HDAC9-220ENST00000461409 RIPK4P57078 832 aa11.4□□□□□ -0.58
HDAC9-220ENST00000461409 ANKRD13DQ6ZTN6 518 aa11.4□□□□□ -0.58
HDAC9-220ENST00000461409 RTKN2Q8IZC4 609 aa11.4□□□□□ -0.58
HDAC9-220ENST00000461409 C7orf43Q8WVR3 580 aa11.4□□□□□ -0.58
HDAC9-220ENST00000461409 CFAP44Q96MT7 982 aa11.4□□□□□ -0.58
HDAC9-220ENST00000461409 ARFGEF2Q9Y6D5 1785 aa11.4□□□□□ -0.58
HDAC9-220ENST00000461409 FER1L6Q2WGJ9 1857 aa11.4□□□□□ -0.59
HDAC9-220ENST00000461409 IBTKQ9P2D0 1353 aaPredicted RBP11.4□□□□□ -0.59
HDAC9-220ENST00000461409 SLX4Q8IY92 1834 aa11.39□□□□□ -0.59
HDAC9-220ENST00000461409 TMPOP42166 694 aaKnown RBP11.39□□□□□ -0.59
HDAC9-220ENST00000461409 FKBP4Q02790 459 aaKnown RBP eCLIP11.39□□□□□ -0.59
HDAC9-220ENST00000461409 WDR90Q96KV7 1748 aa11.39□□□□□ -0.59
HDAC9-220ENST00000461409 RIC1Q4ADV7 1423 aa11.38□□□□□ -0.59
HDAC9-220ENST00000461409 IQCA1LA6NCM1 817 aa11.38□□□□□ -0.59
HDAC9-220ENST00000461409 DDX10Q13206 875 aaKnown RBP11.38□□□□□ -0.59
HDAC9-220ENST00000461409 WDR43Q15061 677 aaKnown RBP eCLIP11.38□□□□□ -0.59
HDAC9-220ENST00000461409 CRY2Q49AN0 593 aa11.38□□□□□ -0.59
HDAC9-220ENST00000461409 IFFO2Q5TF58 517 aa11.38□□□□□ -0.59
HDAC9-220ENST00000461409 TTLL7Q6ZT98 887 aa11.38□□□□□ -0.59
HDAC9-220ENST00000461409 KLRG1Q96E93 195 aa11.38□□□□□ -0.59
HDAC9-220ENST00000461409 ZBTB3Q9H5J0 574 aa11.38□□□□□ -0.59
HDAC9-220ENST00000461409 POTECB2RU33 542 aa11.37□□□□□ -0.59
HDAC9-220ENST00000461409 GPTP24298 496 aa11.37□□□□□ -0.59
HDAC9-220ENST00000461409 GRIPAP1Q4V328 841 aa11.37□□□□□ -0.59
HDAC9-220ENST00000461409 PARP10Q53GL7 1025 aa11.37□□□□□ -0.59
HDAC9-220ENST00000461409 CC2D2BQ6DHV5 1058 aa11.37□□□□□ -0.59
HDAC9-220ENST00000461409 GIGYF2Q6Y7W6 1299 aaKnown RBP11.37□□□□□ -0.59
HDAC9-220ENST00000461409 PPP1R42Q7Z4L9 355 aa11.37□□□□□ -0.59
HDAC9-220ENST00000461409 NUTM1Q86Y26 1132 aa11.37□□□□□ -0.59
HDAC9-220ENST00000461409 RPGRQ92834 1020 aaKnown RBP11.37□□□□□ -0.59
HDAC9-220ENST00000461409 ABCC12Q96J65 1359 aa11.37□□□□□ -0.59
HDAC9-220ENST00000461409 DICER1Q9UPY3 1922 aaKnown RBP11.37□□□□□ -0.59
HDAC9-220ENST00000461409 UBN2Q6ZU65 1347 aa11.36□□□□□ -0.59
HDAC9-220ENST00000461409 CCDC88AQ3V6T2 1871 aa11.36□□□□□ -0.59
HDAC9-220ENST00000461409 DDNO94850 711 aaPredicted RBP11.36□□□□□ -0.59
HDAC9-220ENST00000461409 EIF2S2P20042 333 aaKnown RBP11.36□□□□□ -0.59
HDAC9-220ENST00000461409 HOXA10P31260 410 aaPredicted RBP11.36□□□□□ -0.59
HDAC9-220ENST00000461409 HTRA3P83110 453 aa11.36□□□□□ -0.59
HDAC9-220ENST00000461409 ZNF34Q8IZ26 560 aa11.36□□□□□ -0.59
HDAC9-220ENST00000461409 JMYQ8N9B5 988 aa11.36□□□□□ -0.59
HDAC9-220ENST00000461409 ZNF277Q9NRM2 450 aaPredicted RBP11.36□□□□□ -0.59
HDAC9-220ENST00000461409 SUSD4Q5VX71 490 aa11.35□□□□□ -0.59
HDAC9-220ENST00000461409 RUNDC1Q96C34 613 aa11.35□□□□□ -0.59
HDAC9-220ENST00000461409 RBM17Q96I25 401 aaKnown RBP11.35□□□□□ -0.59
HDAC9-220ENST00000461409 PSMD1Q99460 953 aa11.35□□□□□ -0.59
HDAC9-220ENST00000461409 EMILIN3Q9NT22 766 aa11.35□□□□□ -0.59
HDAC9-220ENST00000461409 CACNA1SQ13698 1873 aa11.35□□□□□ -0.59
HDAC9-220ENST00000461409 RNF123Q5XPI4 1314 aa11.35□□□□□ -0.59
HDAC9-220ENST00000461409 NTSR2O95665 410 aa11.34□□□□□ -0.59
HDAC9-220ENST00000461409 IARSP41252 1262 aaKnown RBP11.34□□□□□ -0.59
HDAC9-220ENST00000461409 PDIA6Q15084 440 aa11.34□□□□□ -0.59
HDAC9-220ENST00000461409 HSP90AB3PQ58FF7 597 aa11.34□□□□□ -0.59
HDAC9-220ENST00000461409 OLFM4Q6UX06 510 aa11.34□□□□□ -0.59
HDAC9-220ENST00000461409 LRP10Q7Z4F1 713 aa11.34□□□□□ -0.59
HDAC9-220ENST00000461409 CCDC146Q8IYE0 955 aa11.34□□□□□ -0.59
HDAC9-220ENST00000461409 JDP2Q8WYK2 163 aa11.34□□□□□ -0.59
HDAC9-220ENST00000461409 CRAMP1Q96RY5 1269 aa11.34□□□□□ -0.59
HDAC9-220ENST00000461409 UTP14AQ9BVJ6 771 aaKnown RBP11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms