RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 VAMP4O75379 141 aa23.79■■□□□ 1.4
HOXD3-204ENST00000459979 RIC3Q7Z5B4 369 aa23.79■■□□□ 1.4
HOXD3-204ENST00000459979 GPC2Q8N158 579 aa23.79■■□□□ 1.4
HOXD3-204ENST00000459979 STK31Q9BXU1 1019 aa23.79■■□□□ 1.4
HOXD3-204ENST00000459979 PPEF1O14829 653 aaPredicted RBP23.78■■□□□ 1.4
HOXD3-204ENST00000459979 DDX58O95786 925 aaKnown RBP23.78■■□□□ 1.4
HOXD3-204ENST00000459979 RBM17Q96I25 401 aaKnown RBP23.78■■□□□ 1.4
HOXD3-204ENST00000459979 NLRP3Q96P20 1036 aa23.78■■□□□ 1.4
HOXD3-204ENST00000459979 TRMT112Q9UI30 125 aaKnown RBP23.78■■□□□ 1.4
HOXD3-204ENST00000459979 SH3TC1Q8TE82 1336 aa23.78■■□□□ 1.4
HOXD3-204ENST00000459979 FOXN1O15353 648 aa23.77■■□□□ 1.4
HOXD3-204ENST00000459979 VEGFBP49765 207 aa23.77■■□□□ 1.4
HOXD3-204ENST00000459979 EIF6P56537 245 aaKnown RBP23.77■■□□□ 1.4
HOXD3-204ENST00000459979 EXOSC9Q06265 439 aaKnown RBP23.77■■□□□ 1.4
HOXD3-204ENST00000459979 CC2D2BQ6DHV5 1058 aa23.77■■□□□ 1.4
HOXD3-204ENST00000459979 CRAMP1Q96RY5 1269 aa23.77■■□□□ 1.4
HOXD3-204ENST00000459979 PNMA8AQ86V59 439 aaPredicted RBP23.76■■□□□ 1.39
HOXD3-204ENST00000459979 CNTROBQ8N137 903 aa23.76■■□□□ 1.39
HOXD3-204ENST00000459979 LARGE2Q8N3Y3 721 aa23.76■■□□□ 1.39
HOXD3-204ENST00000459979 TAF1P21675 1872 aa23.76■■□□□ 1.39
HOXD3-204ENST00000459979 ATP5J2-PTCD1G3V325 749 aa23.75■■□□□ 1.39
HOXD3-204ENST00000459979 DIEXFQ68CQ4 756 aaKnown RBP23.75■■□□□ 1.39
HOXD3-204ENST00000459979 KSR2Q6VAB6 950 aa23.75■■□□□ 1.39
HOXD3-204ENST00000459979 METTL22Q9BUU2 404 aaPredicted RBP23.75■■□□□ 1.39
HOXD3-204ENST00000459979 SLC4A2P04920 1241 aa23.74■■□□□ 1.39
HOXD3-204ENST00000459979 EPS15P42566 896 aa23.73■■□□□ 1.39
HOXD3-204ENST00000459979 LMOD1P29536 600 aaPredicted RBP23.72■■□□□ 1.39
HOXD3-204ENST00000459979 SCNN1DP51172 638 aa23.72■■□□□ 1.39
HOXD3-204ENST00000459979 FMR1Q06787 632 aaKnown RBP eCLIP23.72■■□□□ 1.39
HOXD3-204ENST00000459979 CCDC191Q8NCU4 936 aa23.72■■□□□ 1.39
HOXD3-204ENST00000459979 TRPM7Q96QT4 1865 aa23.71■■□□□ 1.39
HOXD3-204ENST00000459979 ABCC4O15439 1325 aa23.71■■□□□ 1.39
HOXD3-204ENST00000459979 PI4KAP2A4QPH2 592 aa23.71■■□□□ 1.39
HOXD3-204ENST00000459979 PPIP5K2O43314 1243 aa23.71■■□□□ 1.39
HOXD3-204ENST00000459979 HCLS1P14317 486 aaPredicted RBP23.71■■□□□ 1.39
HOXD3-204ENST00000459979 AOC3Q16853 763 aa23.71■■□□□ 1.39
HOXD3-204ENST00000459979 G2E3Q7L622 706 aa23.71■■□□□ 1.39
HOXD3-204ENST00000459979 NIM1KQ8IY84 436 aa23.71■■□□□ 1.39
HOXD3-204ENST00000459979 PI4KAP1Q8N8J0 262 aa23.71■■□□□ 1.39
HOXD3-204ENST00000459979 ZNF428Q96B54 188 aa23.71■■□□□ 1.39
HOXD3-204ENST00000459979 MYD88Q99836 296 aa23.71■■□□□ 1.39
HOXD3-204ENST00000459979 MAP3K2Q9Y2U5 619 aa23.71■■□□□ 1.39
HOXD3-204ENST00000459979 DDX60Q8IY21 1712 aaKnown RBP23.7■■□□□ 1.39
HOXD3-204ENST00000459979 E9PSI1 815 aa23.7■■□□□ 1.38
HOXD3-204ENST00000459979 GRIPAP1Q4V328 841 aa23.7■■□□□ 1.38
HOXD3-204ENST00000459979 ZBTB38Q8NAP3 1195 aaPredicted RBP23.7■■□□□ 1.38
HOXD3-204ENST00000459979 FAM89AQ96GI7 184 aa23.7■■□□□ 1.38
HOXD3-204ENST00000459979 FLIIQ13045 1269 aa23.69■■□□□ 1.38
HOXD3-204ENST00000459979 ABT1Q9ULW3 272 aaKnown RBP23.69■■□□□ 1.38
HOXD3-204ENST00000459979 ATP6V0A2Q9Y487 856 aa23.69■■□□□ 1.38
HOXD3-204ENST00000459979 SF3B3Q15393 1217 aaKnown RBP23.68■■□□□ 1.38
HOXD3-204ENST00000459979 DEFB115Q30KQ5 88 aa23.68■■□□□ 1.38
HOXD3-204ENST00000459979 AIDAQ96BJ3 306 aa23.68■■□□□ 1.38
HOXD3-204ENST00000459979 CWC25Q9NXE8 425 aaPredicted RBP23.68■■□□□ 1.38
HOXD3-204ENST00000459979 RASSF10A6NK89 507 aa23.67■■□□□ 1.38
HOXD3-204ENST00000459979 BBOX1O75936 387 aa23.67■■□□□ 1.38
HOXD3-204ENST00000459979 PCCAP05165 728 aaPredicted RBP23.67■■□□□ 1.38
HOXD3-204ENST00000459979 HSP90B1P14625 803 aaKnown RBP23.67■■□□□ 1.38
HOXD3-204ENST00000459979 SLFN5Q08AF3 891 aa23.67■■□□□ 1.38
HOXD3-204ENST00000459979 MIER1Q8N108 512 aa23.67■■□□□ 1.38
HOXD3-204ENST00000459979 IGKV5-2P06315 115 aa23.66■■□□□ 1.38
HOXD3-204ENST00000459979 TMX4Q9H1E5 349 aaPredicted RBP23.66■■□□□ 1.38
HOXD3-204ENST00000459979 TRAF5O00463 557 aa23.65■■□□□ 1.38
HOXD3-204ENST00000459979 IRS4O14654 1257 aaPredicted RBP23.65■■□□□ 1.38
HOXD3-204ENST00000459979 CTCFP49711 727 aaPredicted RBP23.65■■□□□ 1.38
HOXD3-204ENST00000459979 NEXNQ0ZGT2 675 aa23.65■■□□□ 1.38
HOXD3-204ENST00000459979 WBP1LQ9NX94 342 aa23.65■■□□□ 1.38
HOXD3-204ENST00000459979 WDR33Q9C0J8 1336 aaKnown RBP23.64■■□□□ 1.38
HOXD3-204ENST00000459979 DDX46Q7L014 1031 aaKnown RBP23.64■■□□□ 1.37
HOXD3-204ENST00000459979 TRMT2AQ8IZ69 625 aaKnown RBP23.64■■□□□ 1.37
HOXD3-204ENST00000459979 PRDM10Q9NQV6 1147 aa23.64■■□□□ 1.37
HOXD3-204ENST00000459979 LBX1P52954 281 aa23.63■■□□□ 1.37
HOXD3-204ENST00000459979 CXCL9Q07325 125 aa23.63■■□□□ 1.37
HOXD3-204ENST00000459979 FKBP5Q13451 457 aaPredicted RBP23.63■■□□□ 1.37
HOXD3-204ENST00000459979 DPP8Q6V1X1 898 aaPredicted RBP23.63■■□□□ 1.37
HOXD3-204ENST00000459979 USP50Q70EL3 339 aaPredicted RBP23.63■■□□□ 1.37
HOXD3-204ENST00000459979 CDHR2Q9BYE9 1310 aa23.62■■□□□ 1.37
HOXD3-204ENST00000459979 NEURL1BA8MQ27 555 aa23.62■■□□□ 1.37
HOXD3-204ENST00000459979 GRAPQ13588 217 aa23.62■■□□□ 1.37
HOXD3-204ENST00000459979 RTL5Q5HYW3 569 aaPredicted RBP23.62■■□□□ 1.37
HOXD3-204ENST00000459979 PAXIP1Q6ZW49 1069 aaPredicted RBP23.62■■□□□ 1.37
HOXD3-204ENST00000459979 TMC4Q7Z404 712 aa23.62■■□□□ 1.37
HOXD3-204ENST00000459979 SP8Q8IXZ3 490 aa23.62■■□□□ 1.37
HOXD3-204ENST00000459979 MPNDQ8N594 471 aa23.62■■□□□ 1.37
HOXD3-204ENST00000459979 GRAPLQ8TC17 118 aaPredicted RBP23.62■■□□□ 1.37
HOXD3-204ENST00000459979 DNAAF4Q8WXU2 420 aa23.62■■□□□ 1.37
HOXD3-204ENST00000459979 RTFDC1Q9BY42 306 aaPredicted RBP23.62■■□□□ 1.37
HOXD3-204ENST00000459979 GPRC5DQ9NZD1 345 aa23.62■■□□□ 1.37
HOXD3-204ENST00000459979 ZNRF3Q9ULT6 936 aa23.62■■□□□ 1.37
HOXD3-204ENST00000459979 GRM1Q13255 1194 aa23.61■■□□□ 1.37
HOXD3-204ENST00000459979 SUPT20HQ8NEM7 779 aa23.61■■□□□ 1.37
HOXD3-204ENST00000459979 THSD7BQ9C0I4 1608 aa23.61■■□□□ 1.37
HOXD3-204ENST00000459979 LRRC37AA6NMS7 1700 aa23.61■■□□□ 1.37
HOXD3-204ENST00000459979 DUOX1Q9NRD9 1551 aa23.61■■□□□ 1.37
HOXD3-204ENST00000459979 GMPSP49915 693 aaPredicted RBP23.6■■□□□ 1.37
HOXD3-204ENST00000459979 CST9Q5W186 159 aa23.6■■□□□ 1.37
HOXD3-204ENST00000459979 LINS1Q8NG48 757 aa23.6■■□□□ 1.37
HOXD3-204ENST00000459979 CDCA7LQ96GN5 454 aa23.6■■□□□ 1.37
HOXD3-204ENST00000459979 COL4A1P02462 1669 aa23.6■■□□□ 1.37
HOXD3-204ENST00000459979 PDE8AO60658 829 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms