RNA–Protein interactions for RNA: ENST00000459854.5

UFD1-205, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 1 (best)

Gene UFD1, Length 5,038 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-205ENST00000459854 SYCE3A1L190 88 aa11.36□□□□□ -0.59
UFD1-205ENST00000459854 BAG6P46379 1132 aa11.36□□□□□ -0.59
UFD1-205ENST00000459854 TWISTNBQ3B726 338 aaPredicted RBP11.36□□□□□ -0.59
UFD1-205ENST00000459854 HDGFL1Q5TGJ6 251 aa11.36□□□□□ -0.59
UFD1-205ENST00000459854 ILDR1Q86SU0 546 aaPredicted RBP11.36□□□□□ -0.59
UFD1-205ENST00000459854 FBXW7Q969H0 707 aa11.36□□□□□ -0.59
UFD1-205ENST00000459854 THUMPD2Q9BTF0 503 aaKnown RBP11.36□□□□□ -0.59
UFD1-205ENST00000459854 GTF2E1P29083 439 aaPredicted RBP11.35□□□□□ -0.59
UFD1-205ENST00000459854 NCBP3Q53F19 620 aaKnown RBP11.35□□□□□ -0.59
UFD1-205ENST00000459854 SPECC1LQ69YQ0 1117 aa11.35□□□□□ -0.59
UFD1-205ENST00000459854 TAF4BQ92750 862 aa11.35□□□□□ -0.59
UFD1-205ENST00000459854 BABAM1Q9NWV8 329 aa11.35□□□□□ -0.59
UFD1-205ENST00000459854 OGFRQ9NZT2 677 aa11.35□□□□□ -0.59
UFD1-205ENST00000459854 MAP2K1Q02750 393 aaPredicted RBP11.35□□□□□ -0.59
UFD1-205ENST00000459854 MVPQ14764 893 aaKnown RBP11.35□□□□□ -0.59
UFD1-205ENST00000459854 MED1Q15648 1581 aaPredicted RBP11.35□□□□□ -0.59
UFD1-205ENST00000459854 LARP1BQ659C4 914 aaKnown RBP11.35□□□□□ -0.59
UFD1-205ENST00000459854 CCDC150Q8NCX0 1101 aa11.35□□□□□ -0.59
UFD1-205ENST00000459854 DDX19AQ9NUU7 478 aaKnown RBP11.35□□□□□ -0.59
UFD1-205ENST00000459854 TOPAZ1Q8N9V7 1692 aa11.35□□□□□ -0.59
UFD1-205ENST00000459854 KIF6Q6ZMV9 814 aa11.35□□□□□ -0.59
UFD1-205ENST00000459854 OVOS2A0A0G2JMS6 1433 aa11.35□□□□□ -0.59
UFD1-205ENST00000459854 MON2Q7Z3U7 1717 aa11.35□□□□□ -0.59
UFD1-205ENST00000459854 CHD1LQ86WJ1 897 aa11.34□□□□□ -0.59
UFD1-205ENST00000459854 NFATC2IPQ8NCF5 419 aa11.34□□□□□ -0.59
UFD1-205ENST00000459854 CDKL5O76039 1030 aa11.34□□□□□ -0.59
UFD1-205ENST00000459854 UBTFL1P0CB47 393 aaPredicted RBP11.34□□□□□ -0.59
UFD1-205ENST00000459854 PRIM1P49642 420 aaKnown RBP11.34□□□□□ -0.59
UFD1-205ENST00000459854 GCOM1H8Y6P7 765 aaPredicted RBP11.34□□□□□ -0.59
UFD1-205ENST00000459854 MYZAPP0CAP1 466 aa11.34□□□□□ -0.59
UFD1-205ENST00000459854 SETSIPP0DME0 302 aa11.34□□□□□ -0.59
UFD1-205ENST00000459854 NECTIN2Q92692 538 aa11.34□□□□□ -0.59
UFD1-205ENST00000459854 BCL11BQ9C0K0 894 aaPredicted RBP11.34□□□□□ -0.59
UFD1-205ENST00000459854 SNRPA1P09661 255 aaKnown RBP11.34□□□□□ -0.59
UFD1-205ENST00000459854 FKBP5Q13451 457 aaPredicted RBP11.34□□□□□ -0.59
UFD1-205ENST00000459854 ME1P48163 572 aa11.33□□□□□ -0.6
UFD1-205ENST00000459854 EXOSC9Q06265 439 aaKnown RBP11.33□□□□□ -0.6
UFD1-205ENST00000459854 GABPB1Q06547 395 aaPredicted RBP11.33□□□□□ -0.6
UFD1-205ENST00000459854 SYCP1Q15431 976 aa11.33□□□□□ -0.6
UFD1-205ENST00000459854 MYOM1P52179 1685 aa11.33□□□□□ -0.6
UFD1-205ENST00000459854 NBPF14Q5TI25 921 aa11.33□□□□□ -0.6
UFD1-205ENST00000459854 ZNF397Q8NF99 534 aaPredicted RBP11.33□□□□□ -0.6
UFD1-205ENST00000459854 NAA15Q9BXJ9 866 aaKnown RBP11.33□□□□□ -0.6
UFD1-205ENST00000459854 SLC52A2Q9HAB3 445 aa11.33□□□□□ -0.6
UFD1-205ENST00000459854 SH2B1Q9NRF2 756 aaPredicted RBP11.33□□□□□ -0.6
UFD1-205ENST00000459854 RGPD8O14715 1765 aaPredicted RBP11.33□□□□□ -0.6
UFD1-205ENST00000459854 CLIP2Q9UDT6 1046 aa11.33□□□□□ -0.6
UFD1-205ENST00000459854 ZKSCAN5Q9Y2L8 839 aa11.33□□□□□ -0.6
UFD1-205ENST00000459854 TTC31Q49AM3 519 aaPredicted RBP11.33□□□□□ -0.6
UFD1-205ENST00000459854 TSR2Q969E8 191 aaKnown RBP11.33□□□□□ -0.6
UFD1-205ENST00000459854 RASSF4Q9H2L5 321 aa11.33□□□□□ -0.6
UFD1-205ENST00000459854 TCEAL9Q9UHQ7 104 aa11.33□□□□□ -0.6
UFD1-205ENST00000459854 AKAP12Q02952 1782 aa11.33□□□□□ -0.6
UFD1-205ENST00000459854 URI1O94763 535 aaPredicted RBP11.32□□□□□ -0.6
UFD1-205ENST00000459854 FAM193AP78312 1265 aa11.32□□□□□ -0.6
UFD1-205ENST00000459854 SLIT3O75094 1523 aa11.32□□□□□ -0.6
UFD1-205ENST00000459854 COL5A2P05997 1499 aaPredicted RBP11.32□□□□□ -0.6
UFD1-205ENST00000459854 CCDC175P0C221 793 aa11.32□□□□□ -0.6
UFD1-205ENST00000459854 MIS18AQ9NYP9 233 aa11.32□□□□□ -0.6
UFD1-205ENST00000459854 APBA3O96018 575 aa11.32□□□□□ -0.6
UFD1-205ENST00000459854 HSPA4P34932 840 aa11.32□□□□□ -0.6
UFD1-205ENST00000459854 ATP6V1AP38606 617 aa11.32□□□□□ -0.6
UFD1-205ENST00000459854 CCT4P50991 539 aaKnown RBP11.32□□□□□ -0.6
UFD1-205ENST00000459854 CEP135Q66GS9 1140 aa11.32□□□□□ -0.6
UFD1-205ENST00000459854 RIC3Q7Z5B4 369 aa11.31□□□□□ -0.6
UFD1-205ENST00000459854 EHBP1Q8NDI1 1231 aa11.31□□□□□ -0.6
UFD1-205ENST00000459854 FSD1Q9BTV5 496 aa11.31□□□□□ -0.6
UFD1-205ENST00000459854 A6NNZ2 444 aa11.31□□□□□ -0.6
UFD1-205ENST00000459854 TDO2P48775 406 aa11.31□□□□□ -0.6
UFD1-205ENST00000459854 LMAN1P49257 510 aa11.31□□□□□ -0.6
UFD1-205ENST00000459854 TUBB8Q3ZCM7 444 aa11.31□□□□□ -0.6
UFD1-205ENST00000459854 DUSP27Q5VZP5 1158 aa11.31□□□□□ -0.6
UFD1-205ENST00000459854 CCAR1Q8IX12 1150 aaKnown RBP11.31□□□□□ -0.6
UFD1-205ENST00000459854 LRRFIP2Q9Y608 721 aaKnown RBP11.31□□□□□ -0.6
UFD1-205ENST00000459854 A0A1B0GUL7 405 aa11.31□□□□□ -0.6
UFD1-205ENST00000459854 A0A087WZG4 1122 aa11.31□□□□□ -0.6
UFD1-205ENST00000459854 GNAI2P04899 355 aa11.31□□□□□ -0.6
UFD1-205ENST00000459854 RNF187Q5TA31 235 aaPredicted RBP11.31□□□□□ -0.6
UFD1-205ENST00000459854 LRSAM1Q6UWE0 723 aa11.31□□□□□ -0.6
UFD1-205ENST00000459854 RPAP2Q8IXW5 612 aaPredicted RBP11.31□□□□□ -0.6
UFD1-205ENST00000459854 WASF1Q92558 559 aa11.31□□□□□ -0.6
UFD1-205ENST00000459854 TNPO1Q92973 898 aaKnown RBP11.31□□□□□ -0.6
UFD1-205ENST00000459854 CLGNO14967 610 aa11.3□□□□□ -0.6
UFD1-205ENST00000459854 PAFAH1B1P43034 410 aa11.3□□□□□ -0.6
UFD1-205ENST00000459854 SLFN5Q08AF3 891 aa11.3□□□□□ -0.6
UFD1-205ENST00000459854 KIF4BQ2VIQ3 1234 aa11.3□□□□□ -0.6
UFD1-205ENST00000459854 NOL7Q9UMY1 257 aaKnown RBP11.3□□□□□ -0.6
UFD1-205ENST00000459854 SNW1Q13573 536 aaKnown RBP11.3□□□□□ -0.6
UFD1-205ENST00000459854 TAX1BP1Q86VP1 789 aa11.3□□□□□ -0.6
UFD1-205ENST00000459854 IPO4Q8TEX9 1081 aaKnown RBP11.3□□□□□ -0.6
UFD1-205ENST00000459854 PAIP2Q9BPZ3 127 aaKnown RBP11.3□□□□□ -0.6
UFD1-205ENST00000459854 CEP131Q9UPN4 1083 aa11.3□□□□□ -0.6
UFD1-205ENST00000459854 NCAPD2Q15021 1401 aa11.3□□□□□ -0.6
UFD1-205ENST00000459854 AIMP1Q12904 312 aaKnown RBP11.3□□□□□ -0.6
UFD1-205ENST00000459854 ARFGAP3Q9NP61 516 aa11.3□□□□□ -0.6
UFD1-205ENST00000459854 SOS1Q07889 1333 aaPredicted RBP11.3□□□□□ -0.6
UFD1-205ENST00000459854 NOLC1Q14978 699 aaKnown RBP eCLIP11.3□□□□□ -0.69e-7■■□□□ 13.8
UFD1-205ENST00000459854 CFAP100Q494V2 611 aa11.3□□□□□ -0.6
UFD1-205ENST00000459854 ATF7IPQ6VMQ6 1270 aa11.3□□□□□ -0.6
UFD1-205ENST00000459854 TICAM2Q86XR7 235 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms