RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 USP42Q9H9J4 1324 aaKnown RBP12.86□□□□□ -0.35
USP39-210ENST00000459775 KLHDC4Q8TBB5 520 aa12.86□□□□□ -0.35
USP39-210ENST00000459775 UTYO14607 1347 aa12.86□□□□□ -0.35
USP39-210ENST00000459775 HCLS1P14317 486 aaPredicted RBP12.85□□□□□ -0.35
USP39-210ENST00000459775 TRIM28Q13263 835 aaKnown RBP12.85□□□□□ -0.35
USP39-210ENST00000459775 MSL1Q68DK7 614 aa12.85□□□□□ -0.35
USP39-210ENST00000459775 TUBGCP6Q96RT7 1819 aa12.85□□□□□ -0.35
USP39-210ENST00000459775 NAP1L2Q9ULW6 460 aaPredicted RBP12.85□□□□□ -0.35
USP39-210ENST00000459775 GYS1P13807 737 aa12.85□□□□□ -0.35
USP39-210ENST00000459775 SSFA2P28290 1259 aa12.85□□□□□ -0.35
USP39-210ENST00000459775 CHMP4BQ9H444 224 aaKnown RBP12.85□□□□□ -0.35
USP39-210ENST00000459775 RWDD1Q9H446 243 aaPredicted RBP12.85□□□□□ -0.35
USP39-210ENST00000459775 SRGAP3O43295 1099 aa12.84□□□□□ -0.35
USP39-210ENST00000459775 HSPA6P17066 643 aa12.84□□□□□ -0.35
USP39-210ENST00000459775 FOXO4P98177 505 aa12.84□□□□□ -0.35
USP39-210ENST00000459775 ATP8B2P98198 1209 aa12.84□□□□□ -0.35
USP39-210ENST00000459775 HDAC1Q13547 482 aaPredicted RBP12.84□□□□□ -0.35
USP39-210ENST00000459775 NFIXQ14938 502 aa12.84□□□□□ -0.35
USP39-210ENST00000459775 HSP90AB3PQ58FF7 597 aa12.84□□□□□ -0.35
USP39-210ENST00000459775 PA2G4Q9UQ80 394 aaKnown RBP12.84□□□□□ -0.35
USP39-210ENST00000459775 NUP98P52948 1817 aa12.84□□□□□ -0.35
USP39-210ENST00000459775 UBR3Q6ZT12 1888 aa12.84□□□□□ -0.35
USP39-210ENST00000459775 AFDNP55196 1824 aaKnown RBP12.84□□□□□ -0.35
USP39-210ENST00000459775 N4BP2Q86UW6 1770 aaPredicted RBP12.83□□□□□ -0.35
USP39-210ENST00000459775 LMBR1LQ6UX01 489 aa12.83□□□□□ -0.35
USP39-210ENST00000459775 ZBTB38Q8NAP3 1195 aaPredicted RBP12.83□□□□□ -0.35
USP39-210ENST00000459775 EXOC6BQ9Y2D4 811 aa12.83□□□□□ -0.35
USP39-210ENST00000459775 NTSR2O95665 410 aa12.83□□□□□ -0.36
USP39-210ENST00000459775 NBR1Q14596 966 aa12.83□□□□□ -0.36
USP39-210ENST00000459775 ERFEQ4G0M1 354 aa12.83□□□□□ -0.36
USP39-210ENST00000459775 CLEC4GQ6UXB4 293 aa12.83□□□□□ -0.36
USP39-210ENST00000459775 C3orf67Q6ZVT6 689 aa12.83□□□□□ -0.36
USP39-210ENST00000459775 RPAP2Q8IXW5 612 aaPredicted RBP12.83□□□□□ -0.36
USP39-210ENST00000459775 GPBP1L1Q9HC44 474 aaPredicted RBP12.83□□□□□ -0.36
USP39-210ENST00000459775 ZNF652Q9Y2D9 606 aa12.83□□□□□ -0.36
USP39-210ENST00000459775 CHMP3Q9Y3E7 222 aa12.83□□□□□ -0.36
USP39-210ENST00000459775 IRS4O14654 1257 aaPredicted RBP12.82□□□□□ -0.36
USP39-210ENST00000459775 PCCAP05165 728 aaPredicted RBP12.82□□□□□ -0.36
USP39-210ENST00000459775 CENPQQ7L2Z9 268 aaPredicted RBP12.82□□□□□ -0.36
USP39-210ENST00000459775 SETDB2Q96T68 719 aa12.82□□□□□ -0.36
USP39-210ENST00000459775 UTP14AQ9BVJ6 771 aaKnown RBP12.82□□□□□ -0.36
USP39-210ENST00000459775 CD2APQ9Y5K6 639 aa12.82□□□□□ -0.36
USP39-210ENST00000459775 C4AP0C0L4 1744 aa12.82□□□□□ -0.36
USP39-210ENST00000459775 SMARCA5O60264 1052 aaPredicted RBP12.82□□□□□ -0.36
USP39-210ENST00000459775 ADRA2BP18089 450 aa12.82□□□□□ -0.36
USP39-210ENST00000459775 FLAD1Q8NFF5 587 aa12.82□□□□□ -0.36
USP39-210ENST00000459775 NLGN2Q8NFZ4 835 aa12.82□□□□□ -0.36
USP39-210ENST00000459775 CC2D2BQ6DHV5 1058 aa12.81□□□□□ -0.36
USP39-210ENST00000459775 ZNF594Q96JF6 807 aaPredicted RBP12.81□□□□□ -0.36
USP39-210ENST00000459775 SIL1Q9H173 461 aa12.81□□□□□ -0.36
USP39-210ENST00000459775 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.81□□□□□ -0.36
USP39-210ENST00000459775 DDR1Q08345 913 aa12.8□□□□□ -0.36
USP39-210ENST00000459775 POLA2Q14181 598 aa12.8□□□□□ -0.36
USP39-210ENST00000459775 SSH3Q8TE77 659 aa12.8□□□□□ -0.36
USP39-210ENST00000459775 PDZRN3Q9UPQ7 1066 aa12.8□□□□□ -0.36
USP39-210ENST00000459775 SH3TC1Q8TE82 1336 aa12.8□□□□□ -0.36
USP39-210ENST00000459775 YBX3P16989 372 aaKnown RBP eCLIP12.8□□□□□ -0.366e-7■■□□□ 12.2
USP39-210ENST00000459775 FAM161AQ3B820 660 aa12.8□□□□□ -0.36
USP39-210ENST00000459775 ANKRD45Q5TZF3 282 aa12.8□□□□□ -0.36
USP39-210ENST00000459775 NBPF5PQ86XG9 351 aaPredicted RBP12.8□□□□□ -0.36
USP39-210ENST00000459775 IPO4Q8TEX9 1081 aaKnown RBP12.8□□□□□ -0.36
USP39-210ENST00000459775 DCTPP1Q9H773 170 aa12.8□□□□□ -0.36
USP39-210ENST00000459775 ABCC12Q96J65 1359 aa12.8□□□□□ -0.36
USP39-210ENST00000459775 BCORQ6W2J9 1755 aa12.8□□□□□ -0.36
USP39-210ENST00000459775 SCN7AQ01118 1682 aa12.79□□□□□ -0.36
USP39-210ENST00000459775 SURF6O75683 361 aaKnown RBP12.79□□□□□ -0.36
USP39-210ENST00000459775 RGS3P49796 1198 aa12.79□□□□□ -0.36
USP39-210ENST00000459775 PARP10Q53GL7 1025 aa12.79□□□□□ -0.36
USP39-210ENST00000459775 TMED8Q6PL24 325 aaPredicted RBP12.79□□□□□ -0.36
USP39-210ENST00000459775 SMC5Q8IY18 1101 aa12.79□□□□□ -0.36
USP39-210ENST00000459775 C16orf71Q8IYS4 520 aaPredicted RBP12.79□□□□□ -0.36
USP39-210ENST00000459775 LNPKQ9C0E8 428 aa12.79□□□□□ -0.36
USP39-210ENST00000459775 GREM2Q9H772 168 aa12.79□□□□□ -0.36
USP39-210ENST00000459775 GTF2E1P29083 439 aaPredicted RBP12.79□□□□□ -0.36
USP39-210ENST00000459775 TM4SF1P30408 202 aa12.79□□□□□ -0.36
USP39-210ENST00000459775 RABL6Q3YEC7 729 aaPredicted RBP12.79□□□□□ -0.36
USP39-210ENST00000459775 TTLL11Q8NHH1 800 aa12.79□□□□□ -0.36
USP39-210ENST00000459775 RFX5P48382 616 aaPredicted RBP12.78□□□□□ -0.36
USP39-210ENST00000459775 MTX1Q13505 466 aa12.78□□□□□ -0.36
USP39-210ENST00000459775 GOLGB1Q14789 3259 aaKnown RBP12.78□□□□□ -0.36
USP39-210ENST00000459775 ANKRD36CQ5JPF3 1778 aa12.78□□□□□ -0.36
USP39-210ENST00000459775 HMMRO75330 724 aa12.77□□□□□ -0.36
USP39-210ENST00000459775 SLC51AQ86UW1 340 aa12.77□□□□□ -0.36
USP39-210ENST00000459775 OTUD7AQ8TE49 926 aaPredicted RBP12.77□□□□□ -0.36
USP39-210ENST00000459775 IL1RAPL2Q9NP60 686 aa12.77□□□□□ -0.36
USP39-210ENST00000459775 SEC31BQ9NQW1 1179 aa12.77□□□□□ -0.36
USP39-210ENST00000459775 NPHP1O15259 732 aa12.77□□□□□ -0.37
USP39-210ENST00000459775 SERPINB2P05120 415 aa12.77□□□□□ -0.37
USP39-210ENST00000459775 MMP10P09238 476 aa12.77□□□□□ -0.37
USP39-210ENST00000459775 PDE4AP27815 886 aa12.77□□□□□ -0.37
USP39-210ENST00000459775 CTSWP56202 376 aa12.77□□□□□ -0.37
USP39-210ENST00000459775 PTPN12Q05209 780 aaKnown RBP12.77□□□□□ -0.37
USP39-210ENST00000459775 CERS3Q8IU89 383 aa12.77□□□□□ -0.37
USP39-210ENST00000459775 PUS3Q9BZE2 481 aaKnown RBP12.77□□□□□ -0.37
USP39-210ENST00000459775 CDHR2Q9BYE9 1310 aa12.77□□□□□ -0.37
USP39-210ENST00000459775 IBTKQ9P2D0 1353 aaPredicted RBP12.76□□□□□ -0.37
USP39-210ENST00000459775 POLRMTO00411 1230 aaKnown RBP12.76□□□□□ -0.37
USP39-210ENST00000459775 PDE8AO60658 829 aa12.76□□□□□ -0.37
USP39-210ENST00000459775 CARMIL3Q8ND23 1372 aa12.76□□□□□ -0.37
USP39-210ENST00000459775 CSF1RP07333 972 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 127.7 ms