RNA–Protein interactions for RNA: ENST00000457422.6

CCDC43-202, Transcript of coiled-coil domain containing 43, humanhuman

TSL 1 (best) BASIC

Gene CCDC43, Length 2,058 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-202ENST00000457422 RNF20Q5VTR2 975 aa20.01■□□□□ 0.79
CCDC43-202ENST00000457422 FAM43AQ8N2R8 423 aa20.01■□□□□ 0.79
CCDC43-202ENST00000457422 COL22A1Q8NFW1 1626 aaPredicted RBP20■□□□□ 0.79
CCDC43-202ENST00000457422 NCLP19338 710 aaKnown RBP20■□□□□ 0.79
CCDC43-202ENST00000457422 TRIM28Q13263 835 aaKnown RBP20■□□□□ 0.79
CCDC43-202ENST00000457422 TSGA10IPQ3SY00 556 aa20■□□□□ 0.79
CCDC43-202ENST00000457422 CAVIN1Q6NZI2 390 aaKnown RBP20■□□□□ 0.79
CCDC43-202ENST00000457422 ZNF589Q86UQ0 364 aaPredicted RBP20■□□□□ 0.79
CCDC43-202ENST00000457422 TICAM2Q86XR7 235 aa20■□□□□ 0.79
CCDC43-202ENST00000457422 PIGBQ92521 554 aa20■□□□□ 0.79
CCDC43-202ENST00000457422 HMG20BQ9P0W2 317 aa20■□□□□ 0.79
CCDC43-202ENST00000457422 ASAP1Q9ULH1 1129 aa20■□□□□ 0.79
CCDC43-202ENST00000457422 NDUFB9Q9Y6M9 179 aa20■□□□□ 0.79
CCDC43-202ENST00000457422 LARGE1O95461 756 aa19.99■□□□□ 0.79
CCDC43-202ENST00000457422 MBD3O95983 291 aa19.99■□□□□ 0.79
CCDC43-202ENST00000457422 DNAJC10Q8IXB1 793 aa19.99■□□□□ 0.79
CCDC43-202ENST00000457422 CIAO1O76071 339 aa19.99■□□□□ 0.79
CCDC43-202ENST00000457422 USPL1Q5W0Q7 1092 aa19.99■□□□□ 0.79
CCDC43-202ENST00000457422 DNAJC2Q99543 621 aaKnown RBP19.99■□□□□ 0.79
CCDC43-202ENST00000457422 WNK3Q9BYP7 1800 aa19.98■□□□□ 0.79
CCDC43-202ENST00000457422 SPEF2Q9C093 1822 aa19.98■□□□□ 0.79
CCDC43-202ENST00000457422 TAF5LO75529 589 aa19.98■□□□□ 0.79
CCDC43-202ENST00000457422 TCIRG1Q13488 830 aa19.98■□□□□ 0.79
CCDC43-202ENST00000457422 ZSCAN23Q3MJ62 389 aa19.98■□□□□ 0.79
CCDC43-202ENST00000457422 ALDH8A1Q9H2A2 487 aaPredicted RBP19.98■□□□□ 0.79
CCDC43-202ENST00000457422 ZNF330Q9Y3S2 320 aaPredicted RBP19.98■□□□□ 0.79
CCDC43-202ENST00000457422 ZNF609O15014 1411 aa19.98■□□□□ 0.79
CCDC43-202ENST00000457422 PALLDQ8WX93 1383 aa19.98■□□□□ 0.79
CCDC43-202ENST00000457422 EYA2O00167 538 aa19.97■□□□□ 0.79
CCDC43-202ENST00000457422 SMC3Q9UQE7 1217 aa19.97■□□□□ 0.79
CCDC43-202ENST00000457422 CCDC9Q9Y3X0 531 aaKnown RBP19.97■□□□□ 0.79
CCDC43-202ENST00000457422 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.97■□□□□ 0.79
CCDC43-202ENST00000457422 AHDC1Q5TGY3 1603 aaPredicted RBP19.97■□□□□ 0.79
CCDC43-202ENST00000457422 COL16A1Q07092 1604 aaPredicted RBP19.96■□□□□ 0.79
CCDC43-202ENST00000457422 KBTBD3Q8NAB2 608 aa19.96■□□□□ 0.79
CCDC43-202ENST00000457422 ZNF594Q96JF6 807 aaPredicted RBP19.96■□□□□ 0.79
CCDC43-202ENST00000457422 TCHHQ07283 1943 aa19.96■□□□□ 0.79
CCDC43-202ENST00000457422 LRRC24Q50LG9 513 aa19.96■□□□□ 0.79
CCDC43-202ENST00000457422 FBXO3Q9UK99 471 aa19.96■□□□□ 0.79
CCDC43-202ENST00000457422 ROBO1Q9Y6N7 1651 aa19.95■□□□□ 0.78
CCDC43-202ENST00000457422 BCL9O00512 1426 aa19.95■□□□□ 0.78
CCDC43-202ENST00000457422 ZSCAN22P10073 491 aaPredicted RBP19.95■□□□□ 0.78
CCDC43-202ENST00000457422 KIF6Q6ZMV9 814 aa19.95■□□□□ 0.78
CCDC43-202ENST00000457422 CCDC83Q8IWF9 413 aa19.95■□□□□ 0.78
CCDC43-202ENST00000457422 PLA2G12BQ9BX93 195 aa19.95■□□□□ 0.78
CCDC43-202ENST00000457422 RBM27Q9P2N5 1060 aaKnown RBP19.95■□□□□ 0.78
CCDC43-202ENST00000457422 SH3TC1Q8TE82 1336 aa19.95■□□□□ 0.78
CCDC43-202ENST00000457422 ANKRD36CQ5JPF3 1778 aa19.95■□□□□ 0.78
CCDC43-202ENST00000457422 STX6O43752 255 aa19.95■□□□□ 0.78
CCDC43-202ENST00000457422 STARD3NLO95772 234 aa19.95■□□□□ 0.78
CCDC43-202ENST00000457422 SYT1P21579 422 aa19.95■□□□□ 0.78
CCDC43-202ENST00000457422 ANKRD1Q15327 319 aa19.95■□□□□ 0.78
CCDC43-202ENST00000457422 DDX46Q7L014 1031 aaKnown RBP19.95■□□□□ 0.78
CCDC43-202ENST00000457422 TMEM87AQ8NBN3 555 aa19.95■□□□□ 0.78
CCDC43-202ENST00000457422 NEUROD6Q96NK8 337 aa19.95■□□□□ 0.78
CCDC43-202ENST00000457422 TAF6LQ9Y6J9 622 aa19.95■□□□□ 0.78
CCDC43-202ENST00000457422 CHGBP05060 677 aa19.94■□□□□ 0.78
CCDC43-202ENST00000457422 PCCAP05165 728 aaPredicted RBP19.94■□□□□ 0.78
CCDC43-202ENST00000457422 COL9A3Q14050 684 aaPredicted RBP19.94■□□□□ 0.78
CCDC43-202ENST00000457422 MCMDC2Q4G0Z9 681 aa19.94■□□□□ 0.78
CCDC43-202ENST00000457422 BLOC1S2Q6QNY1 142 aa19.94■□□□□ 0.78
CCDC43-202ENST00000457422 RPS6KB1P23443 525 aa19.93■□□□□ 0.78
CCDC43-202ENST00000457422 ST3GAL1Q11201 340 aa19.93■□□□□ 0.78
CCDC43-202ENST00000457422 KRT32Q14532 448 aa19.93■□□□□ 0.78
CCDC43-202ENST00000457422 ME3Q16798 604 aa19.93■□□□□ 0.78
CCDC43-202ENST00000457422 NSFL1CQ9UNZ2 370 aaKnown RBP19.93■□□□□ 0.78
CCDC43-202ENST00000457422 TIMM10P62072 90 aa19.93■□□□□ 0.78
CCDC43-202ENST00000457422 FOXD4L6Q3SYB3 417 aaPredicted RBP19.93■□□□□ 0.78
CCDC43-202ENST00000457422 FOXD4L3Q6VB84 417 aaPredicted RBP19.93■□□□□ 0.78
CCDC43-202ENST00000457422 CCDC129Q6ZRS4 1044 aa19.93■□□□□ 0.78
CCDC43-202ENST00000457422 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.93■□□□□ 0.78
CCDC43-202ENST00000457422 TMEM63CQ9P1W3 806 aa19.93■□□□□ 0.78
CCDC43-202ENST00000457422 PDIA4P13667 645 aaKnown RBP19.92■□□□□ 0.78
CCDC43-202ENST00000457422 PUS3Q9BZE2 481 aaKnown RBP19.92■□□□□ 0.78
CCDC43-202ENST00000457422 TPCN1Q9ULQ1 816 aa19.92■□□□□ 0.78
CCDC43-202ENST00000457422 U3KPZ7 1027 aaPredicted RBP19.92■□□□□ 0.78
CCDC43-202ENST00000457422 MAP3K15Q6ZN16 1313 aa19.92■□□□□ 0.78
CCDC43-202ENST00000457422 GJB2P29033 226 aa19.91■□□□□ 0.78
CCDC43-202ENST00000457422 GIGYF2Q6Y7W6 1299 aaKnown RBP19.91■□□□□ 0.78
CCDC43-202ENST00000457422 SEC62Q99442 399 aaKnown RBP19.91■□□□□ 0.78
CCDC43-202ENST00000457422 PAG1Q9NWQ8 432 aa19.91■□□□□ 0.78
CCDC43-202ENST00000457422 F13A1P00488 732 aa19.91■□□□□ 0.78
CCDC43-202ENST00000457422 NASPP49321 788 aaPredicted RBP19.91■□□□□ 0.78
CCDC43-202ENST00000457422 ZBTB38Q8NAP3 1195 aaPredicted RBP19.91■□□□□ 0.78
CCDC43-202ENST00000457422 ATP6V1DQ9Y5K8 247 aa19.91■□□□□ 0.78
CCDC43-202ENST00000457422 GOLIM4O00461 696 aa19.9■□□□□ 0.78
CCDC43-202ENST00000457422 CSF1RP07333 972 aa19.9■□□□□ 0.78
CCDC43-202ENST00000457422 CCDC57Q2TAC2 916 aa19.9■□□□□ 0.78
CCDC43-202ENST00000457422 HELLSQ9NRZ9 838 aa19.9■□□□□ 0.78
CCDC43-202ENST00000457422 CDHR2Q9BYE9 1310 aa19.9■□□□□ 0.78
CCDC43-202ENST00000457422 A0A1B0GUL7 405 aa19.9■□□□□ 0.78
CCDC43-202ENST00000457422 NECAB1Q8N987 351 aa19.9■□□□□ 0.78
CCDC43-202ENST00000457422 TCEANC2Q96MN5 208 aa19.9■□□□□ 0.78
CCDC43-202ENST00000457422 SLC4A9Q96Q91 983 aa19.9■□□□□ 0.78
CCDC43-202ENST00000457422 MYH3P11055 1940 aa19.89■□□□□ 0.78
CCDC43-202ENST00000457422 TOB2Q14106 344 aaPredicted RBP19.89■□□□□ 0.77
CCDC43-202ENST00000457422 LRSAM1Q6UWE0 723 aa19.89■□□□□ 0.77
CCDC43-202ENST00000457422 FAM89AQ96GI7 184 aa19.89■□□□□ 0.77
CCDC43-202ENST00000457422 GDPD2Q9HCC8 539 aa19.89■□□□□ 0.77
CCDC43-202ENST00000457422 CEP126Q9P2H0 1117 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms