RNA–Protein interactions for RNA: ENST00000457035.5

ATG4A-206, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 939 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-206ENST00000457035 SLX4Q8IY92 1834 aa12.77□□□□□ -0.37
ATG4A-206ENST00000457035 ARFGEF1Q9Y6D6 1849 aa12.77□□□□□ -0.37
ATG4A-206ENST00000457035 TAF1P21675 1872 aa12.77□□□□□ -0.37
ATG4A-206ENST00000457035 H7C1W4 665 aa12.77□□□□□ -0.37
ATG4A-206ENST00000457035 HCLS1P14317 486 aaPredicted RBP12.77□□□□□ -0.37
ATG4A-206ENST00000457035 MNX1P50219 401 aaPredicted RBP12.77□□□□□ -0.37
ATG4A-206ENST00000457035 GCKRQ14397 625 aa12.77□□□□□ -0.37
ATG4A-206ENST00000457035 RTL5Q5HYW3 569 aaPredicted RBP12.77□□□□□ -0.37
ATG4A-206ENST00000457035 JARID2Q92833 1246 aaPredicted RBP12.77□□□□□ -0.37
ATG4A-206ENST00000457035 NLRP3Q96P20 1036 aa12.77□□□□□ -0.37
ATG4A-206ENST00000457035 GPBP1L1Q9HC44 474 aaPredicted RBP12.77□□□□□ -0.37
ATG4A-206ENST00000457035 RIC1Q4ADV7 1423 aa12.77□□□□□ -0.37
ATG4A-206ENST00000457035 TNRC6CQ9HCJ0 1690 aaKnown RBP12.77□□□□□ -0.37
ATG4A-206ENST00000457035 STYK1Q6J9G0 422 aa12.76□□□□□ -0.37
ATG4A-206ENST00000457035 SLC4A10Q6U841 1118 aa12.76□□□□□ -0.37
ATG4A-206ENST00000457035 ZNF622Q969S3 477 aaKnown RBP eCLIP12.76□□□□□ -0.37
ATG4A-206ENST00000457035 MASTLQ96GX5 879 aa12.76□□□□□ -0.37
ATG4A-206ENST00000457035 MYH3P11055 1940 aa12.76□□□□□ -0.37
ATG4A-206ENST00000457035 IRS4O14654 1257 aaPredicted RBP12.75□□□□□ -0.37
ATG4A-206ENST00000457035 ALDH1L1O75891 902 aa12.75□□□□□ -0.37
ATG4A-206ENST00000457035 NPR1P16066 1061 aa12.75□□□□□ -0.37
ATG4A-206ENST00000457035 HOXA10P31260 410 aaPredicted RBP12.75□□□□□ -0.37
ATG4A-206ENST00000457035 CASP7P55210 303 aa12.75□□□□□ -0.37
ATG4A-206ENST00000457035 CACNA1SQ13698 1873 aa12.75□□□□□ -0.37
ATG4A-206ENST00000457035 DALRD3Q5D0E6 543 aaKnown RBP12.75□□□□□ -0.37
ATG4A-206ENST00000457035 TTLL6Q8N841 843 aa12.75□□□□□ -0.37
ATG4A-206ENST00000457035 CDHR2Q9BYE9 1310 aa12.75□□□□□ -0.37
ATG4A-206ENST00000457035 API5Q9BZZ5 524 aaKnown RBP12.75□□□□□ -0.37
ATG4A-206ENST00000457035 SRCIN1Q9C0H9 1055 aa12.75□□□□□ -0.37
ATG4A-206ENST00000457035 KIF16BQ96L93 1317 aa12.74□□□□□ -0.37
ATG4A-206ENST00000457035 IPO8O15397 1037 aaKnown RBP12.74□□□□□ -0.37
ATG4A-206ENST00000457035 SF3B3Q15393 1217 aaKnown RBP12.74□□□□□ -0.37
ATG4A-206ENST00000457035 CNKSR1Q969H4 720 aa12.74□□□□□ -0.37
ATG4A-206ENST00000457035 BCS1LQ9Y276 419 aa12.74□□□□□ -0.37
ATG4A-206ENST00000457035 PDE8AO60658 829 aa12.73□□□□□ -0.37
ATG4A-206ENST00000457035 TRIM27P14373 513 aa12.73□□□□□ -0.37
ATG4A-206ENST00000457035 ALDH1B1P30837 517 aa12.73□□□□□ -0.37
ATG4A-206ENST00000457035 ATF7IPQ6VMQ6 1270 aa12.73□□□□□ -0.37
ATG4A-206ENST00000457035 UBE3BQ7Z3V4 1068 aa12.73□□□□□ -0.37
ATG4A-206ENST00000457035 C7orf43Q8WVR3 580 aa12.73□□□□□ -0.37
ATG4A-206ENST00000457035 FRAT1Q92837 279 aaPredicted RBP12.73□□□□□ -0.37
ATG4A-206ENST00000457035 PLA2G12BQ9BX93 195 aa12.73□□□□□ -0.37
ATG4A-206ENST00000457035 RCAN3Q9UKA8 241 aa12.73□□□□□ -0.37
ATG4A-206ENST00000457035 CCDC88AQ3V6T2 1871 aa12.72□□□□□ -0.37
ATG4A-206ENST00000457035 GRM8O00222 908 aa12.72□□□□□ -0.37
ATG4A-206ENST00000457035 HSP90B1P14625 803 aaKnown RBP12.72□□□□□ -0.37
ATG4A-206ENST00000457035 CD44P16070 742 aaKnown RBP12.72□□□□□ -0.37
ATG4A-206ENST00000457035 ZKSCAN2Q63HK3 967 aa12.72□□□□□ -0.37
ATG4A-206ENST00000457035 RBM17Q96I25 401 aaKnown RBP12.72□□□□□ -0.37
ATG4A-206ENST00000457035 CRAMP1Q96RY5 1269 aa12.72□□□□□ -0.37
ATG4A-206ENST00000457035 USP44Q9H0E7 712 aa12.72□□□□□ -0.37
ATG4A-206ENST00000457035 TNNQ9UQP3 1299 aa12.72□□□□□ -0.37
ATG4A-206ENST00000457035 SBF1O95248 1867 aa12.72□□□□□ -0.37
ATG4A-206ENST00000457035 UTYO14607 1347 aa12.71□□□□□ -0.37
ATG4A-206ENST00000457035 NBPF7P0C2Y1 421 aaPredicted RBP12.71□□□□□ -0.37
ATG4A-206ENST00000457035 CCT4P50991 539 aaKnown RBP12.71□□□□□ -0.37
ATG4A-206ENST00000457035 INTS3Q68E01 1043 aaKnown RBP12.71□□□□□ -0.37
ATG4A-206ENST00000457035 TTLL11Q8NHH1 800 aa12.71□□□□□ -0.37
ATG4A-206ENST00000457035 RPGRQ92834 1020 aaKnown RBP12.71□□□□□ -0.37
ATG4A-206ENST00000457035 C9orf78Q9NZ63 289 aaPredicted RBP12.71□□□□□ -0.37
ATG4A-206ENST00000457035 ABCC4O15439 1325 aa12.7□□□□□ -0.38
ATG4A-206ENST00000457035 CSF1RP07333 972 aa12.7□□□□□ -0.38
ATG4A-206ENST00000457035 PRPF40BQ6NWY9 871 aaKnown RBP12.7□□□□□ -0.38
ATG4A-206ENST00000457035 KAZALD1Q96I82 304 aa12.7□□□□□ -0.38
ATG4A-206ENST00000457035 FBXO3Q9UK99 471 aa12.7□□□□□ -0.38
ATG4A-206ENST00000457035 FER1L6Q2WGJ9 1857 aa12.7□□□□□ -0.38
ATG4A-206ENST00000457035 C21orf2O43822 256 aa12.69□□□□□ -0.38
ATG4A-206ENST00000457035 BBOX1O75936 387 aa12.69□□□□□ -0.38
ATG4A-206ENST00000457035 CTSWP56202 376 aa12.69□□□□□ -0.38
ATG4A-206ENST00000457035 FOXO4P98177 505 aa12.69□□□□□ -0.38
ATG4A-206ENST00000457035 EPHA10Q5JZY3 1008 aa12.69□□□□□ -0.38
ATG4A-206ENST00000457035 DDX46Q7L014 1031 aaKnown RBP12.69□□□□□ -0.38
ATG4A-206ENST00000457035 CLUAP1Q96AJ1 413 aa12.69□□□□□ -0.38
ATG4A-206ENST00000457035 SEC31BQ9NQW1 1179 aa12.69□□□□□ -0.38
ATG4A-206ENST00000457035 RLBP1P12271 317 aa12.68□□□□□ -0.38
ATG4A-206ENST00000457035 GRAPQ13588 217 aa12.68□□□□□ -0.38
ATG4A-206ENST00000457035 CCDC152Q4G0S7 254 aa12.68□□□□□ -0.38
ATG4A-206ENST00000457035 ARHGAP27Q6ZUM4 889 aa12.68□□□□□ -0.38
ATG4A-206ENST00000457035 GRAPLQ8TC17 118 aaPredicted RBP12.68□□□□□ -0.38
ATG4A-206ENST00000457035 CELF1Q92879 486 aaKnown RBP12.68□□□□□ -0.38
ATG4A-206ENST00000457035 RPS8P62241 208 aaKnown RBP12.67□□□□□ -0.38
ATG4A-206ENST00000457035 OLFM4Q6UX06 510 aa12.67□□□□□ -0.38
ATG4A-206ENST00000457035 DZIP1LQ8IYY4 767 aaKnown RBP12.67□□□□□ -0.38
ATG4A-206ENST00000457035 TMEM57Q8N5G2 664 aa12.67□□□□□ -0.38
ATG4A-206ENST00000457035 SUCLG2Q96I99 432 aa12.67□□□□□ -0.38
ATG4A-206ENST00000457035 CCDC85AQ96PX6 553 aaPredicted RBP12.67□□□□□ -0.38
ATG4A-206ENST00000457035 COL4A1P02462 1669 aa12.67□□□□□ -0.38
ATG4A-206ENST00000457035 PLIN1O60240 522 aa12.66□□□□□ -0.38
ATG4A-206ENST00000457035 HSPA6P17066 643 aa12.66□□□□□ -0.38
ATG4A-206ENST00000457035 SLC51AQ86UW1 340 aa12.66□□□□□ -0.38
ATG4A-206ENST00000457035 SP8Q8IXZ3 490 aa12.66□□□□□ -0.38
ATG4A-206ENST00000457035 GREM2Q9H772 168 aa12.66□□□□□ -0.38
ATG4A-206ENST00000457035 ATP6V0A2Q9Y487 856 aa12.66□□□□□ -0.38
ATG4A-206ENST00000457035 RTL9Q8NET4 1388 aa12.66□□□□□ -0.38
ATG4A-206ENST00000457035 NFKBIEO00221 500 aa12.65□□□□□ -0.38
ATG4A-206ENST00000457035 KIF3CO14782 793 aa12.65□□□□□ -0.38
ATG4A-206ENST00000457035 PPEF1O14829 653 aaPredicted RBP12.65□□□□□ -0.38
ATG4A-206ENST00000457035 RABL6Q3YEC7 729 aaPredicted RBP12.65□□□□□ -0.38
ATG4A-206ENST00000457035 SOGA3Q5TF21 947 aa12.65□□□□□ -0.38
ATG4A-206ENST00000457035 CC2D2BQ6DHV5 1058 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms