RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 F6X3S4 739 aa25.38■■□□□ 1.65
COL9A3-202ENST00000452372 PCCAP05165 728 aaPredicted RBP25.38■■□□□ 1.65
COL9A3-202ENST00000452372 CWF19L2Q2TBE0 894 aaKnown RBP25.38■■□□□ 1.65
COL9A3-202ENST00000452372 RTL5Q5HYW3 569 aaPredicted RBP25.38■■□□□ 1.65
COL9A3-202ENST00000452372 RTKN2Q8IZC4 609 aa25.38■■□□□ 1.65
COL9A3-202ENST00000452372 LINS1Q8NG48 757 aa25.38■■□□□ 1.65
COL9A3-202ENST00000452372 RPGRQ92834 1020 aaKnown RBP25.38■■□□□ 1.65
COL9A3-202ENST00000452372 BCL2L13Q9BXK5 485 aa25.37■■□□□ 1.65
COL9A3-202ENST00000452372 PCNTO95613 3336 aa25.37■■□□□ 1.65
COL9A3-202ENST00000452372 PTPRCP08575 1304 aa25.37■■□□□ 1.65
COL9A3-202ENST00000452372 IRS4O14654 1257 aaPredicted RBP25.36■■□□□ 1.65
COL9A3-202ENST00000452372 SLC51AQ86UW1 340 aa25.36■■□□□ 1.65
COL9A3-202ENST00000452372 KLRG1Q96E93 195 aa25.36■■□□□ 1.65
COL9A3-202ENST00000452372 RBM17Q96I25 401 aaKnown RBP25.36■■□□□ 1.65
COL9A3-202ENST00000452372 CRAMP1Q96RY5 1269 aa25.36■■□□□ 1.65
COL9A3-202ENST00000452372 SMC4Q9NTJ3 1288 aa25.36■■□□□ 1.65
COL9A3-202ENST00000452372 DDX60Q8IY21 1712 aaKnown RBP25.36■■□□□ 1.65
COL9A3-202ENST00000452372 LAMB2P55268 1798 aa25.36■■□□□ 1.65
COL9A3-202ENST00000452372 POTEIP0CG38 1075 aa25.35■■□□□ 1.65
COL9A3-202ENST00000452372 POTEJP0CG39 1038 aa25.35■■□□□ 1.65
COL9A3-202ENST00000452372 HSP90B1P14625 803 aaKnown RBP25.35■■□□□ 1.65
COL9A3-202ENST00000452372 RARSP54136 660 aaKnown RBP25.34■■□□□ 1.65
COL9A3-202ENST00000452372 BRPF1P55201 1214 aaPredicted RBP25.34■■□□□ 1.65
COL9A3-202ENST00000452372 GCKRQ14397 625 aa25.34■■□□□ 1.65
COL9A3-202ENST00000452372 SF3B3Q15393 1217 aaKnown RBP25.34■■□□□ 1.65
COL9A3-202ENST00000452372 BEND3Q5T5X7 828 aa25.34■■□□□ 1.65
COL9A3-202ENST00000452372 JMYQ8N9B5 988 aa25.34■■□□□ 1.65
COL9A3-202ENST00000452372 L3MBTL3Q96JM7 780 aaPredicted RBP25.34■■□□□ 1.65
COL9A3-202ENST00000452372 JARID2Q92833 1246 aaPredicted RBP25.33■■□□□ 1.65
COL9A3-202ENST00000452372 CDHR2Q9BYE9 1310 aa25.33■■□□□ 1.64
COL9A3-202ENST00000452372 ZNF541Q9H0D2 1346 aa25.33■■□□□ 1.64
COL9A3-202ENST00000452372 H7C1W4 665 aa25.32■■□□□ 1.64
COL9A3-202ENST00000452372 IARSP41252 1262 aaKnown RBP25.32■■□□□ 1.64
COL9A3-202ENST00000452372 PSMD1Q99460 953 aa25.32■■□□□ 1.64
COL9A3-202ENST00000452372 FZD9O00144 591 aa25.31■■□□□ 1.64
COL9A3-202ENST00000452372 PDE8AO60658 829 aa25.3■■□□□ 1.64
COL9A3-202ENST00000452372 IFFO2Q5TF58 517 aa25.3■■□□□ 1.64
COL9A3-202ENST00000452372 CC2D2BQ6DHV5 1058 aa25.3■■□□□ 1.64
COL9A3-202ENST00000452372 SLC4A10Q6U841 1118 aa25.3■■□□□ 1.64
COL9A3-202ENST00000452372 DDX46Q7L014 1031 aaKnown RBP25.3■■□□□ 1.64
COL9A3-202ENST00000452372 SCN4AP35499 1836 aa25.3■■□□□ 1.64
COL9A3-202ENST00000452372 CHADLQ6NUI6 762 aa25.29■■□□□ 1.64
COL9A3-202ENST00000452372 TAF1DQ9H5J8 278 aaPredicted RBP25.29■■□□□ 1.64
COL9A3-202ENST00000452372 COL4A5P29400 1685 aa25.29■■□□□ 1.64
COL9A3-202ENST00000452372 ALDH1L1O75891 902 aa25.28■■□□□ 1.64
COL9A3-202ENST00000452372 UBE3BQ7Z3V4 1068 aa25.28■■□□□ 1.64
COL9A3-202ENST00000452372 SRCIN1Q9C0H9 1055 aa25.28■■□□□ 1.64
COL9A3-202ENST00000452372 NOB1Q9ULX3 412 aaKnown RBP25.28■■□□□ 1.64
COL9A3-202ENST00000452372 ABCC4O15439 1325 aa25.28■■□□□ 1.64
COL9A3-202ENST00000452372 BBOX1O75936 387 aa25.27■■□□□ 1.64
COL9A3-202ENST00000452372 CASP7P55210 303 aa25.27■■□□□ 1.64
COL9A3-202ENST00000452372 IQCA1LA6NCM1 817 aa25.25■■□□□ 1.63
COL9A3-202ENST00000452372 PPEF1O14829 653 aaPredicted RBP25.25■■□□□ 1.63
COL9A3-202ENST00000452372 GRAPQ13588 217 aa25.25■■□□□ 1.63
COL9A3-202ENST00000452372 GRAPLQ8TC17 118 aaPredicted RBP25.25■■□□□ 1.63
COL9A3-202ENST00000452372 PLA2G12BQ9BX93 195 aa25.25■■□□□ 1.63
COL9A3-202ENST00000452372 TAF1P21675 1872 aa25.24■■□□□ 1.63
COL9A3-202ENST00000452372 KIF16BQ96L93 1317 aa25.24■■□□□ 1.63
COL9A3-202ENST00000452372 CCDC152Q4G0S7 254 aa25.24■■□□□ 1.63
COL9A3-202ENST00000452372 ARHGAP45Q92619 1136 aa25.24■■□□□ 1.63
COL9A3-202ENST00000452372 GRM8O00222 908 aa25.23■■□□□ 1.63
COL9A3-202ENST00000452372 GRIPAP1Q4V328 841 aa25.23■■□□□ 1.63
COL9A3-202ENST00000452372 API5Q9BZZ5 524 aaKnown RBP25.23■■□□□ 1.63
COL9A3-202ENST00000452372 ATP6V0A2Q9Y487 856 aa25.23■■□□□ 1.63
COL9A3-202ENST00000452372 MYH3P11055 1940 aa25.23■■□□□ 1.63
COL9A3-202ENST00000452372 BCAR3O75815 825 aa25.22■■□□□ 1.63
COL9A3-202ENST00000452372 CTSWP56202 376 aa25.22■■□□□ 1.63
COL9A3-202ENST00000452372 SP8Q8IXZ3 490 aa25.22■■□□□ 1.63
COL9A3-202ENST00000452372 TTLL11Q8NHH1 800 aa25.22■■□□□ 1.63
COL9A3-202ENST00000452372 C9orf78Q9NZ63 289 aaPredicted RBP25.22■■□□□ 1.63
COL9A3-202ENST00000452372 ITGBL1O95965 494 aaPredicted RBP25.21■■□□□ 1.63
COL9A3-202ENST00000452372 TMC4Q7Z404 712 aa25.21■■□□□ 1.63
COL9A3-202ENST00000452372 LDHDQ86WU2 507 aa25.21■■□□□ 1.63
COL9A3-202ENST00000452372 GPC2Q8N158 579 aa25.21■■□□□ 1.63
COL9A3-202ENST00000452372 JDP2Q8WYK2 163 aa25.21■■□□□ 1.63
COL9A3-202ENST00000452372 CELF1Q92879 486 aaKnown RBP25.21■■□□□ 1.63
COL9A3-202ENST00000452372 TMX4Q9H1E5 349 aaPredicted RBP25.21■■□□□ 1.63
COL9A3-202ENST00000452372 HACL1Q9UJ83 578 aa25.21■■□□□ 1.63
COL9A3-202ENST00000452372 PASKQ96RG2 1323 aa25.2■■□□□ 1.62
COL9A3-202ENST00000452372 IPO8O15397 1037 aaKnown RBP25.2■■□□□ 1.62
COL9A3-202ENST00000452372 SEC31BQ9NQW1 1179 aa25.2■■□□□ 1.62
COL9A3-202ENST00000452372 ADAMTSL1Q8N6G6 1762 aa25.19■■□□□ 1.62
COL9A3-202ENST00000452372 EPHX2P34913 555 aa25.19■■□□□ 1.62
COL9A3-202ENST00000452372 RPS8P62241 208 aaKnown RBP25.19■■□□□ 1.62
COL9A3-202ENST00000452372 CCDC85AQ96PX6 553 aaPredicted RBP25.19■■□□□ 1.62
COL9A3-202ENST00000452372 UTYO14607 1347 aa25.18■■□□□ 1.62
COL9A3-202ENST00000452372 CSF1RP07333 972 aa25.18■■□□□ 1.62
COL9A3-202ENST00000452372 CCT4P50991 539 aaKnown RBP25.18■■□□□ 1.62
COL9A3-202ENST00000452372 LARGE2Q8N3Y3 721 aa25.18■■□□□ 1.62
COL9A3-202ENST00000452372 RTL9Q8NET4 1388 aa25.18■■□□□ 1.62
COL9A3-202ENST00000452372 RTFDC1Q9BY42 306 aaPredicted RBP25.17■■□□□ 1.62
COL9A3-202ENST00000452372 GREM2Q9H772 168 aa25.17■■□□□ 1.62
COL9A3-202ENST00000452372 CREBZFQ9NS37 354 aa25.17■■□□□ 1.62
COL9A3-202ENST00000452372 NBPF7P0C2Y1 421 aaPredicted RBP25.16■■□□□ 1.62
COL9A3-202ENST00000452372 FOXO4P98177 505 aa25.16■■□□□ 1.62
COL9A3-202ENST00000452372 LTBP1Q14766 1721 aa25.16■■□□□ 1.62
COL9A3-202ENST00000452372 EAPPQ56P03 285 aaPredicted RBP25.16■■□□□ 1.62
COL9A3-202ENST00000452372 COL4A1P02462 1669 aa25.16■■□□□ 1.62
COL9A3-202ENST00000452372 EIF6P56537 245 aaKnown RBP25.15■■□□□ 1.62
COL9A3-202ENST00000452372 ATF7IPQ6VMQ6 1270 aa25.15■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms