RNA–Protein interactions for RNA: ENST00000451716.5

COL27A1-202, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 2,865 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-202ENST00000451716 NECTIN1Q15223 517 aa14.49□□□□□ -0.09
COL27A1-202ENST00000451716 TCEANC2Q96MN5 208 aa14.49□□□□□ -0.09
COL27A1-202ENST00000451716 LIMCH1Q9UPQ0 1083 aa14.49□□□□□ -0.09
COL27A1-202ENST00000451716 ARFGEF2Q9Y6D5 1785 aa14.49□□□□□ -0.09
COL27A1-202ENST00000451716 KAT6BQ8WYB5 2073 aa14.49□□□□□ -0.09
COL27A1-202ENST00000451716 TPRNQ4KMQ1 711 aa14.48□□□□□ -0.09
COL27A1-202ENST00000451716 CREB3L3Q68CJ9 461 aa14.48□□□□□ -0.09
COL27A1-202ENST00000451716 ZNF594Q96JF6 807 aaPredicted RBP14.48□□□□□ -0.09
COL27A1-202ENST00000451716 CWC25Q9NXE8 425 aaPredicted RBP14.48□□□□□ -0.09
COL27A1-202ENST00000451716 PDRG1Q9NUG6 133 aa14.48□□□□□ -0.09
COL27A1-202ENST00000451716 ASAP1Q9ULH1 1129 aa14.48□□□□□ -0.09
COL27A1-202ENST00000451716 H7C1W4 665 aa14.48□□□□□ -0.09
COL27A1-202ENST00000451716 NKX1-1Q15270 411 aaPredicted RBP14.48□□□□□ -0.09
COL27A1-202ENST00000451716 ZSCAN23Q3MJ62 389 aa14.48□□□□□ -0.09
COL27A1-202ENST00000451716 CLCN1P35523 988 aa14.47□□□□□ -0.09
COL27A1-202ENST00000451716 DDX46Q7L014 1031 aaKnown RBP14.47□□□□□ -0.09
COL27A1-202ENST00000451716 CCDC83Q8IWF9 413 aa14.47□□□□□ -0.09
COL27A1-202ENST00000451716 MAP4K1Q92918 833 aa14.47□□□□□ -0.09
COL27A1-202ENST00000451716 NEUROD6Q96NK8 337 aa14.47□□□□□ -0.09
COL27A1-202ENST00000451716 CCDC85AQ96PX6 553 aaPredicted RBP14.47□□□□□ -0.09
COL27A1-202ENST00000451716 BTG4Q9NY30 223 aa14.47□□□□□ -0.09
COL27A1-202ENST00000451716 BCCIPQ9P287 314 aaKnown RBP eCLIP14.47□□□□□ -0.09
COL27A1-202ENST00000451716 TIMM10P62072 90 aa14.47□□□□□ -0.09
COL27A1-202ENST00000451716 SLFNL1Q499Z3 407 aa14.47□□□□□ -0.09
COL27A1-202ENST00000451716 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.47□□□□□ -0.09
COL27A1-202ENST00000451716 SEC62Q99442 399 aaKnown RBP14.47□□□□□ -0.09
COL27A1-202ENST00000451716 TMOD3Q9NYL9 352 aa14.47□□□□□ -0.09
COL27A1-202ENST00000451716 CYP46A1Q9Y6A2 500 aa14.47□□□□□ -0.09
COL27A1-202ENST00000451716 SLC27A2O14975 620 aa14.46□□□□□ -0.09
COL27A1-202ENST00000451716 ZKSCAN1P17029 563 aaPredicted RBP14.46□□□□□ -0.09
COL27A1-202ENST00000451716 CCDC129Q6ZRS4 1044 aa14.46□□□□□ -0.09
COL27A1-202ENST00000451716 PARP4Q9UKK3 1724 aaKnown RBP14.46□□□□□ -0.09
COL27A1-202ENST00000451716 PLEKHG2Q9H7P9 1386 aa14.46□□□□□ -0.09
COL27A1-202ENST00000451716 HIP1O00291 1037 aa14.46□□□□□ -0.1
COL27A1-202ENST00000451716 ATP5JP18859 108 aa14.46□□□□□ -0.1
COL27A1-202ENST00000451716 LRRC24Q50LG9 513 aa14.46□□□□□ -0.1
COL27A1-202ENST00000451716 NECAB1Q8N987 351 aa14.46□□□□□ -0.1
COL27A1-202ENST00000451716 ZSWIM6Q9HCJ5 1215 aa14.46□□□□□ -0.1
COL27A1-202ENST00000451716 KCPQ6ZWJ8 1503 aa14.46□□□□□ -0.1
COL27A1-202ENST00000451716 TMEM63CQ9P1W3 806 aa14.45□□□□□ -0.1
COL27A1-202ENST00000451716 RPAP1Q9BWH6 1393 aaPredicted RBP14.45□□□□□ -0.1
COL27A1-202ENST00000451716 ERBB4Q15303 1308 aa14.45□□□□□ -0.1
COL27A1-202ENST00000451716 ATG9AQ7Z3C6 839 aa14.45□□□□□ -0.1
COL27A1-202ENST00000451716 DNAJC10Q8IXB1 793 aa14.45□□□□□ -0.1
COL27A1-202ENST00000451716 PIGBQ92521 554 aa14.45□□□□□ -0.1
COL27A1-202ENST00000451716 ISY1Q9ULR0 285 aaKnown RBP14.44□□□□□ -0.1
COL27A1-202ENST00000451716 COL15A1P39059 1388 aa14.44□□□□□ -0.1
COL27A1-202ENST00000451716 SYT1P21579 422 aa14.44□□□□□ -0.1
COL27A1-202ENST00000451716 ME3Q16798 604 aa14.44□□□□□ -0.1
COL27A1-202ENST00000451716 VPS53Q5VIR6 699 aa14.44□□□□□ -0.1
COL27A1-202ENST00000451716 KCNB2Q92953 911 aa14.44□□□□□ -0.1
COL27A1-202ENST00000451716 PUS3Q9BZE2 481 aaKnown RBP14.44□□□□□ -0.1
COL27A1-202ENST00000451716 SMC3Q9UQE7 1217 aa14.44□□□□□ -0.1
COL27A1-202ENST00000451716 WDR33Q9C0J8 1336 aaKnown RBP14.44□□□□□ -0.1
COL27A1-202ENST00000451716 GADD45BO75293 160 aaPredicted RBP14.44□□□□□ -0.1
COL27A1-202ENST00000451716 CNKSR2Q8WXI2 1034 aa14.44□□□□□ -0.1
COL27A1-202ENST00000451716 LAMB4A4D0S4 1761 aa14.43□□□□□ -0.1
COL27A1-202ENST00000451716 TAF5LO75529 589 aa14.43□□□□□ -0.1
COL27A1-202ENST00000451716 ST3GAL1Q11201 340 aa14.43□□□□□ -0.1
COL27A1-202ENST00000451716 CCDC191Q8NCU4 936 aa14.43□□□□□ -0.1
COL27A1-202ENST00000451716 TPCN1Q9ULQ1 816 aa14.43□□□□□ -0.1
COL27A1-202ENST00000451716 MED23Q9ULK4 1368 aa14.43□□□□□ -0.1
COL27A1-202ENST00000451716 PRIM1P49642 420 aaKnown RBP14.43□□□□□ -0.1
COL27A1-202ENST00000451716 CNPY4Q8N129 248 aa14.43□□□□□ -0.1
COL27A1-202ENST00000451716 SYNE4Q8N205 404 aa14.43□□□□□ -0.1
COL27A1-202ENST00000451716 FAM89AQ96GI7 184 aa14.43□□□□□ -0.1
COL27A1-202ENST00000451716 TM6SF1Q9BZW5 370 aa14.43□□□□□ -0.1
COL27A1-202ENST00000451716 SYCE3A1L190 88 aa14.42□□□□□ -0.1
COL27A1-202ENST00000451716 GJB2P29033 226 aa14.42□□□□□ -0.1
COL27A1-202ENST00000451716 NASPP49321 788 aaPredicted RBP14.42□□□□□ -0.1
COL27A1-202ENST00000451716 SYTL4Q96C24 671 aaPredicted RBP14.42□□□□□ -0.1
COL27A1-202ENST00000451716 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.42□□□□□ -0.1
COL27A1-202ENST00000451716 TCHHQ07283 1943 aa14.42□□□□□ -0.1
COL27A1-202ENST00000451716 GOLIM4O00461 696 aa14.42□□□□□ -0.1
COL27A1-202ENST00000451716 STX6O43752 255 aa14.42□□□□□ -0.1
COL27A1-202ENST00000451716 ZNF445P59923 1031 aa14.42□□□□□ -0.1
COL27A1-202ENST00000451716 USP48Q86UV5 1035 aa14.42□□□□□ -0.1
COL27A1-202ENST00000451716 HAUS7Q99871 368 aa14.42□□□□□ -0.1
COL27A1-202ENST00000451716 SNRKQ9NRH2 765 aa14.41□□□□□ -0.1
COL27A1-202ENST00000451716 ATG3Q9NT62 314 aa14.41□□□□□ -0.1
COL27A1-202ENST00000451716 CNPY2Q9Y2B0 182 aa14.41□□□□□ -0.1
COL27A1-202ENST00000451716 SHANK3Q9BYB0 1731 aa14.41□□□□□ -0.1
COL27A1-202ENST00000451716 RBSNQ9H1K0 784 aa14.41□□□□□ -0.1
COL27A1-202ENST00000451716 UBR2Q8IWV8 1755 aa14.41□□□□□ -0.1
COL27A1-202ENST00000451716 ZNF609O15014 1411 aa14.41□□□□□ -0.1
COL27A1-202ENST00000451716 ABCA3Q99758 1704 aa14.41□□□□□ -0.1
COL27A1-202ENST00000451716 ZSCAN22P10073 491 aaPredicted RBP14.4□□□□□ -0.1
COL27A1-202ENST00000451716 GPTP24298 496 aa14.4□□□□□ -0.1
COL27A1-202ENST00000451716 BLOC1S2Q6QNY1 142 aa14.4□□□□□ -0.1
COL27A1-202ENST00000451716 SMAP1Q8IYB5 467 aaPredicted RBP14.4□□□□□ -0.1
COL27A1-202ENST00000451716 TNS2Q63HR2 1409 aa14.4□□□□□ -0.1
COL27A1-202ENST00000451716 EYA2O00167 538 aa14.4□□□□□ -0.1
COL27A1-202ENST00000451716 STK3Q13188 491 aa14.4□□□□□ -0.1
COL27A1-202ENST00000451716 TCIRG1Q13488 830 aa14.4□□□□□ -0.1
COL27A1-202ENST00000451716 RNF20Q5VTR2 975 aa14.4□□□□□ -0.1
COL27A1-202ENST00000451716 RNF216Q9NWF9 866 aaPredicted RBP14.4□□□□□ -0.1
COL27A1-202ENST00000451716 A0A0G2JS52 829 aa14.39□□□□□ -0.11
COL27A1-202ENST00000451716 A0A1B0GUL7 405 aa14.39□□□□□ -0.11
COL27A1-202ENST00000451716 PSMA5P28066 241 aa14.39□□□□□ -0.11
COL27A1-202ENST00000451716 IL15P40933 162 aaPredicted RBP14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms