RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 DEPDC5O75140 1603 aa9.12□□□□□ -0.95
USP49-205ENST00000448078 POLR1AO95602 1720 aaPredicted RBP9.11□□□□□ -0.95
USP49-205ENST00000448078 SPATA31A6Q5VVP1 1343 aa9.11□□□□□ -0.95
USP49-205ENST00000448078 SERTM1A2A2V5 107 aa9.11□□□□□ -0.95
USP49-205ENST00000448078 LTKP29376 864 aa9.11□□□□□ -0.95
USP49-205ENST00000448078 MTFR1Q15390 333 aa9.11□□□□□ -0.95
USP49-205ENST00000448078 SCG3Q8WXD2 468 aaKnown RBP9.11□□□□□ -0.95
USP49-205ENST00000448078 VTI1AQ96AJ9 217 aa9.11□□□□□ -0.95
USP49-205ENST00000448078 TSPAN10Q9H1Z9 355 aaPredicted RBP9.11□□□□□ -0.95
USP49-205ENST00000448078 TIMELESSQ9UNS1 1208 aa9.11□□□□□ -0.95
USP49-205ENST00000448078 PLXNC1O60486 1568 aa9.11□□□□□ -0.95
USP49-205ENST00000448078 MSH6P52701 1360 aa9.11□□□□□ -0.95
USP49-205ENST00000448078 ADGBQ8N7X0 1667 aa9.1□□□□□ -0.95
USP49-205ENST00000448078 GPR25O00155 361 aa9.1□□□□□ -0.95
USP49-205ENST00000448078 PSMA6P60900 246 aaKnown RBP9.1□□□□□ -0.95
USP49-205ENST00000448078 L3MBTL2Q969R5 705 aa9.1□□□□□ -0.95
USP49-205ENST00000448078 ZNF837Q96EG3 531 aaPredicted RBP9.1□□□□□ -0.95
USP49-205ENST00000448078 GMCL1Q96IK5 515 aa9.1□□□□□ -0.95
USP49-205ENST00000448078 CNTNAP3BQ96NU0 1288 aa9.1□□□□□ -0.95
USP49-205ENST00000448078 CNTNAP3Q9BZ76 1288 aa9.1□□□□□ -0.95
USP49-205ENST00000448078 CUEDC1Q9NWM3 386 aaPredicted RBP9.1□□□□□ -0.95
USP49-205ENST00000448078 USP3Q9Y6I4 520 aa9.1□□□□□ -0.95
USP49-205ENST00000448078 NEURL4Q96JN8 1562 aa9.1□□□□□ -0.95
USP49-205ENST00000448078 TMEM94Q12767 1356 aa9.1□□□□□ -0.95
USP49-205ENST00000448078 RNF17Q9BXT8 1623 aaKnown RBP9.09□□□□□ -0.95
USP49-205ENST00000448078 SCAF11Q99590 1463 aaKnown RBP9.09□□□□□ -0.95
USP49-205ENST00000448078 FYCO1Q9BQS8 1478 aa9.09□□□□□ -0.95
USP49-205ENST00000448078 M0R2N6 131 aa9.09□□□□□ -0.95
USP49-205ENST00000448078 ATF3P18847 181 aa9.09□□□□□ -0.95
USP49-205ENST00000448078 NOS2P35228 1153 aa9.09□□□□□ -0.95
USP49-205ENST00000448078 PBXIP1Q96AQ6 731 aa9.09□□□□□ -0.95
USP49-205ENST00000448078 COL25A1Q9BXS0 654 aaPredicted RBP9.09□□□□□ -0.95
USP49-205ENST00000448078 CDC42BPAQ5VT25 1732 aa9.08□□□□□ -0.96
USP49-205ENST00000448078 IQGAP1P46940 1657 aa9.08□□□□□ -0.96
USP49-205ENST00000448078 INSM1Q01101 510 aaPredicted RBP9.08□□□□□ -0.96
USP49-205ENST00000448078 DBN1Q16643 649 aa9.08□□□□□ -0.96
USP49-205ENST00000448078 NGLY1Q96IV0 654 aa9.08□□□□□ -0.96
USP49-205ENST00000448078 SLC26A8Q96RN1 970 aa9.08□□□□□ -0.96
USP49-205ENST00000448078 PHF24Q9UPV7 400 aa9.08□□□□□ -0.96
USP49-205ENST00000448078 HCN4Q9Y3Q4 1203 aa9.08□□□□□ -0.96
USP49-205ENST00000448078 LRRC9Q6ZRR7 1453 aa9.08□□□□□ -0.96
USP49-205ENST00000448078 INO80Q9ULG1 1556 aaPredicted RBP9.07□□□□□ -0.96
USP49-205ENST00000448078 C1orf216Q8TAB5 229 aa9.07□□□□□ -0.96
USP49-205ENST00000448078 RHPN1Q8TCX5 695 aa9.07□□□□□ -0.96
USP49-205ENST00000448078 NANOS1Q8WY41 292 aaKnown RBP9.07□□□□□ -0.96
USP49-205ENST00000448078 ATAD2Q6PL18 1390 aa9.07□□□□□ -0.96
USP49-205ENST00000448078 SYNMO15061 1565 aa9.07□□□□□ -0.96
USP49-205ENST00000448078 ACIN1Q9UKV3 1341 aaKnown RBP9.06□□□□□ -0.96
USP49-205ENST00000448078 PPP1R15AO75807 674 aaPredicted RBP9.06□□□□□ -0.96
USP49-205ENST00000448078 VSIG8P0DPA2 414 aa9.06□□□□□ -0.96
USP49-205ENST00000448078 TEAD4Q15561 434 aa9.06□□□□□ -0.96
USP49-205ENST00000448078 GPR161Q8N6U8 529 aaKnown RBP9.06□□□□□ -0.96
USP49-205ENST00000448078 IQSEC3Q9UPP2 1182 aaPredicted RBP9.06□□□□□ -0.96
USP49-205ENST00000448078 KANK1Q14678 1352 aa9.06□□□□□ -0.96
USP49-205ENST00000448078 MBD5Q9P267 1494 aa9.06□□□□□ -0.96
USP49-205ENST00000448078 CCDC141Q6ZP82 1450 aa9.05□□□□□ -0.96
USP49-205ENST00000448078 A0A1W2PNR3 127 aa9.05□□□□□ -0.96
USP49-205ENST00000448078 FOXK2Q01167 660 aa9.05□□□□□ -0.96
USP49-205ENST00000448078 FIGNL1Q6PIW4 674 aa9.05□□□□□ -0.96
USP49-205ENST00000448078 ZDHHC3Q9NYG2 299 aa9.05□□□□□ -0.96
USP49-205ENST00000448078 NSFL1CQ9UNZ2 370 aaKnown RBP9.05□□□□□ -0.96
USP49-205ENST00000448078 ALKQ9UM73 1620 aa9.05□□□□□ -0.96
USP49-205ENST00000448078 TMEM2Q9UHN6 1383 aa9.04□□□□□ -0.96
USP49-205ENST00000448078 TXLNAP40222 546 aa9.04□□□□□ -0.96
USP49-205ENST00000448078 EPHA4P54764 986 aa9.04□□□□□ -0.96
USP49-205ENST00000448078 RBM6P78332 1123 aaKnown RBP9.04□□□□□ -0.96
USP49-205ENST00000448078 LBRQ14739 615 aaKnown RBP9.04□□□□□ -0.96
USP49-205ENST00000448078 C19orf44Q9H6X5 657 aa9.04□□□□□ -0.96
USP49-205ENST00000448078 QTRT2Q9H974 415 aaKnown RBP9.04□□□□□ -0.96
USP49-205ENST00000448078 SLC52A1Q9NWF4 448 aa9.04□□□□□ -0.96
USP49-205ENST00000448078 MX2P20592 715 aa9.03□□□□□ -0.96
USP49-205ENST00000448078 GAS2L2Q8NHY3 880 aa9.03□□□□□ -0.96
USP49-205ENST00000448078 ZDHHC1Q8WTX9 485 aa9.03□□□□□ -0.96
USP49-205ENST00000448078 PHACTR1Q9C0D0 580 aa9.03□□□□□ -0.96
USP49-205ENST00000448078 C1orf115Q9H7X2 142 aa9.03□□□□□ -0.96
USP49-205ENST00000448078 KHNYNO15037 678 aaKnown RBP9.02□□□□□ -0.97
USP49-205ENST00000448078 PRMT3O60678 531 aa9.02□□□□□ -0.97
USP49-205ENST00000448078 SH3PXD2AQ5TCZ1 1133 aa9.02□□□□□ -0.97
USP49-205ENST00000448078 LRRC69Q6ZNQ3 347 aa9.02□□□□□ -0.97
USP49-205ENST00000448078 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.02□□□□□ -0.97
USP49-205ENST00000448078 STK32AQ8WU08 396 aa9.02□□□□□ -0.97
USP49-205ENST00000448078 LRRC59Q96AG4 307 aaKnown RBP9.02□□□□□ -0.97
USP49-205ENST00000448078 FGD6Q6ZV73 1430 aa9.02□□□□□ -0.97
USP49-205ENST00000448078 ERVK-7P63135 1459 aa9.02□□□□□ -0.97
USP49-205ENST00000448078 DCDC2BA2VCK2 349 aa9.01□□□□□ -0.97
USP49-205ENST00000448078 ATXN7O15265 892 aaPredicted RBP9.01□□□□□ -0.97
USP49-205ENST00000448078 WIPF1O43516 503 aa9.01□□□□□ -0.97
USP49-205ENST00000448078 ATP4AP20648 1035 aa9.01□□□□□ -0.97
USP49-205ENST00000448078 IDI1Q13907 227 aa9.01□□□□□ -0.97
USP49-205ENST00000448078 LCE2CQ5TA81 110 aa9.01□□□□□ -0.97
USP49-205ENST00000448078 PRIMPOLQ96LW4 560 aa9.01□□□□□ -0.97
USP49-205ENST00000448078 ARXQ96QS3 562 aa9.01□□□□□ -0.97
USP49-205ENST00000448078 CRISPLD1Q9H336 500 aa9.01□□□□□ -0.97
USP49-205ENST00000448078 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.01□□□□□ -0.979e-11■■■■■ 86.5
USP49-205ENST00000448078 CEP162Q5TB80 1403 aa9□□□□□ -0.97
USP49-205ENST00000448078 FAM181BA6NEQ2 426 aa9□□□□□ -0.97
USP49-205ENST00000448078 EML1O00423 815 aa9□□□□□ -0.97
USP49-205ENST00000448078 DKK1O94907 266 aa9□□□□□ -0.97
USP49-205ENST00000448078 ATG7O95352 703 aa9□□□□□ -0.97
USP49-205ENST00000448078 IGFBP4P22692 258 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms