RNA–Protein interactions for RNA: ENST00000446317.1

SF3A3P1-201, Transcript of splicing factor 3a, subunit 3 pseudogene 1, humanhuman

BASIC

Gene SF3A3P1, Length 1,477 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3P1-201ENST00000446317 RNF216Q9NWF9 866 aaPredicted RBP9.46□□□□□ -0.9
SF3A3P1-201ENST00000446317 COL24A1Q17RW2 1714 aa9.45□□□□□ -0.9
SF3A3P1-201ENST00000446317 A0A0G2JLW4 131 aa9.45□□□□□ -0.9
SF3A3P1-201ENST00000446317 POLD1P28340 1107 aa9.45□□□□□ -0.9
SF3A3P1-201ENST00000446317 PTGER2P43116 358 aa9.45□□□□□ -0.9
SF3A3P1-201ENST00000446317 CTSWP56202 376 aa9.45□□□□□ -0.9
SF3A3P1-201ENST00000446317 TRIM28Q13263 835 aaKnown RBP9.45□□□□□ -0.9
SF3A3P1-201ENST00000446317 OLFM4Q6UX06 510 aa9.45□□□□□ -0.9
SF3A3P1-201ENST00000446317 C2CD5Q86YS7 1000 aa9.45□□□□□ -0.9
SF3A3P1-201ENST00000446317 ZNF622Q969S3 477 aaKnown RBP eCLIP9.45□□□□□ -0.9
SF3A3P1-201ENST00000446317 N4BP2Q86UW6 1770 aaPredicted RBP9.44□□□□□ -0.9
SF3A3P1-201ENST00000446317 QSER1Q2KHR3 1735 aa9.44□□□□□ -0.9
SF3A3P1-201ENST00000446317 DDX60Q8IY21 1712 aaKnown RBP9.44□□□□□ -0.9
SF3A3P1-201ENST00000446317 UTYO14607 1347 aa9.44□□□□□ -0.9
SF3A3P1-201ENST00000446317 SMARCA5O60264 1052 aaPredicted RBP9.44□□□□□ -0.9
SF3A3P1-201ENST00000446317 PDE8AO60658 829 aa9.44□□□□□ -0.9
SF3A3P1-201ENST00000446317 TAF7LQ5H9L4 462 aa9.44□□□□□ -0.9
SF3A3P1-201ENST00000446317 NLGN2Q8NFZ4 835 aa9.44□□□□□ -0.9
SF3A3P1-201ENST00000446317 CCDC136Q96JN2 1154 aa9.44□□□□□ -0.9
SF3A3P1-201ENST00000446317 PUS3Q9BZE2 481 aaKnown RBP9.44□□□□□ -0.9
SF3A3P1-201ENST00000446317 EXOC6BQ9Y2D4 811 aa9.44□□□□□ -0.9
SF3A3P1-201ENST00000446317 CACNA1FO60840 1977 aa9.44□□□□□ -0.9
SF3A3P1-201ENST00000446317 ITGA6P23229 1130 aa9.43□□□□□ -0.9
SF3A3P1-201ENST00000446317 HMGB2P26583 209 aaKnown RBP9.43□□□□□ -0.9
SF3A3P1-201ENST00000446317 HELBQ8NG08 1087 aaPredicted RBP9.43□□□□□ -0.9
SF3A3P1-201ENST00000446317 TTLL11Q8NHH1 800 aa9.43□□□□□ -0.9
SF3A3P1-201ENST00000446317 RPGRQ92834 1020 aaKnown RBP9.43□□□□□ -0.9
SF3A3P1-201ENST00000446317 NLRP3Q96P20 1036 aa9.43□□□□□ -0.9
SF3A3P1-201ENST00000446317 CDHR2Q9BYE9 1310 aa9.42□□□□□ -0.9
SF3A3P1-201ENST00000446317 DCAF8L1A6NGE4 600 aa9.42□□□□□ -0.9
SF3A3P1-201ENST00000446317 WTIPA6NIX2 430 aaPredicted RBP9.42□□□□□ -0.9
SF3A3P1-201ENST00000446317 SNAP23O00161 211 aa9.42□□□□□ -0.9
SF3A3P1-201ENST00000446317 DPEP1P16444 411 aa9.42□□□□□ -0.9
SF3A3P1-201ENST00000446317 OS9Q13438 667 aaPredicted RBP9.42□□□□□ -0.9
SF3A3P1-201ENST00000446317 LRRC24Q50LG9 513 aa9.42□□□□□ -0.9
SF3A3P1-201ENST00000446317 SLC16A10Q8TF71 515 aa9.42□□□□□ -0.9
SF3A3P1-201ENST00000446317 CELF1Q92879 486 aaKnown RBP9.42□□□□□ -0.9
SF3A3P1-201ENST00000446317 GPR101Q96P66 508 aaPredicted RBP9.42□□□□□ -0.9
SF3A3P1-201ENST00000446317 SPON1Q9HCB6 807 aa9.42□□□□□ -0.9
SF3A3P1-201ENST00000446317 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.42□□□□□ -0.9
SF3A3P1-201ENST00000446317 TAF1P21675 1872 aa9.42□□□□□ -0.9
SF3A3P1-201ENST00000446317 SURF6O75683 361 aaKnown RBP9.41□□□□□ -0.9
SF3A3P1-201ENST00000446317 ATP8B2P98198 1209 aa9.41□□□□□ -0.9
SF3A3P1-201ENST00000446317 IFIT5Q13325 482 aaKnown RBP9.41□□□□□ -0.9
SF3A3P1-201ENST00000446317 CCDC57Q2TAC2 916 aa9.41□□□□□ -0.9
SF3A3P1-201ENST00000446317 SGIP1Q9BQI5 828 aa9.41□□□□□ -0.9
SF3A3P1-201ENST00000446317 COL11A2P13942 1736 aaPredicted RBP9.41□□□□□ -0.9
SF3A3P1-201ENST00000446317 LAMB2P55268 1798 aa9.41□□□□□ -0.9
SF3A3P1-201ENST00000446317 ANKRD31Q8N7Z5 1873 aa9.4□□□□□ -0.9
SF3A3P1-201ENST00000446317 ANKRD18BA2A2Z9 1011 aa9.4□□□□□ -0.9
SF3A3P1-201ENST00000446317 CCDC152Q4G0S7 254 aa9.4□□□□□ -0.9
SF3A3P1-201ENST00000446317 DDX46Q7L014 1031 aaKnown RBP9.4□□□□□ -0.9
SF3A3P1-201ENST00000446317 FHDC1Q9C0D6 1143 aaPredicted RBP9.4□□□□□ -0.9
SF3A3P1-201ENST00000446317 IL1RAPL2Q9NP60 686 aa9.4□□□□□ -0.9
SF3A3P1-201ENST00000446317 CNNM1Q9NRU3 951 aa9.4□□□□□ -0.9
SF3A3P1-201ENST00000446317 PPP4R2Q9NY27 417 aa9.4□□□□□ -0.9
SF3A3P1-201ENST00000446317 SPEF2Q9C093 1822 aa9.4□□□□□ -0.9
SF3A3P1-201ENST00000446317 C10orf71Q711Q0 1435 aa9.4□□□□□ -0.91
SF3A3P1-201ENST00000446317 TAF5LO75529 589 aa9.4□□□□□ -0.91
SF3A3P1-201ENST00000446317 CSF1RP07333 972 aa9.4□□□□□ -0.91
SF3A3P1-201ENST00000446317 RFX5P48382 616 aaPredicted RBP9.4□□□□□ -0.91
SF3A3P1-201ENST00000446317 PTPN12Q05209 780 aaKnown RBP9.4□□□□□ -0.91
SF3A3P1-201ENST00000446317 RABL6Q3YEC7 729 aaPredicted RBP9.4□□□□□ -0.91
SF3A3P1-201ENST00000446317 SLC10A5Q5PT55 438 aa9.4□□□□□ -0.91
SF3A3P1-201ENST00000446317 BRIP1Q9BX63 1249 aa9.4□□□□□ -0.91
SF3A3P1-201ENST00000446317 H0YIN7 160 aa9.39□□□□□ -0.91
SF3A3P1-201ENST00000446317 PDE6BP35913 854 aa9.39□□□□□ -0.91
SF3A3P1-201ENST00000446317 TFCP2Q12800 502 aa9.39□□□□□ -0.91
SF3A3P1-201ENST00000446317 POLA2Q14181 598 aa9.39□□□□□ -0.91
SF3A3P1-201ENST00000446317 TSHZ3Q63HK5 1081 aa9.39□□□□□ -0.91
SF3A3P1-201ENST00000446317 C16orf71Q8IYS4 520 aaPredicted RBP9.39□□□□□ -0.91
SF3A3P1-201ENST00000446317 RBM17Q96I25 401 aaKnown RBP9.39□□□□□ -0.91
SF3A3P1-201ENST00000446317 PLA2G12BQ9BX93 195 aa9.39□□□□□ -0.91
SF3A3P1-201ENST00000446317 IBTKQ9P2D0 1353 aaPredicted RBP9.39□□□□□ -0.91
SF3A3P1-201ENST00000446317 NRXN2Q9P2S2 1712 aa9.39□□□□□ -0.91
SF3A3P1-201ENST00000446317 PPEF1O14829 653 aaPredicted RBP9.38□□□□□ -0.91
SF3A3P1-201ENST00000446317 RGL2O15211 777 aa9.38□□□□□ -0.91
SF3A3P1-201ENST00000446317 SRGNP10124 158 aa9.38□□□□□ -0.91
SF3A3P1-201ENST00000446317 SF3B3Q15393 1217 aaKnown RBP9.38□□□□□ -0.91
SF3A3P1-201ENST00000446317 ANKRD45Q5TZF3 282 aa9.38□□□□□ -0.91
SF3A3P1-201ENST00000446317 LDHAL6AQ6ZMR3 332 aa9.38□□□□□ -0.91
SF3A3P1-201ENST00000446317 ANKRD18AQ8IVF6 992 aa9.38□□□□□ -0.91
SF3A3P1-201ENST00000446317 RPAP2Q8IXW5 612 aaPredicted RBP9.38□□□□□ -0.91
SF3A3P1-201ENST00000446317 OTUD7AQ8TE49 926 aaPredicted RBP9.38□□□□□ -0.91
SF3A3P1-201ENST00000446317 SSH3Q8TE77 659 aa9.38□□□□□ -0.91
SF3A3P1-201ENST00000446317 MPHOSPH8Q99549 860 aa9.38□□□□□ -0.91
SF3A3P1-201ENST00000446317 LNPKQ9C0E8 428 aa9.38□□□□□ -0.91
SF3A3P1-201ENST00000446317 CHMP4BQ9H444 224 aaKnown RBP9.38□□□□□ -0.91
SF3A3P1-201ENST00000446317 RWDD1Q9H446 243 aaPredicted RBP9.38□□□□□ -0.91
SF3A3P1-201ENST00000446317 SRCAPQ6ZRS2 3230 aa9.38□□□□□ -0.91
SF3A3P1-201ENST00000446317 CACNA1SQ13698 1873 aa9.38□□□□□ -0.91
SF3A3P1-201ENST00000446317 C21orf2O43822 256 aa9.37□□□□□ -0.91
SF3A3P1-201ENST00000446317 HMMRO75330 724 aa9.37□□□□□ -0.91
SF3A3P1-201ENST00000446317 NPR1P16066 1061 aa9.37□□□□□ -0.91
SF3A3P1-201ENST00000446317 KCNA3P22001 575 aa9.37□□□□□ -0.91
SF3A3P1-201ENST00000446317 IGHMBP2P38935 993 aaKnown RBP9.37□□□□□ -0.91
SF3A3P1-201ENST00000446317 G3BP1Q13283 466 aaKnown RBP eCLIP9.37□□□□□ -0.91
SF3A3P1-201ENST00000446317 GRAPQ13588 217 aa9.37□□□□□ -0.91
SF3A3P1-201ENST00000446317 METTL24Q5JXM2 366 aa9.37□□□□□ -0.91
SF3A3P1-201ENST00000446317 PRPF40BQ6NWY9 871 aaKnown RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms