RNA–Protein interactions for RNA: ENST00000442625.2

MCF2L-218, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 2,710 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-218ENST00000442625 CHGBP05060 677 aa16.71■□□□□ 0.27
MCF2L-218ENST00000442625 ZKSCAN1P17029 563 aaPredicted RBP16.71■□□□□ 0.27
MCF2L-218ENST00000442625 UTP14CQ5TAP6 766 aaKnown RBP16.71■□□□□ 0.27
MCF2L-218ENST00000442625 EAF2Q96CJ1 260 aaPredicted RBP16.71■□□□□ 0.27
MCF2L-218ENST00000442625 EDC3Q96F86 508 aaKnown RBP16.71■□□□□ 0.27
MCF2L-218ENST00000442625 GPATCH3Q96I76 525 aa16.71■□□□□ 0.27
MCF2L-218ENST00000442625 BOLA2Q9H3K6 86 aa16.71■□□□□ 0.27
MCF2L-218ENST00000442625 DBF4Q9UBU7 674 aaPredicted RBP16.71■□□□□ 0.27
MCF2L-218ENST00000442625 CACNA1FO60840 1977 aa16.71■□□□□ 0.27
MCF2L-218ENST00000442625 JAK2O60674 1132 aa16.71■□□□□ 0.27
MCF2L-218ENST00000442625 EVI5LQ96CN4 794 aa16.71■□□□□ 0.27
MCF2L-218ENST00000442625 SUCLG2Q96I99 432 aa16.71■□□□□ 0.27
MCF2L-218ENST00000442625 SPATA32Q96LK8 384 aa16.71■□□□□ 0.27
MCF2L-218ENST00000442625 N4BP2Q86UW6 1770 aaPredicted RBP16.71■□□□□ 0.27
MCF2L-218ENST00000442625 A0A0D9SFI3 127 aa16.7■□□□□ 0.26
MCF2L-218ENST00000442625 CTIFO43310 598 aaKnown RBP16.7■□□□□ 0.26
MCF2L-218ENST00000442625 SASH1O94885 1247 aa16.7■□□□□ 0.26
MCF2L-218ENST00000442625 TNNT1P13805 278 aa16.7■□□□□ 0.26
MCF2L-218ENST00000442625 ZSCAN25Q6NSZ9 544 aa16.7■□□□□ 0.26
MCF2L-218ENST00000442625 CACTINQ8WUQ7 758 aaKnown RBP16.7■□□□□ 0.26
MCF2L-218ENST00000442625 FBXW7Q969H0 707 aa16.7■□□□□ 0.26
MCF2L-218ENST00000442625 NDUFB9Q9Y6M9 179 aa16.7■□□□□ 0.26
MCF2L-218ENST00000442625 MTX1Q13505 466 aa16.7■□□□□ 0.26
MCF2L-218ENST00000442625 BICC1Q9H694 974 aaKnown RBP16.7■□□□□ 0.26
MCF2L-218ENST00000442625 SH2B1Q9NRF2 756 aaPredicted RBP16.7■□□□□ 0.26
MCF2L-218ENST00000442625 PHF8Q9UPP1 1060 aa16.7■□□□□ 0.26
MCF2L-218ENST00000442625 MARF1Q9Y4F3 1742 aaKnown RBP16.7■□□□□ 0.26
MCF2L-218ENST00000442625 SLC27A2O14975 620 aa16.69■□□□□ 0.26
MCF2L-218ENST00000442625 HOXB7P09629 217 aa16.69■□□□□ 0.26
MCF2L-218ENST00000442625 PGBD1Q96JS3 809 aa16.69■□□□□ 0.26
MCF2L-218ENST00000442625 ZSCAN31Q96LW9 406 aaPredicted RBP16.69■□□□□ 0.26
MCF2L-218ENST00000442625 USP27XA6NNY8 438 aa16.69■□□□□ 0.26
MCF2L-218ENST00000442625 VGLL3A8MV65 326 aa16.69■□□□□ 0.26
MCF2L-218ENST00000442625 ZNF75DP51815 510 aa16.69■□□□□ 0.26
MCF2L-218ENST00000442625 TMED8Q6PL24 325 aaPredicted RBP16.69■□□□□ 0.26
MCF2L-218ENST00000442625 BICD2Q8TD16 824 aa16.69■□□□□ 0.26
MCF2L-218ENST00000442625 KAZALD1Q96I82 304 aa16.69■□□□□ 0.26
MCF2L-218ENST00000442625 AKAP4Q5JQC9 854 aa16.69■□□□□ 0.26
MCF2L-218ENST00000442625 KSR2Q6VAB6 950 aa16.69■□□□□ 0.26
MCF2L-218ENST00000442625 ERCC4Q92889 916 aaPredicted RBP16.69■□□□□ 0.26
MCF2L-218ENST00000442625 TM6SF1Q9BZW5 370 aa16.69■□□□□ 0.26
MCF2L-218ENST00000442625 GIGYF1O75420 1035 aaPredicted RBP16.68■□□□□ 0.26
MCF2L-218ENST00000442625 LEO1Q8WVC0 666 aaPredicted RBP16.68■□□□□ 0.26
MCF2L-218ENST00000442625 FSD1Q9BTV5 496 aa16.68■□□□□ 0.26
MCF2L-218ENST00000442625 FTOQ9C0B1 505 aaKnown RBP eCLIP16.68■□□□□ 0.26
MCF2L-218ENST00000442625 ZNF165P49910 485 aa16.68■□□□□ 0.26
MCF2L-218ENST00000442625 TPD52L1Q16890 204 aaPredicted RBP16.68■□□□□ 0.26
MCF2L-218ENST00000442625 ZNF589Q86UQ0 364 aaPredicted RBP16.68■□□□□ 0.26
MCF2L-218ENST00000442625 MAP4K1Q92918 833 aa16.68■□□□□ 0.26
MCF2L-218ENST00000442625 LRRC2Q9BYS8 371 aa16.68■□□□□ 0.26
MCF2L-218ENST00000442625 CLIP2Q9UDT6 1046 aa16.68■□□□□ 0.26
MCF2L-218ENST00000442625 RNMTO43148 476 aaKnown RBP16.67■□□□□ 0.26
MCF2L-218ENST00000442625 G3BP1Q13283 466 aaKnown RBP eCLIP16.67■□□□□ 0.26
MCF2L-218ENST00000442625 TOB2Q14106 344 aaPredicted RBP16.67■□□□□ 0.26
MCF2L-218ENST00000442625 KCNB2Q92953 911 aa16.67■□□□□ 0.26
MCF2L-218ENST00000442625 HMGB1P09429 215 aaKnown RBP16.67■□□□□ 0.26
MCF2L-218ENST00000442625 FAM193AP78312 1265 aa16.67■□□□□ 0.26
MCF2L-218ENST00000442625 C1orf141Q5JVX7 400 aa16.67■□□□□ 0.26
MCF2L-218ENST00000442625 ERC1Q8IUD2 1116 aa16.67■□□□□ 0.26
MCF2L-218ENST00000442625 PXDNQ92626 1479 aa16.66■□□□□ 0.26
MCF2L-218ENST00000442625 GRM8O00222 908 aa16.66■□□□□ 0.26
MCF2L-218ENST00000442625 ALDH1L1O75891 902 aa16.66■□□□□ 0.26
MCF2L-218ENST00000442625 TPM3P06753 285 aa16.66■□□□□ 0.26
MCF2L-218ENST00000442625 PLEKHO1Q53GL0 409 aaPredicted RBP16.66■□□□□ 0.26
MCF2L-218ENST00000442625 LMOD2Q6P5Q4 547 aa16.66■□□□□ 0.26
MCF2L-218ENST00000442625 BLOC1S2Q6QNY1 142 aa16.66■□□□□ 0.26
MCF2L-218ENST00000442625 ANKARQ7Z5J8 1434 aa16.66■□□□□ 0.26
MCF2L-218ENST00000442625 PSME1Q06323 249 aa16.66■□□□□ 0.26
MCF2L-218ENST00000442625 ESCO1Q5FWF5 840 aa16.66■□□□□ 0.26
MCF2L-218ENST00000442625 PLA2G4DQ86XP0 818 aa16.66■□□□□ 0.26
MCF2L-218ENST00000442625 THEMISQ8N1K5 641 aaPredicted RBP16.66■□□□□ 0.26
MCF2L-218ENST00000442625 NPHP1O15259 732 aa16.65■□□□□ 0.26
MCF2L-218ENST00000442625 C11orf57Q6ZUT1 292 aaPredicted RBP16.65■□□□□ 0.26
MCF2L-218ENST00000442625 SYTL4Q96C24 671 aaPredicted RBP16.65■□□□□ 0.26
MCF2L-218ENST00000442625 GTPBP4Q9BZE4 634 aaKnown RBP16.65■□□□□ 0.26
MCF2L-218ENST00000442625 TRMT1Q9NXH9 659 aaKnown RBP16.65■□□□□ 0.26
MCF2L-218ENST00000442625 CRYBG1Q9Y4K1 1723 aa16.65■□□□□ 0.26
MCF2L-218ENST00000442625 IRX3P78415 501 aaPredicted RBP16.65■□□□□ 0.26
MCF2L-218ENST00000442625 GRIPAP1Q4V328 841 aa16.65■□□□□ 0.26
MCF2L-218ENST00000442625 MED1Q15648 1581 aaPredicted RBP16.64■□□□□ 0.25
MCF2L-218ENST00000442625 MYL6BP14649 208 aa16.64■□□□□ 0.25
MCF2L-218ENST00000442625 CLSTN2Q9H4D0 955 aa16.64■□□□□ 0.25
MCF2L-218ENST00000442625 ARHGAP23Q9P227 1491 aa16.64■□□□□ 0.25
MCF2L-218ENST00000442625 PATL2C9JE40 543 aaKnown RBP16.63■□□□□ 0.25
MCF2L-218ENST00000442625 SLC39A6Q13433 755 aa16.63■□□□□ 0.25
MCF2L-218ENST00000442625 CCDC129Q6ZRS4 1044 aa16.63■□□□□ 0.25
MCF2L-218ENST00000442625 FILIP1Q7Z7B0 1213 aa16.63■□□□□ 0.25
MCF2L-218ENST00000442625 CTNNA3Q9UI47 895 aa16.63■□□□□ 0.25
MCF2L-218ENST00000442625 USP16Q9Y5T5 823 aa16.63■□□□□ 0.25
MCF2L-218ENST00000442625 SLIT1O75093 1534 aa16.63■□□□□ 0.25
MCF2L-218ENST00000442625 LTN1O94822 1766 aa16.63■□□□□ 0.25
MCF2L-218ENST00000442625 RPS6KB1P23443 525 aa16.63■□□□□ 0.25
MCF2L-218ENST00000442625 PSMA5P28066 241 aa16.63■□□□□ 0.25
MCF2L-218ENST00000442625 PIP4K2AP48426 406 aaPredicted RBP16.63■□□□□ 0.25
MCF2L-218ENST00000442625 CCDC112Q8NEF3 446 aa16.63■□□□□ 0.25
MCF2L-218ENST00000442625 LINS1Q8NG48 757 aa16.63■□□□□ 0.25
MCF2L-218ENST00000442625 BRF1Q92994 677 aa16.63■□□□□ 0.25
MCF2L-218ENST00000442625 SMTNL1A8MU46 457 aa16.62■□□□□ 0.25
MCF2L-218ENST00000442625 CLSTN1O94985 981 aa16.62■□□□□ 0.25
MCF2L-218ENST00000442625 IGKV5-2P06315 115 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms