RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 IQCA1LA6NCM1 817 aa10.21□□□□□ -0.77
VPS50-204ENST00000438395 HTRA3P83110 453 aa10.21□□□□□ -0.77
VPS50-204ENST00000438395 NFE2L2Q16236 605 aa10.21□□□□□ -0.77
VPS50-204ENST00000438395 ZNF687Q8N1G0 1237 aa10.21□□□□□ -0.77
VPS50-204ENST00000438395 DNAJC5GQ8N7S2 189 aa10.21□□□□□ -0.77
VPS50-204ENST00000438395 NBPF26B4DH59 902 aa10.2□□□□□ -0.78
VPS50-204ENST00000438395 ALDH1B1P30837 517 aa10.2□□□□□ -0.78
VPS50-204ENST00000438395 PRELPP51888 382 aa10.2□□□□□ -0.78
VPS50-204ENST00000438395 LMOD3Q0VAK6 560 aa10.2□□□□□ -0.78
VPS50-204ENST00000438395 NBPF10Q6P3W6 841 aaKnown RBP10.2□□□□□ -0.78
VPS50-204ENST00000438395 TIAM2Q8IVF5 1701 aa10.2□□□□□ -0.78
VPS50-204ENST00000438395 RTKN2Q8IZC4 609 aa10.2□□□□□ -0.78
VPS50-204ENST00000438395 NBPF15Q8N660 670 aa10.2□□□□□ -0.78
VPS50-204ENST00000438395 RPGRQ92834 1020 aaKnown RBP10.2□□□□□ -0.78
VPS50-204ENST00000438395 RRP7AQ9Y3A4 280 aaKnown RBP10.2□□□□□ -0.78
VPS50-204ENST00000438395 COL11A2P13942 1736 aaPredicted RBP10.19□□□□□ -0.78
VPS50-204ENST00000438395 WDR90Q96KV7 1748 aa10.19□□□□□ -0.78
VPS50-204ENST00000438395 MYL6BP14649 208 aa10.19□□□□□ -0.78
VPS50-204ENST00000438395 FKBP4Q02790 459 aaKnown RBP eCLIP10.19□□□□□ -0.78
VPS50-204ENST00000438395 PTCD2Q8WV60 388 aaKnown RBP10.19□□□□□ -0.78
VPS50-204ENST00000438395 TMX4Q9H1E5 349 aaPredicted RBP10.19□□□□□ -0.78
VPS50-204ENST00000438395 TSPYL4Q9UJ04 414 aa10.19□□□□□ -0.78
VPS50-204ENST00000438395 BCORQ6W2J9 1755 aa10.19□□□□□ -0.78
VPS50-204ENST00000438395 MAP3K15Q6ZN16 1313 aa10.18□□□□□ -0.78
VPS50-204ENST00000438395 ERVV-1B6SEH8 477 aa10.18□□□□□ -0.78
VPS50-204ENST00000438395 DDNO94850 711 aaPredicted RBP10.18□□□□□ -0.78
VPS50-204ENST00000438395 PPP1R15BQ5SWA1 713 aa10.18□□□□□ -0.78
VPS50-204ENST00000438395 JDP2Q8WYK2 163 aa10.18□□□□□ -0.78
VPS50-204ENST00000438395 THUMPD2Q9BTF0 503 aaKnown RBP10.18□□□□□ -0.78
VPS50-204ENST00000438395 ZBTB3Q9H5J0 574 aa10.18□□□□□ -0.78
VPS50-204ENST00000438395 ZNF277Q9NRM2 450 aaPredicted RBP10.18□□□□□ -0.78
VPS50-204ENST00000438395 ANKRD31Q8N7Z5 1873 aa10.17□□□□□ -0.78
VPS50-204ENST00000438395 ERBB4Q15303 1308 aa10.17□□□□□ -0.78
VPS50-204ENST00000438395 GPTP24298 496 aa10.17□□□□□ -0.78
VPS50-204ENST00000438395 EIF4A1P60842 406 aaKnown RBP10.17□□□□□ -0.78
VPS50-204ENST00000438395 RALBP1Q15311 655 aa10.17□□□□□ -0.78
VPS50-204ENST00000438395 HLFQ16534 295 aa10.17□□□□□ -0.78
VPS50-204ENST00000438395 JMYQ8N9B5 988 aa10.17□□□□□ -0.78
VPS50-204ENST00000438395 SBF1O95248 1867 aa10.17□□□□□ -0.78
VPS50-204ENST00000438395 IBTKQ9P2D0 1353 aaPredicted RBP10.16□□□□□ -0.78
VPS50-204ENST00000438395 KLRG2A4D1S0 409 aaPredicted RBP10.16□□□□□ -0.78
VPS50-204ENST00000438395 WDR43Q15061 677 aaKnown RBP eCLIP10.16□□□□□ -0.78
VPS50-204ENST00000438395 PARP10Q53GL7 1025 aa10.16□□□□□ -0.78
VPS50-204ENST00000438395 EAPPQ56P03 285 aaPredicted RBP10.16□□□□□ -0.78
VPS50-204ENST00000438395 CC2D2BQ6DHV5 1058 aa10.16□□□□□ -0.78
VPS50-204ENST00000438395 TTLL7Q6ZT98 887 aa10.16□□□□□ -0.78
VPS50-204ENST00000438395 LDHDQ86WU2 507 aa10.16□□□□□ -0.78
VPS50-204ENST00000438395 NUTM1Q86Y26 1132 aa10.16□□□□□ -0.78
VPS50-204ENST00000438395 PLEKHF1Q96S99 279 aa10.16□□□□□ -0.78
VPS50-204ENST00000438395 LARP6Q9BRS8 491 aaKnown RBP10.16□□□□□ -0.78
VPS50-204ENST00000438395 ABCC12Q96J65 1359 aa10.15□□□□□ -0.78
VPS50-204ENST00000438395 EIF2S2P20042 333 aaKnown RBP10.15□□□□□ -0.78
VPS50-204ENST00000438395 PDE4AP27815 886 aa10.15□□□□□ -0.78
VPS50-204ENST00000438395 LMOD1P29536 600 aaPredicted RBP10.15□□□□□ -0.78
VPS50-204ENST00000438395 IARSP41252 1262 aaKnown RBP10.15□□□□□ -0.78
VPS50-204ENST00000438395 EIF6P56537 245 aaKnown RBP10.15□□□□□ -0.78
VPS50-204ENST00000438395 RIPK4P57078 832 aa10.15□□□□□ -0.78
VPS50-204ENST00000438395 GRIPAP1Q4V328 841 aa10.15□□□□□ -0.78
VPS50-204ENST00000438395 PPP1R42Q7Z4L9 355 aa10.15□□□□□ -0.78
VPS50-204ENST00000438395 C7orf43Q8WVR3 580 aa10.15□□□□□ -0.78
VPS50-204ENST00000438395 RBM17Q96I25 401 aaKnown RBP10.15□□□□□ -0.78
VPS50-204ENST00000438395 HACL1Q9UJ83 578 aa10.15□□□□□ -0.78
VPS50-204ENST00000438395 LAMB4A4D0S4 1761 aa10.15□□□□□ -0.78
VPS50-204ENST00000438395 ZNF541Q9H0D2 1346 aa10.14□□□□□ -0.79
VPS50-204ENST00000438395 CRY2Q49AN0 593 aa10.14□□□□□ -0.79
VPS50-204ENST00000438395 POTEEQ6S8J3 1075 aa10.14□□□□□ -0.79
VPS50-204ENST00000438395 OLFM4Q6UX06 510 aa10.14□□□□□ -0.79
VPS50-204ENST00000438395 SYNE4Q8N205 404 aa10.14□□□□□ -0.79
VPS50-204ENST00000438395 BBXQ8WY36 941 aaPredicted RBP10.14□□□□□ -0.79
VPS50-204ENST00000438395 PSMD1Q99460 953 aa10.14□□□□□ -0.79
VPS50-204ENST00000438395 TAF1DQ9H5J8 278 aaPredicted RBP10.14□□□□□ -0.79
VPS50-204ENST00000438395 SLX4Q8IY92 1834 aa10.14□□□□□ -0.79
VPS50-204ENST00000438395 MYBBP1AQ9BQG0 1328 aaKnown RBP10.13□□□□□ -0.79
VPS50-204ENST00000438395 POTECB2RU33 542 aa10.13□□□□□ -0.79
VPS50-204ENST00000438395 PPEF1O14829 653 aaPredicted RBP10.13□□□□□ -0.79
VPS50-204ENST00000438395 EPHX2P34913 555 aa10.13□□□□□ -0.79
VPS50-204ENST00000438395 NEUROD2Q15784 382 aa10.13□□□□□ -0.79
VPS50-204ENST00000438395 HSP90AB3PQ58FF7 597 aa10.13□□□□□ -0.79
VPS50-204ENST00000438395 GIGYF2Q6Y7W6 1299 aaKnown RBP10.13□□□□□ -0.79
VPS50-204ENST00000438395 PNMA8AQ86V59 439 aaPredicted RBP10.13□□□□□ -0.79
VPS50-204ENST00000438395 TNS4Q8IZW8 715 aa10.13□□□□□ -0.79
VPS50-204ENST00000438395 LARGE2Q8N3Y3 721 aa10.13□□□□□ -0.79
VPS50-204ENST00000438395 NLRP3Q96P20 1036 aa10.13□□□□□ -0.79
VPS50-204ENST00000438395 UTP14AQ9BVJ6 771 aaKnown RBP10.13□□□□□ -0.79
VPS50-204ENST00000438395 BABAM1Q9NWV8 329 aa10.13□□□□□ -0.79
VPS50-204ENST00000438395 MKRN1Q9UHC7 482 aaKnown RBP10.13□□□□□ -0.79
VPS50-204ENST00000438395 GJA3Q9Y6H8 435 aa10.13□□□□□ -0.79
VPS50-204ENST00000438395 RIC1Q4ADV7 1423 aa10.13□□□□□ -0.79
VPS50-204ENST00000438395 FER1L6Q2WGJ9 1857 aa10.13□□□□□ -0.79
VPS50-204ENST00000438395 RNF123Q5XPI4 1314 aa10.12□□□□□ -0.79
VPS50-204ENST00000438395 UBN2Q6ZU65 1347 aa10.12□□□□□ -0.79
VPS50-204ENST00000438395 TCERG1O14776 1098 aaKnown RBP10.12□□□□□ -0.79
VPS50-204ENST00000438395 HSPA1AP0DMV8 641 aaKnown RBP10.12□□□□□ -0.79
VPS50-204ENST00000438395 HSPA1BP0DMV9 641 aaKnown RBP10.12□□□□□ -0.79
VPS50-204ENST00000438395 HOXA10P31260 410 aaPredicted RBP10.12□□□□□ -0.79
VPS50-204ENST00000438395 TMPOP42166 694 aaKnown RBP10.12□□□□□ -0.79
VPS50-204ENST00000438395 SUSD4Q5VX71 490 aa10.12□□□□□ -0.79
VPS50-204ENST00000438395 ANKRD13DQ6ZTN6 518 aa10.12□□□□□ -0.79
VPS50-204ENST00000438395 NIM1KQ8IY84 436 aa10.12□□□□□ -0.79
VPS50-204ENST00000438395 GPC2Q8N158 579 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms