RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 PRPF40BQ6NWY9 871 aaKnown RBP12.76□□□□□ -0.37
SCN4A-201ENST00000435607 FAM212AQ96EL1 285 aa12.76□□□□□ -0.37
SCN4A-201ENST00000435607 MAK16Q9BXY0 300 aaKnown RBP12.76□□□□□ -0.37
SCN4A-201ENST00000435607 ZC3H12CQ9C0D7 883 aaKnown RBP12.76□□□□□ -0.37
SCN4A-201ENST00000435607 NEMFO60524 1076 aa12.76□□□□□ -0.37
SCN4A-201ENST00000435607 NOL3O60936 208 aaKnown RBP12.76□□□□□ -0.37
SCN4A-201ENST00000435607 URI1O94763 535 aaPredicted RBP12.76□□□□□ -0.37
SCN4A-201ENST00000435607 MSH6P52701 1360 aa12.76□□□□□ -0.37
SCN4A-201ENST00000435607 FGD6Q6ZV73 1430 aa12.76□□□□□ -0.37
SCN4A-201ENST00000435607 DPH6Q7L8W6 267 aa12.75□□□□□ -0.37
SCN4A-201ENST00000435607 JAKMIP2Q96AA8 810 aa12.75□□□□□ -0.37
SCN4A-201ENST00000435607 METAP2P50579 478 aaKnown RBP eCLIP12.75□□□□□ -0.37
SCN4A-201ENST00000435607 CCDC89Q8N998 374 aa12.75□□□□□ -0.37
SCN4A-201ENST00000435607 LMBR1Q8WVP7 490 aa12.75□□□□□ -0.37
SCN4A-201ENST00000435607 PHF8Q9UPP1 1060 aa12.75□□□□□ -0.37
SCN4A-201ENST00000435607 CCDC183Q5T5S1 534 aa12.75□□□□□ -0.37
SCN4A-201ENST00000435607 CTR9Q6PD62 1173 aa12.75□□□□□ -0.37
SCN4A-201ENST00000435607 NCOA7Q8NI08 942 aa12.75□□□□□ -0.37
SCN4A-201ENST00000435607 CGNQ9P2M7 1197 aaKnown RBP12.75□□□□□ -0.37
SCN4A-201ENST00000435607 PRG4Q92954 1404 aaPredicted RBP12.75□□□□□ -0.37
SCN4A-201ENST00000435607 IFIT1BQ5T764 474 aaKnown RBP12.75□□□□□ -0.37
SCN4A-201ENST00000435607 GSDMBQ8TAX9 411 aa12.75□□□□□ -0.37
SCN4A-201ENST00000435607 CNNM2Q9H8M5 875 aa12.75□□□□□ -0.37
SCN4A-201ENST00000435607 EVI5LQ96CN4 794 aa12.75□□□□□ -0.37
SCN4A-201ENST00000435607 TRIM47Q96LD4 638 aa12.75□□□□□ -0.37
SCN4A-201ENST00000435607 CRCPO75575 148 aa12.75□□□□□ -0.37
SCN4A-201ENST00000435607 CAMK4Q16566 473 aa12.75□□□□□ -0.37
SCN4A-201ENST00000435607 PICK1Q9NRD5 415 aa12.75□□□□□ -0.37
SCN4A-201ENST00000435607 ALDH3A1P30838 453 aa12.74□□□□□ -0.37
SCN4A-201ENST00000435607 DNAAF4Q8WXU2 420 aa12.74□□□□□ -0.37
SCN4A-201ENST00000435607 TMOD4Q9NZQ9 345 aa12.74□□□□□ -0.37
SCN4A-201ENST00000435607 CUL4BQ13620 913 aa12.74□□□□□ -0.37
SCN4A-201ENST00000435607 JADE2Q9NQC1 790 aa12.74□□□□□ -0.37
SCN4A-201ENST00000435607 IVNS1ABPQ9Y6Y0 642 aa12.74□□□□□ -0.37
SCN4A-201ENST00000435607 GRIN2BQ13224 1484 aa12.74□□□□□ -0.37
SCN4A-201ENST00000435607 EEF2P13639 858 aaKnown RBP12.74□□□□□ -0.37
SCN4A-201ENST00000435607 ARID4AP29374 1257 aaPredicted RBP12.74□□□□□ -0.37
SCN4A-201ENST00000435607 TICAM2Q86XR7 235 aa12.74□□□□□ -0.37
SCN4A-201ENST00000435607 EXOC6BQ9Y2D4 811 aa12.74□□□□□ -0.37
SCN4A-201ENST00000435607 STAT6P42226 847 aa12.74□□□□□ -0.37
SCN4A-201ENST00000435607 ESR2Q92731 530 aa12.74□□□□□ -0.37
SCN4A-201ENST00000435607 TTC14Q96N46 770 aa12.74□□□□□ -0.37
SCN4A-201ENST00000435607 RBM27Q9P2N5 1060 aaKnown RBP12.74□□□□□ -0.37
SCN4A-201ENST00000435607 POLA1P09884 1462 aaPredicted RBP12.74□□□□□ -0.37
SCN4A-201ENST00000435607 KIF21BO75037 1637 aa12.73□□□□□ -0.37
SCN4A-201ENST00000435607 HSF2BPO75031 334 aa12.73□□□□□ -0.37
SCN4A-201ENST00000435607 WTAPQ15007 396 aa12.73□□□□□ -0.37
SCN4A-201ENST00000435607 CCDC6Q16204 474 aa12.73□□□□□ -0.37
SCN4A-201ENST00000435607 KRT28Q7Z3Y7 464 aa12.73□□□□□ -0.37
SCN4A-201ENST00000435607 NACA2Q9H009 215 aa12.73□□□□□ -0.37
SCN4A-201ENST00000435607 PFDN4Q9NQP4 134 aa12.73□□□□□ -0.37
SCN4A-201ENST00000435607 CTAGE1Q96RT6 745 aa12.73□□□□□ -0.37
SCN4A-201ENST00000435607 CCDC110Q8TBZ0 833 aa12.73□□□□□ -0.37
SCN4A-201ENST00000435607 HS2ST1Q7LGA3 356 aa12.73□□□□□ -0.37
SCN4A-201ENST00000435607 CALM1P0DP23 149 aa12.73□□□□□ -0.37
SCN4A-201ENST00000435607 CALM2P0DP24 149 aa12.73□□□□□ -0.37
SCN4A-201ENST00000435607 CALM3P0DP25 149 aa12.73□□□□□ -0.37
SCN4A-201ENST00000435607 GIPC1O14908 333 aa12.73□□□□□ -0.37
SCN4A-201ENST00000435607 NAP1L3Q99457 506 aaPredicted RBP12.73□□□□□ -0.37
SCN4A-201ENST00000435607 AKR1B10O60218 316 aa12.72□□□□□ -0.37
SCN4A-201ENST00000435607 CYLC1P35663 651 aaPredicted RBP12.72□□□□□ -0.37
SCN4A-201ENST00000435607 GUCY1B3Q02153 619 aa12.72□□□□□ -0.37
SCN4A-201ENST00000435607 CPLX3Q8WVH0 158 aa12.72□□□□□ -0.37
SCN4A-201ENST00000435607 TBC1D31Q96DN5 1066 aa12.72□□□□□ -0.37
SCN4A-201ENST00000435607 IL27Q8NEV9 243 aa12.72□□□□□ -0.37
SCN4A-201ENST00000435607 USP16Q9Y5T5 823 aa12.72□□□□□ -0.37
SCN4A-201ENST00000435607 CCDC102BQ68D86 513 aa12.72□□□□□ -0.37
SCN4A-201ENST00000435607 FSIP1Q8NA03 581 aa12.72□□□□□ -0.37
SCN4A-201ENST00000435607 FGD5Q6ZNL6 1462 aa12.72□□□□□ -0.37
SCN4A-201ENST00000435607 BACH1O14867 736 aa12.72□□□□□ -0.37
SCN4A-201ENST00000435607 ZFYP08048 801 aaPredicted RBP12.72□□□□□ -0.37
SCN4A-201ENST00000435607 PLCB3Q01970 1234 aa12.72□□□□□ -0.37
SCN4A-201ENST00000435607 SPOUT1Q5T280 376 aaKnown RBP12.72□□□□□ -0.37
SCN4A-201ENST00000435607 HACE1Q8IYU2 909 aa12.72□□□□□ -0.37
SCN4A-201ENST00000435607 PAIP2Q9BPZ3 127 aaKnown RBP12.72□□□□□ -0.37
SCN4A-201ENST00000435607 ZBTB3Q9H5J0 574 aa12.72□□□□□ -0.37
SCN4A-201ENST00000435607 TFCP2L1Q9NZI6 479 aa12.72□□□□□ -0.37
SCN4A-201ENST00000435607 FOXO3O43524 673 aa12.72□□□□□ -0.37
SCN4A-201ENST00000435607 STX1AQ16623 288 aa12.72□□□□□ -0.37
SCN4A-201ENST00000435607 CFAP157Q5JU67 520 aa12.72□□□□□ -0.37
SCN4A-201ENST00000435607 M0QZ92 97 aa12.71□□□□□ -0.37
SCN4A-201ENST00000435607 RBM26Q5T8P6 1007 aaKnown RBP12.71□□□□□ -0.37
SCN4A-201ENST00000435607 SIRT1Q96EB6 747 aa12.71□□□□□ -0.37
SCN4A-201ENST00000435607 SLC26A6Q9BXS9 759 aa12.71□□□□□ -0.37
SCN4A-201ENST00000435607 ZNF644Q9H582 1327 aaPredicted RBP12.71□□□□□ -0.37
SCN4A-201ENST00000435607 HMG20BQ9P0W2 317 aa12.71□□□□□ -0.37
SCN4A-201ENST00000435607 ATP6V1AP38606 617 aa12.71□□□□□ -0.37
SCN4A-201ENST00000435607 SATB1Q01826 763 aa12.71□□□□□ -0.37
SCN4A-201ENST00000435607 NCAPGQ9BPX3 1015 aa12.71□□□□□ -0.37
SCN4A-201ENST00000435607 DDX19AQ9NUU7 478 aaKnown RBP12.71□□□□□ -0.37
SCN4A-201ENST00000435607 MCM5P33992 734 aa12.71□□□□□ -0.37
SCN4A-201ENST00000435607 RNF34Q969K3 372 aa12.71□□□□□ -0.37
SCN4A-201ENST00000435607 USP25Q9UHP3 1055 aa12.71□□□□□ -0.37
SCN4A-201ENST00000435607 C9orf84Q5VXU9 1444 aa12.71□□□□□ -0.37
SCN4A-201ENST00000435607 F8W031 263 aaPredicted RBP12.71□□□□□ -0.38
SCN4A-201ENST00000435607 HEATR3Q7Z4Q2 680 aa12.71□□□□□ -0.38
SCN4A-201ENST00000435607 NSMCE1Q8WV22 266 aa12.71□□□□□ -0.38
SCN4A-201ENST00000435607 SPC25Q9HBM1 224 aa12.71□□□□□ -0.38
SCN4A-201ENST00000435607 FERMT3Q86UX7 667 aa12.71□□□□□ -0.38
SCN4A-201ENST00000435607 CDAN1Q8IWY9 1227 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms