RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 TBC1D2BQ9UPU7 963 aa14.07□□□□□ -0.16
LINC00539-203ENST00000434601 FER1L6Q2WGJ9 1857 aa14.07□□□□□ -0.16
LINC00539-203ENST00000434601 NUP98P52948 1817 aa14.06□□□□□ -0.16
LINC00539-203ENST00000434601 HMMRO75330 724 aa14.06□□□□□ -0.16
LINC00539-203ENST00000434601 NBPF7P0C2Y1 421 aaPredicted RBP14.06□□□□□ -0.16
LINC00539-203ENST00000434601 GCKRQ14397 625 aa14.06□□□□□ -0.16
LINC00539-203ENST00000434601 DZIP3Q86Y13 1208 aaKnown RBP14.06□□□□□ -0.16
LINC00539-203ENST00000434601 SMC5Q8IY18 1101 aa14.06□□□□□ -0.16
LINC00539-203ENST00000434601 ZNF622Q969S3 477 aaKnown RBP eCLIP14.06□□□□□ -0.16
LINC00539-203ENST00000434601 HDAC5Q9UQL6 1122 aa14.06□□□□□ -0.16
LINC00539-203ENST00000434601 ERVV-1B6SEH8 477 aa14.05□□□□□ -0.16
LINC00539-203ENST00000434601 ATP5J2-PTCD1G3V325 749 aa14.05□□□□□ -0.16
LINC00539-203ENST00000434601 HSP90AB3PQ58FF7 597 aa14.05□□□□□ -0.16
LINC00539-203ENST00000434601 ISCA1Q9BUE6 129 aa14.05□□□□□ -0.16
LINC00539-203ENST00000434601 CWC25Q9NXE8 425 aaPredicted RBP14.05□□□□□ -0.16
LINC00539-203ENST00000434601 CACNA1SQ13698 1873 aa14.05□□□□□ -0.16
LINC00539-203ENST00000434601 PCNTO95613 3336 aa14.05□□□□□ -0.16
LINC00539-203ENST00000434601 ST5P78524 1137 aa14.04□□□□□ -0.16
LINC00539-203ENST00000434601 TCIRG1Q13488 830 aa14.04□□□□□ -0.16
LINC00539-203ENST00000434601 SOGA3Q5TF21 947 aa14.04□□□□□ -0.16
LINC00539-203ENST00000434601 PRR5LQ6MZQ0 368 aa14.04□□□□□ -0.16
LINC00539-203ENST00000434601 GIGYF2Q6Y7W6 1299 aaKnown RBP14.04□□□□□ -0.16
LINC00539-203ENST00000434601 JMYQ8N9B5 988 aa14.04□□□□□ -0.16
LINC00539-203ENST00000434601 CNBD1Q8NA66 436 aa14.04□□□□□ -0.16
LINC00539-203ENST00000434601 CCDC191Q8NCU4 936 aa14.04□□□□□ -0.16
LINC00539-203ENST00000434601 CNKSR1Q969H4 720 aa14.04□□□□□ -0.16
LINC00539-203ENST00000434601 GCC1Q96CN9 775 aa14.04□□□□□ -0.16
LINC00539-203ENST00000434601 NFKBIEO00221 500 aa14.03□□□□□ -0.16
LINC00539-203ENST00000434601 CLEC4GQ6UXB4 293 aa14.03□□□□□ -0.16
LINC00539-203ENST00000434601 SUCLG2Q96I99 432 aa14.03□□□□□ -0.16
LINC00539-203ENST00000434601 ZNF652Q9Y2D9 606 aa14.03□□□□□ -0.16
LINC00539-203ENST00000434601 COL11A2P13942 1736 aaPredicted RBP14.03□□□□□ -0.16
LINC00539-203ENST00000434601 SLX4Q8IY92 1834 aa14.02□□□□□ -0.16
LINC00539-203ENST00000434601 LTBP3Q9NS15 1303 aa14.02□□□□□ -0.17
LINC00539-203ENST00000434601 C21orf2O43822 256 aa14.02□□□□□ -0.17
LINC00539-203ENST00000434601 CAMTA2O94983 1202 aa14.02□□□□□ -0.17
LINC00539-203ENST00000434601 ATP8B2P98198 1209 aa14.02□□□□□ -0.17
LINC00539-203ENST00000434601 TRIM28Q13263 835 aaKnown RBP14.02□□□□□ -0.17
LINC00539-203ENST00000434601 HLFQ16534 295 aa14.02□□□□□ -0.17
LINC00539-203ENST00000434601 ERFEQ4G0M1 354 aa14.02□□□□□ -0.17
LINC00539-203ENST00000434601 STYK1Q6J9G0 422 aa14.02□□□□□ -0.17
LINC00539-203ENST00000434601 RGL2O15211 777 aa14.01□□□□□ -0.17
LINC00539-203ENST00000434601 PRELPP51888 382 aa14.01□□□□□ -0.17
LINC00539-203ENST00000434601 MTX1Q13505 466 aa14.01□□□□□ -0.17
LINC00539-203ENST00000434601 UBE3BQ7Z3V4 1068 aa14.01□□□□□ -0.17
LINC00539-203ENST00000434601 MASTLQ96GX5 879 aa14.01□□□□□ -0.17
LINC00539-203ENST00000434601 TAOK3Q9H2K8 898 aa14.01□□□□□ -0.17
LINC00539-203ENST00000434601 DCTPP1Q9H773 170 aa14.01□□□□□ -0.17
LINC00539-203ENST00000434601 PNMA6EA0A0J9YXQ4 647 aa14□□□□□ -0.17
LINC00539-203ENST00000434601 SRGNP10124 158 aa14□□□□□ -0.17
LINC00539-203ENST00000434601 CASP7P55210 303 aa14□□□□□ -0.17
LINC00539-203ENST00000434601 HTRA3P83110 453 aa14□□□□□ -0.17
LINC00539-203ENST00000434601 NUCB1Q02818 461 aa14□□□□□ -0.17
LINC00539-203ENST00000434601 POLA2Q14181 598 aa14□□□□□ -0.17
LINC00539-203ENST00000434601 PPP1R42Q7Z4L9 355 aa14□□□□□ -0.17
LINC00539-203ENST00000434601 SKAP1Q86WV1 359 aa14□□□□□ -0.17
LINC00539-203ENST00000434601 NBPF5PQ86XG9 351 aaPredicted RBP14□□□□□ -0.17
LINC00539-203ENST00000434601 SSH3Q8TE77 659 aa14□□□□□ -0.17
LINC00539-203ENST00000434601 KAZALD1Q96I82 304 aa14□□□□□ -0.17
LINC00539-203ENST00000434601 BICC1Q9H694 974 aaKnown RBP14□□□□□ -0.17
LINC00539-203ENST00000434601 LAMB2P55268 1798 aa13.99□□□□□ -0.17
LINC00539-203ENST00000434601 H7C1W4 665 aa13.99□□□□□ -0.17
LINC00539-203ENST00000434601 SRGAP3O43295 1099 aa13.99□□□□□ -0.17
LINC00539-203ENST00000434601 TPTE2Q6XPS3 522 aa13.99□□□□□ -0.17
LINC00539-203ENST00000434601 NLRP10Q86W26 655 aa13.99□□□□□ -0.17
LINC00539-203ENST00000434601 CCDC24Q8N4L8 307 aa13.99□□□□□ -0.17
LINC00539-203ENST00000434601 ZNF219Q9P2Y4 722 aaPredicted RBP13.99□□□□□ -0.17
LINC00539-203ENST00000434601 GPTP24298 496 aa13.98□□□□□ -0.17
LINC00539-203ENST00000434601 RGS3P49796 1198 aa13.98□□□□□ -0.17
LINC00539-203ENST00000434601 PRPF40BQ6NWY9 871 aaKnown RBP13.98□□□□□ -0.17
LINC00539-203ENST00000434601 ZNF34Q8IZ26 560 aa13.98□□□□□ -0.17
LINC00539-203ENST00000434601 SCN4AP35499 1836 aa13.97□□□□□ -0.17
LINC00539-203ENST00000434601 UBN2Q6ZU65 1347 aa13.97□□□□□ -0.17
LINC00539-203ENST00000434601 POTECB2RU33 542 aa13.97□□□□□ -0.17
LINC00539-203ENST00000434601 PCCAP05165 728 aaPredicted RBP13.97□□□□□ -0.17
LINC00539-203ENST00000434601 RABL6Q3YEC7 729 aaPredicted RBP13.97□□□□□ -0.17
LINC00539-203ENST00000434601 ANKRD45Q5TZF3 282 aa13.97□□□□□ -0.17
LINC00539-203ENST00000434601 CHD1LQ86WJ1 897 aa13.97□□□□□ -0.17
LINC00539-203ENST00000434601 ZBTB38Q8NAP3 1195 aaPredicted RBP13.97□□□□□ -0.17
LINC00539-203ENST00000434601 JARID2Q92833 1246 aaPredicted RBP13.97□□□□□ -0.17
LINC00539-203ENST00000434601 CDHR2Q9BYE9 1310 aa13.96□□□□□ -0.17
LINC00539-203ENST00000434601 MYH3P11055 1940 aa13.96□□□□□ -0.17
LINC00539-203ENST00000434601 IQCA1LA6NCM1 817 aa13.96□□□□□ -0.17
LINC00539-203ENST00000434601 NPR1P16066 1061 aa13.96□□□□□ -0.17
LINC00539-203ENST00000434601 CCDC93Q567U6 631 aa13.96□□□□□ -0.17
LINC00539-203ENST00000434601 EPHA10Q5JZY3 1008 aa13.96□□□□□ -0.17
LINC00539-203ENST00000434601 LNPKQ9C0E8 428 aa13.96□□□□□ -0.17
LINC00539-203ENST00000434601 KLRG2A4D1S0 409 aaPredicted RBP13.95□□□□□ -0.18
LINC00539-203ENST00000434601 PDE4AP27815 886 aa13.95□□□□□ -0.18
LINC00539-203ENST00000434601 PARP10Q53GL7 1025 aa13.95□□□□□ -0.18
LINC00539-203ENST00000434601 ZBTB47Q9UFB7 747 aaPredicted RBP13.95□□□□□ -0.18
LINC00539-203ENST00000434601 NIP7Q9Y221 180 aaKnown RBP eCLIP13.95□□□□□ -0.18
LINC00539-203ENST00000434601 EXOC6BQ9Y2D4 811 aa13.95□□□□□ -0.18
LINC00539-203ENST00000434601 DDX60Q8IY21 1712 aaKnown RBP13.95□□□□□ -0.18
LINC00539-203ENST00000434601 GTF2E1P29083 439 aaPredicted RBP13.94□□□□□ -0.18
LINC00539-203ENST00000434601 ALDH1B1P30837 517 aa13.94□□□□□ -0.18
LINC00539-203ENST00000434601 FOXO4P98177 505 aa13.94□□□□□ -0.18
LINC00539-203ENST00000434601 RTL5Q5HYW3 569 aaPredicted RBP13.94□□□□□ -0.18
LINC00539-203ENST00000434601 CHADLQ6NUI6 762 aa13.94□□□□□ -0.18
LINC00539-203ENST00000434601 RTKN2Q8IZC4 609 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms