RNA–Protein interactions for RNA: ENST00000433297.2

HMGCS1-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HMGCS1, Length 3,466 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-202ENST00000433297 ANKRD1Q15327 319 aa13.52□□□□□ -0.25
HMGCS1-202ENST00000433297 KRBA2Q6ZNG9 492 aa13.52□□□□□ -0.25
HMGCS1-202ENST00000433297 CEP57L1Q8IYX8 460 aa13.52□□□□□ -0.25
HMGCS1-202ENST00000433297 PI4KAP1Q8N8J0 262 aa13.52□□□□□ -0.25
HMGCS1-202ENST00000433297 CCDC34Q96HJ3 373 aa13.52□□□□□ -0.25
HMGCS1-202ENST00000433297 PPP1R13BQ96KQ4 1090 aa13.52□□□□□ -0.25
HMGCS1-202ENST00000433297 FAM53CQ9NYF3 392 aa13.52□□□□□ -0.25
HMGCS1-202ENST00000433297 CAVIN2O95810 425 aa13.51□□□□□ -0.25
HMGCS1-202ENST00000433297 AMPHP49418 695 aa13.51□□□□□ -0.25
HMGCS1-202ENST00000433297 SLFNL1Q499Z3 407 aa13.51□□□□□ -0.25
HMGCS1-202ENST00000433297 HSP90AB4PQ58FF6 505 aa13.51□□□□□ -0.25
HMGCS1-202ENST00000433297 ISM2Q6H9L7 571 aa13.51□□□□□ -0.25
HMGCS1-202ENST00000433297 SARM1Q6SZW1 724 aa13.51□□□□□ -0.25
HMGCS1-202ENST00000433297 ANO10Q9NW15 660 aa13.51□□□□□ -0.25
HMGCS1-202ENST00000433297 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.51□□□□□ -0.257e-27■□□□□ 8.4
HMGCS1-202ENST00000433297 UHRF1BP1LA0JNW5 1464 aa13.51□□□□□ -0.25
HMGCS1-202ENST00000433297 SFPQP23246 707 aaKnown RBP eCLIP13.51□□□□□ -0.25
HMGCS1-202ENST00000433297 RPS6KB1P23443 525 aa13.51□□□□□ -0.25
HMGCS1-202ENST00000433297 ST5P78524 1137 aa13.51□□□□□ -0.25
HMGCS1-202ENST00000433297 TOB2Q14106 344 aaPredicted RBP13.51□□□□□ -0.25
HMGCS1-202ENST00000433297 POLA2Q14181 598 aa13.51□□□□□ -0.25
HMGCS1-202ENST00000433297 DHX40Q8IX18 779 aaKnown RBP13.51□□□□□ -0.25
HMGCS1-202ENST00000433297 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.51□□□□□ -0.25
HMGCS1-202ENST00000433297 IFNKQ9P0W0 207 aa13.51□□□□□ -0.25
HMGCS1-202ENST00000433297 CPS1P31327 1500 aa13.51□□□□□ -0.25
HMGCS1-202ENST00000433297 KIF2AO00139 706 aaPredicted RBP13.51□□□□□ -0.25
HMGCS1-202ENST00000433297 H2AFXP16104 143 aaPredicted RBP13.51□□□□□ -0.25
HMGCS1-202ENST00000433297 EVI5LQ96CN4 794 aa13.51□□□□□ -0.25
HMGCS1-202ENST00000433297 GOLPH3LQ9H4A5 285 aa13.51□□□□□ -0.25
HMGCS1-202ENST00000433297 GYS2P54840 703 aa13.5□□□□□ -0.25
HMGCS1-202ENST00000433297 MAP4K1Q92918 833 aa13.5□□□□□ -0.25
HMGCS1-202ENST00000433297 C9orf78Q9NZ63 289 aaPredicted RBP13.5□□□□□ -0.25
HMGCS1-202ENST00000433297 ABCA9Q8IUA7 1624 aa13.5□□□□□ -0.25
HMGCS1-202ENST00000433297 A0A0D9SFI3 127 aa13.5□□□□□ -0.25
HMGCS1-202ENST00000433297 NRDCO43847 1150 aa13.5□□□□□ -0.25
HMGCS1-202ENST00000433297 C10orf67Q8IYJ2 551 aa13.5□□□□□ -0.25
HMGCS1-202ENST00000433297 FSIP1Q8NA03 581 aa13.5□□□□□ -0.25
HMGCS1-202ENST00000433297 XPO4Q9C0E2 1151 aaKnown RBP13.5□□□□□ -0.25
HMGCS1-202ENST00000433297 FEZ2Q9UHY8 353 aaPredicted RBP13.5□□□□□ -0.25
HMGCS1-202ENST00000433297 TTC41PQ6P2S7 1318 aa13.5□□□□□ -0.25
HMGCS1-202ENST00000433297 TULP2O00295 520 aa13.49□□□□□ -0.25
HMGCS1-202ENST00000433297 GSDMDP57764 484 aa13.49□□□□□ -0.25
HMGCS1-202ENST00000433297 TPM4P67936 248 aa13.49□□□□□ -0.25
HMGCS1-202ENST00000433297 PTPN21Q16825 1174 aa13.49□□□□□ -0.25
HMGCS1-202ENST00000433297 CARD6Q9BX69 1037 aa13.49□□□□□ -0.25
HMGCS1-202ENST00000433297 NAT10Q9H0A0 1025 aaKnown RBP13.49□□□□□ -0.25
HMGCS1-202ENST00000433297 PDIA4P13667 645 aaKnown RBP13.49□□□□□ -0.25
HMGCS1-202ENST00000433297 RESTQ13127 1097 aa13.49□□□□□ -0.25
HMGCS1-202ENST00000433297 GNAT3A8MTJ3 354 aa13.48□□□□□ -0.25
HMGCS1-202ENST00000433297 SMARCE1Q969G3 411 aa13.48□□□□□ -0.25
HMGCS1-202ENST00000433297 EDC3Q96F86 508 aaKnown RBP13.48□□□□□ -0.25
HMGCS1-202ENST00000433297 EYA1Q99502 592 aa13.48□□□□□ -0.25
HMGCS1-202ENST00000433297 CTAGE5O15320 804 aa13.48□□□□□ -0.25
HMGCS1-202ENST00000433297 Q6ZUG5 572 aa13.48□□□□□ -0.25
HMGCS1-202ENST00000433297 CCDC9Q9Y3X0 531 aaKnown RBP13.48□□□□□ -0.25
HMGCS1-202ENST00000433297 TTC21BQ7Z4L5 1316 aa13.48□□□□□ -0.25
HMGCS1-202ENST00000433297 A0A1B0GVL5 298 aa13.48□□□□□ -0.25
HMGCS1-202ENST00000433297 CCT2P78371 535 aaKnown RBP13.48□□□□□ -0.25
HMGCS1-202ENST00000433297 ARMCX5Q6P1M9 558 aa13.48□□□□□ -0.25
HMGCS1-202ENST00000433297 NBPF11Q86T75 865 aa13.48□□□□□ -0.25
HMGCS1-202ENST00000433297 USP28Q96RU2 1077 aa13.48□□□□□ -0.25
HMGCS1-202ENST00000433297 PIK3C2BO00750 1634 aa13.47□□□□□ -0.25
HMGCS1-202ENST00000433297 ZNF589Q86UQ0 364 aaPredicted RBP13.47□□□□□ -0.25
HMGCS1-202ENST00000433297 DNAAF4Q8WXU2 420 aa13.47□□□□□ -0.25
HMGCS1-202ENST00000433297 CHPF2Q9P2E5 772 aa13.47□□□□□ -0.25
HMGCS1-202ENST00000433297 RSPH14Q9UHP6 348 aa13.47□□□□□ -0.25
HMGCS1-202ENST00000433297 SIGLEC1Q9BZZ2 1709 aa13.47□□□□□ -0.25
HMGCS1-202ENST00000433297 OAS2P29728 719 aaKnown RBP13.47□□□□□ -0.25
HMGCS1-202ENST00000433297 SF3A1Q15459 793 aaKnown RBP13.47□□□□□ -0.25
HMGCS1-202ENST00000433297 CCDC191Q8NCU4 936 aa13.47□□□□□ -0.25
HMGCS1-202ENST00000433297 TRIM66O15016 1216 aa13.47□□□□□ -0.25
HMGCS1-202ENST00000433297 LMOD1P29536 600 aaPredicted RBP13.47□□□□□ -0.25
HMGCS1-202ENST00000433297 GOLGA8FQ08AF8 430 aa13.47□□□□□ -0.25
HMGCS1-202ENST00000433297 GOLGA8DPQ0D2H9 430 aa13.47□□□□□ -0.25
HMGCS1-202ENST00000433297 IL17REQ8NFR9 667 aa13.47□□□□□ -0.25
HMGCS1-202ENST00000433297 L2HGDHQ9H9P8 463 aa13.47□□□□□ -0.25
HMGCS1-202ENST00000433297 NDUFB9Q9Y6M9 179 aa13.47□□□□□ -0.25
HMGCS1-202ENST00000433297 MAP3K5Q99683 1374 aa13.46□□□□□ -0.25
HMGCS1-202ENST00000433297 ACEP12821 1306 aa13.46□□□□□ -0.25
HMGCS1-202ENST00000433297 GPS2Q13227 327 aa13.46□□□□□ -0.25
HMGCS1-202ENST00000433297 NUTM2GQ5VZR2 741 aa13.46□□□□□ -0.25
HMGCS1-202ENST00000433297 ZSCAN16Q9H4T2 348 aaPredicted RBP13.46□□□□□ -0.25
HMGCS1-202ENST00000433297 ORC3Q9UBD5 711 aaPredicted RBP13.46□□□□□ -0.25
HMGCS1-202ENST00000433297 FRMPD1Q5SYB0 1578 aa13.46□□□□□ -0.25
HMGCS1-202ENST00000433297 DPCR1Q3MIW9 517 aa13.46□□□□□ -0.26
HMGCS1-202ENST00000433297 NEK1Q96PY6 1258 aa13.46□□□□□ -0.26
HMGCS1-202ENST00000433297 TLR7Q9NYK1 1049 aaKnown RBP13.46□□□□□ -0.26
HMGCS1-202ENST00000433297 LMAN1P49257 510 aa13.45□□□□□ -0.26
HMGCS1-202ENST00000433297 TXLNBQ8N3L3 684 aa13.45□□□□□ -0.26
HMGCS1-202ENST00000433297 SEC62Q99442 399 aaKnown RBP13.45□□□□□ -0.26
HMGCS1-202ENST00000433297 UTP14AQ9BVJ6 771 aaKnown RBP13.45□□□□□ -0.26
HMGCS1-202ENST00000433297 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.45□□□□□ -0.26
HMGCS1-202ENST00000433297 ALKQ9UM73 1620 aa13.45□□□□□ -0.26
HMGCS1-202ENST00000433297 EVCP57679 992 aa13.45□□□□□ -0.26
HMGCS1-202ENST00000433297 ETF1P62495 437 aaKnown RBP13.45□□□□□ -0.26
HMGCS1-202ENST00000433297 G3BP1Q13283 466 aaKnown RBP eCLIP13.45□□□□□ -0.262e-8■■□□□ 13
HMGCS1-202ENST00000433297 ZSCAN26Q16670 478 aa13.45□□□□□ -0.26
HMGCS1-202ENST00000433297 KCNB2Q92953 911 aa13.45□□□□□ -0.26
HMGCS1-202ENST00000433297 TSPYL1Q9H0U9 437 aa13.45□□□□□ -0.26
HMGCS1-202ENST00000433297 FAM160A1Q05DH4 1040 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 91.3 ms